Wall clock time and date at job start Tue Mar 31 2020 13:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00539 * 2 1 4 4 H 1.48498 * 109.47545 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47117 * 300.00529 * 3 2 1 6 6 H 1.48504 * 109.46892 * 60.00134 * 3 2 1 7 7 C 1.37877 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47132 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21344 * 119.99818 * 359.97438 * 12 11 10 14 14 C 1.49450 * 119.99981 * 179.97438 * 12 11 10 15 15 O 1.21359 * 119.99783 * 359.97438 * 14 12 11 16 16 N 1.34770 * 119.99799 * 179.97438 * 14 12 11 17 17 C 1.46507 * 119.99912 * 180.02562 * 16 14 12 18 18 C 1.52992 * 109.47485 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 18 17 21 21 C 1.38224 * 120.01147 * 99.99850 * 20 19 18 22 22 C 1.38218 * 120.02596 * 179.97438 * 21 20 19 23 23 C 1.38270 * 120.05109 * 0.02732 * 22 21 20 24 24 C 1.38170 * 120.02397 * 359.97438 * 23 22 21 25 25 C 1.38432 * 120.01370 * 279.72550 * 20 19 18 26 26 F 1.35102 * 120.02704 * 359.97438 * 25 20 19 27 27 H 0.97002 * 120.00222 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 29 29 H 1.09001 * 109.47438 * 300.00155 * 9 7 2 30 30 H 1.08992 * 109.47290 * 59.99847 * 10 9 7 31 31 H 1.09001 * 109.46630 * 300.00091 * 10 9 7 32 32 H 0.97006 * 119.99859 * 359.97438 * 11 10 9 33 33 H 0.96992 * 120.00518 * 359.97438 * 16 14 12 34 34 H 1.09002 * 109.47280 * 59.99618 * 17 16 14 35 35 H 1.09001 * 109.46702 * 299.99811 * 17 16 14 36 36 H 1.09002 * 109.47103 * 59.99596 * 18 17 16 37 37 H 1.08998 * 109.46862 * 300.00408 * 18 17 16 38 38 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 39 39 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 40 40 H 1.08002 * 119.98697 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.97411 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.98601 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.01264 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5125 -4.9309 -0.0012 12 6 2.1863 -6.0981 -0.0018 13 8 3.3998 -6.0982 -0.0023 14 6 1.4390 -7.3924 -0.0018 15 8 0.2254 -7.3923 -0.0008 16 7 2.1128 -8.5595 -0.0030 17 6 1.3803 -9.8283 -0.0036 18 6 2.3744 -10.9912 -0.0055 19 6 1.6093 -12.3162 -0.0055 20 6 2.5886 -13.4617 -0.0081 21 6 2.8817 -14.1233 1.1696 22 6 3.7794 -15.1743 1.1675 23 6 4.3856 -15.5648 -0.0122 24 6 4.0942 -14.9049 -1.1907 25 6 3.1906 -13.8554 -1.1908 26 9 2.9003 -13.2134 -2.3436 27 1 -0.4850 0.8400 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6245 -2.5571 0.8897 30 1 2.8717 -3.6045 0.8894 31 1 2.8717 -3.6044 -0.8905 32 1 0.5424 -4.9308 -0.0011 33 1 3.0828 -8.5596 -0.0042 34 1 0.7532 -9.8854 -0.8933 35 1 0.7540 -9.8866 0.8867 36 1 3.0018 -10.9344 0.8840 37 1 3.0003 -10.9326 -0.8959 38 1 0.9816 -12.3733 -0.8948 39 1 0.9837 -12.3745 0.8852 40 1 2.4091 -13.8189 2.0918 41 1 4.0075 -15.6909 2.0881 42 1 5.0872 -16.3858 -0.0126 43 1 4.5682 -15.2097 -2.1120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323097687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:39 Heat of formation + Delta-G solvation = -115.227603 kcal Electronic energy + Delta-G solvation = -24910.135266 eV Core-core repulsion = 20868.876634 eV Total energy + Delta-G solvation = -4041.258631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.29052 -40.40471 -39.61041 -38.33181 -36.34811 -35.11549 -33.91084 -32.83606 -31.14907 -30.56736 -29.79861 -26.95160 -25.34202 -23.62634 -23.25565 -22.31857 -21.58801 -21.00557 -20.08365 -18.24068 -18.02034 -16.99828 -16.85214 -16.43681 -16.16614 -16.08933 -15.95681 -15.29668 -15.22218 -14.82209 -14.63273 -14.43562 -14.15577 -13.80724 -13.69346 -13.43207 -13.27282 -13.05571 -12.65346 -12.44029 -12.32602 -12.19581 -11.92737 -11.49080 -11.34225 -11.23630 -11.22316 -11.07346 -10.64794 -10.40271 -9.79385 -9.49094 -9.42228 -9.35252 -9.19500 -9.10039 -8.69026 -8.41737 -6.09980 -4.13559 0.65317 0.70326 1.62581 2.53822 3.08532 3.28221 3.35855 3.40478 3.44295 3.79855 3.88211 4.06011 4.22444 4.40598 4.42192 4.56166 4.68421 4.73141 4.75810 4.83625 4.85809 5.12394 5.18586 5.27029 5.34322 5.44437 5.55233 5.57901 5.69423 5.76002 5.86933 5.91864 6.11623 6.18829 6.24486 6.40106 6.60358 6.70040 7.05843 7.47418 7.58300 7.67567 7.87578 7.93686 8.21780 8.34902 8.92308 9.51408 11.01543 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.036784 B = 0.001573 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.021104 B =17795.856526 C =17953.056757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.118 3.882 11 N -0.686 5.686 12 C 0.497 3.503 13 O -0.534 6.534 14 C 0.508 3.492 15 O -0.520 6.520 16 N -0.706 5.706 17 C 0.118 3.882 18 C -0.128 4.128 19 C -0.077 4.077 20 C -0.115 4.115 21 C -0.088 4.088 22 C -0.129 4.129 23 C -0.096 4.096 24 C -0.153 4.153 25 C 0.100 3.900 26 F -0.136 7.136 27 H 0.262 0.738 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.411 0.589 33 H 0.413 0.587 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.713 -33.804 1.248 34.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.337 5.337 12 C 0.277 3.723 13 O -0.412 6.412 14 C 0.288 3.712 15 O -0.395 6.395 16 N -0.361 5.361 17 C -0.005 4.005 18 C -0.166 4.166 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.107 4.107 22 C -0.147 4.147 23 C -0.114 4.114 24 C -0.172 4.172 25 C 0.081 3.919 26 F -0.114 7.114 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.246 0.754 33 H 0.249 0.751 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.524 -33.620 1.199 34.092 hybrid contribution 0.387 0.961 -0.252 1.066 sum 5.911 -32.659 0.947 33.203 Atomic orbital electron populations 1.69968 1.06096 1.26836 1.50145 1.25003 0.94898 0.99452 0.94939 0.86441 0.80107 0.83283 0.77626 1.19588 1.20928 1.20926 1.21055 0.93267 0.90234 1.51605 0.92102 1.19371 0.94210 0.90892 0.98274 1.21936 0.96273 0.80761 1.01340 1.46236 1.11794 1.05793 1.69859 1.19975 0.87709 0.85272 0.79391 1.90727 1.13245 1.87550 1.49698 1.20456 0.87732 0.85581 0.77386 1.90760 1.13439 1.87690 1.47661 1.45735 1.11479 1.04957 1.73891 1.21437 0.94642 0.81359 1.03068 1.21780 0.98417 0.92676 1.03706 1.20448 0.96107 0.90716 1.04212 1.19928 1.00090 0.99184 0.92359 1.21018 0.97381 0.95111 0.97140 1.21244 0.97326 0.97589 0.98539 1.21040 0.99221 0.99332 0.91802 1.21192 0.99265 0.96561 1.00186 1.17609 0.98455 0.94080 0.81733 1.91514 1.92154 1.80503 1.47268 0.92834 0.95628 0.95639 0.91854 0.91862 0.75374 0.75110 0.90829 0.90806 0.90610 0.90725 0.90032 0.89790 0.84878 0.85266 0.85063 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.50 5.61 -4.04 -0.02 2.47 16 11 N -0.69 -12.65 5.55 -60.73 -0.34 -12.99 16 12 C 0.50 8.66 7.89 -11.58 -0.09 8.56 16 13 O -0.53 -10.19 16.48 5.50 0.09 -10.10 16 14 C 0.51 7.67 7.89 -11.59 -0.09 7.58 16 15 O -0.52 -8.88 16.48 5.49 0.09 -8.78 16 16 N -0.71 -8.11 5.55 -60.73 -0.34 -8.44 16 17 C 0.12 1.05 5.67 -4.04 -0.02 1.03 16 18 C -0.13 -0.87 5.31 -26.74 -0.14 -1.01 16 19 C -0.08 -0.47 5.07 -27.88 -0.14 -0.61 16 20 C -0.11 -0.78 5.14 -104.55 -0.54 -1.31 16 21 C -0.09 -0.48 9.67 -39.59 -0.38 -0.87 16 22 C -0.13 -0.63 10.04 -39.58 -0.40 -1.02 16 23 C -0.10 -0.48 10.04 -39.59 -0.40 -0.88 16 24 C -0.15 -0.97 10.03 -39.52 -0.40 -1.37 16 25 C 0.10 0.79 7.24 -39.42 -0.29 0.50 16 26 F -0.14 -1.25 16.66 2.25 0.04 -1.22 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.41 7.22 7.95 -40.82 -0.32 6.90 16 33 H 0.41 4.29 7.94 -40.82 -0.32 3.96 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.52 7.94 -51.93 -0.41 0.11 16 39 H 0.08 0.39 8.01 -51.93 -0.42 -0.02 16 40 H 0.13 0.49 8.04 -52.49 -0.42 0.07 16 41 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.13 0.37 8.06 -52.49 -0.42 -0.06 16 43 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -32.52 379.36 -8.58 -41.09 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.09 Total: 3.84 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -3.46 Total: 0.00 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.06 Total: -46.84 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.18 Total: -18.89 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.52 -8.58 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323097687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.134 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds