Wall clock time and date at job start Tue Mar 31 2020 13:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00539 * 2 1 4 4 H 1.48498 * 109.47545 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47117 * 300.00529 * 3 2 1 6 6 H 1.48504 * 109.46892 * 60.00134 * 3 2 1 7 7 C 1.37877 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47132 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21344 * 119.99818 * 359.97438 * 12 11 10 14 14 C 1.49450 * 119.99981 * 179.97438 * 12 11 10 15 15 O 1.21359 * 119.99783 * 359.97438 * 14 12 11 16 16 N 1.34770 * 119.99799 * 179.97438 * 14 12 11 17 17 C 1.46507 * 119.99912 * 180.02562 * 16 14 12 18 18 C 1.52992 * 109.47485 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 18 17 21 21 C 1.38224 * 120.01147 * 99.99850 * 20 19 18 22 22 C 1.38218 * 120.02596 * 179.97438 * 21 20 19 23 23 C 1.38270 * 120.05109 * 0.02732 * 22 21 20 24 24 C 1.38170 * 120.02397 * 359.97438 * 23 22 21 25 25 C 1.38432 * 120.01370 * 279.72550 * 20 19 18 26 26 F 1.35102 * 120.02704 * 359.97438 * 25 20 19 27 27 H 0.97002 * 120.00222 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 29 29 H 1.09001 * 109.47438 * 300.00155 * 9 7 2 30 30 H 1.08992 * 109.47290 * 59.99847 * 10 9 7 31 31 H 1.09001 * 109.46630 * 300.00091 * 10 9 7 32 32 H 0.97006 * 119.99859 * 359.97438 * 11 10 9 33 33 H 0.96992 * 120.00518 * 359.97438 * 16 14 12 34 34 H 1.09002 * 109.47280 * 59.99618 * 17 16 14 35 35 H 1.09001 * 109.46702 * 299.99811 * 17 16 14 36 36 H 1.09002 * 109.47103 * 59.99596 * 18 17 16 37 37 H 1.08998 * 109.46862 * 300.00408 * 18 17 16 38 38 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 39 39 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 40 40 H 1.08002 * 119.98697 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.97411 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.98601 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.01264 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5125 -4.9309 -0.0012 12 6 2.1863 -6.0981 -0.0018 13 8 3.3998 -6.0982 -0.0023 14 6 1.4390 -7.3924 -0.0018 15 8 0.2254 -7.3923 -0.0008 16 7 2.1128 -8.5595 -0.0030 17 6 1.3803 -9.8283 -0.0036 18 6 2.3744 -10.9912 -0.0055 19 6 1.6093 -12.3162 -0.0055 20 6 2.5886 -13.4617 -0.0081 21 6 2.8817 -14.1233 1.1696 22 6 3.7794 -15.1743 1.1675 23 6 4.3856 -15.5648 -0.0122 24 6 4.0942 -14.9049 -1.1907 25 6 3.1906 -13.8554 -1.1908 26 9 2.9003 -13.2134 -2.3436 27 1 -0.4850 0.8400 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6245 -2.5571 0.8897 30 1 2.8717 -3.6045 0.8894 31 1 2.8717 -3.6044 -0.8905 32 1 0.5424 -4.9308 -0.0011 33 1 3.0828 -8.5596 -0.0042 34 1 0.7532 -9.8854 -0.8933 35 1 0.7540 -9.8866 0.8867 36 1 3.0018 -10.9344 0.8840 37 1 3.0003 -10.9326 -0.8959 38 1 0.9816 -12.3733 -0.8948 39 1 0.9837 -12.3745 0.8852 40 1 2.4091 -13.8189 2.0918 41 1 4.0075 -15.6909 2.0881 42 1 5.0872 -16.3858 -0.0126 43 1 4.5682 -15.2097 -2.1120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323097687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:37 Heat of formation + Delta-G solvation = -136.192877 kcal Electronic energy + Delta-G solvation = -24911.044388 eV Core-core repulsion = 20868.876634 eV Total energy + Delta-G solvation = -4042.167754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -49.88146 -41.70353 -40.06156 -39.65010 -37.28263 -36.65648 -34.96951 -34.55174 -31.72053 -31.60456 -31.12549 -27.95553 -26.86139 -24.90450 -23.69138 -23.21467 -22.75330 -22.12221 -21.33021 -19.55473 -18.59139 -18.49917 -17.84815 -17.53497 -17.19482 -16.93663 -16.59494 -16.51449 -16.36847 -16.28384 -15.97817 -15.43597 -15.09681 -14.87232 -14.54997 -14.31886 -14.26458 -14.17602 -13.83721 -13.41228 -13.25752 -12.96575 -12.95633 -12.88708 -12.64554 -12.51204 -12.41445 -12.29994 -11.83378 -11.74712 -11.69085 -11.42093 -10.72804 -10.62501 -10.36208 -10.20456 -9.88198 -9.57645 -8.23737 -6.34960 0.21326 0.28947 0.30647 1.31402 1.42481 1.43846 1.56745 2.10721 2.39767 2.62515 2.72671 3.11337 3.34662 3.42522 3.53870 3.79771 3.98602 4.06925 4.19666 4.22519 4.37337 4.38190 4.43915 4.44549 4.60599 4.61610 4.77433 4.80657 4.99281 5.04559 5.06782 5.08154 5.14245 5.24416 5.29771 5.42119 5.46049 5.51902 5.54385 5.75195 5.91586 5.99667 6.12610 6.34558 6.69353 6.79437 6.91536 7.34710 8.88487 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.036784 B = 0.001573 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.021104 B =17795.856526 C =17953.056757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.017 3.983 10 C 0.137 3.863 11 N -0.689 5.689 12 C 0.500 3.500 13 O -0.550 6.550 14 C 0.513 3.487 15 O -0.542 6.542 16 N -0.688 5.688 17 C 0.117 3.883 18 C -0.117 4.117 19 C -0.075 4.075 20 C -0.124 4.124 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.098 4.098 24 C -0.165 4.165 25 C 0.071 3.929 26 F -0.152 7.152 27 H 0.265 0.735 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.415 0.585 33 H 0.420 0.580 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.895 -35.085 2.259 35.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.340 5.340 12 C 0.280 3.720 13 O -0.428 6.428 14 C 0.294 3.706 15 O -0.420 6.420 16 N -0.341 5.341 17 C -0.005 4.005 18 C -0.154 4.154 19 C -0.112 4.112 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.147 4.147 23 C -0.116 4.116 24 C -0.183 4.183 25 C 0.052 3.948 26 F -0.131 7.131 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.251 0.749 33 H 0.257 0.743 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.171 0.829 41 H 0.171 0.829 42 H 0.172 0.828 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.732 -34.952 2.208 35.663 hybrid contribution 0.045 1.228 -0.548 1.345 sum 6.776 -33.724 1.660 34.438 Atomic orbital electron populations 1.70083 1.07697 1.27962 1.50996 1.25918 0.95777 1.03287 0.94402 0.85342 0.79041 0.78550 0.77762 1.18626 1.20412 1.20344 1.21483 0.93772 0.91550 1.51504 0.91696 1.19195 0.94374 0.91949 0.96508 1.21485 0.95099 0.80772 1.01164 1.46078 1.11930 1.05481 1.70483 1.20356 0.87561 0.85771 0.78286 1.90715 1.14008 1.87917 1.50203 1.19949 0.87215 0.85498 0.77980 1.90761 1.14053 1.87786 1.49352 1.45758 1.11948 1.04748 1.71679 1.21636 0.95080 0.80542 1.03285 1.21682 0.97855 0.92119 1.03780 1.20431 0.96032 0.90047 1.04713 1.20046 1.00318 0.99633 0.92530 1.21318 0.97424 0.95038 0.97323 1.21611 0.96477 0.97174 0.99418 1.21375 0.99306 0.99567 0.91338 1.21417 0.99185 0.96461 1.01271 1.17966 0.99945 0.95201 0.81737 1.91465 1.92467 1.80972 1.48189 0.92579 0.97396 0.97323 0.91938 0.92063 0.74907 0.74298 0.91155 0.90012 0.89582 0.91583 0.90791 0.88069 0.82945 0.82867 0.82779 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.94 13.29 21.45 0.28 -54.66 16 2 C 0.00 0.27 5.46 84.66 0.46 0.74 16 3 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 0.88 5.09 29.85 0.15 1.03 16 10 C 0.14 5.82 5.61 86.38 0.48 6.30 16 11 N -0.69 -25.44 5.55 -464.41 -2.58 -28.02 16 12 C 0.50 17.14 7.89 87.27 0.69 17.83 16 13 O -0.55 -20.54 16.48 -3.23 -0.05 -20.59 16 14 C 0.51 15.10 7.89 87.27 0.69 15.79 16 15 O -0.54 -18.17 16.48 -3.27 -0.05 -18.22 16 16 N -0.69 -14.90 5.55 -464.40 -2.58 -17.48 16 17 C 0.12 1.92 5.67 86.38 0.49 2.41 16 18 C -0.12 -1.42 5.31 30.59 0.16 -1.26 16 19 C -0.07 -0.81 5.07 29.85 0.15 -0.66 16 20 C -0.12 -1.55 5.14 -19.82 -0.10 -1.65 16 21 C -0.09 -0.82 9.67 22.26 0.22 -0.60 16 22 C -0.13 -0.93 10.04 22.27 0.22 -0.71 16 23 C -0.10 -0.80 10.04 22.26 0.22 -0.58 16 24 C -0.16 -1.99 10.03 22.31 0.22 -1.76 16 25 C 0.07 1.09 7.24 22.37 0.16 1.25 16 26 F -0.15 -2.92 16.66 44.97 0.75 -2.17 16 27 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.41 14.76 7.95 -92.70 -0.74 14.02 16 33 H 0.42 8.10 7.94 -92.71 -0.74 7.36 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.92 7.94 -2.39 -0.02 0.90 16 39 H 0.10 0.73 8.01 -2.39 -0.02 0.71 16 40 H 0.15 0.67 8.04 -2.91 -0.02 0.64 16 41 H 0.15 0.33 8.06 -2.91 -0.02 0.31 16 42 H 0.15 0.46 8.06 -2.91 -0.02 0.44 16 43 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -69.35 379.36 1.83 -67.52 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.43 Total: 19.92 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 4.46 Total: 8.16 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -4.87 Total: -100.15 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.11 Total: -38.82 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.75 Total: -2.17 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -69.35 1.83 -67.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323097687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.672 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds