Wall clock time and date at job start Tue Mar 31 2020 13:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99883 * 2 1 4 4 C 1.52998 * 112.84799 * 62.00654 * 3 2 1 5 5 N 1.46501 * 109.47333 * 54.00089 * 4 3 2 6 6 C 1.34773 * 120.00096 * 175.48968 * 5 4 3 7 7 O 1.21369 * 119.99947 * 0.02562 * 6 5 4 8 8 C 1.49304 * 119.99887 * 180.02562 * 6 5 4 9 9 O 1.21405 * 120.00357 * 359.97438 * 8 6 5 10 10 N 1.34787 * 120.00010 * 179.97438 * 8 6 5 11 11 C 1.40287 * 120.00210 * 179.97438 * 10 8 6 12 12 C 1.40728 * 126.10020 * 359.95990 * 11 10 8 13 13 N 1.30876 * 108.37448 * 179.79203 * 12 11 10 14 14 N 1.40061 * 108.43846 * 0.38187 * 13 12 11 15 15 C 1.37286 * 126.05502 * 179.87622 * 14 13 12 16 16 H 1.08002 * 120.00260 * 179.68636 * 15 14 13 17 17 C 1.39011 * 120.00090 * 359.96988 * 15 14 13 18 18 N 1.31274 * 120.00157 * 359.71875 * 17 15 14 19 19 Si 1.86805 * 119.99871 * 179.72206 * 17 15 14 20 20 H 1.48498 * 109.47123 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46893 * 119.99798 * 19 17 15 22 22 H 1.48493 * 109.46832 * 239.99533 * 19 17 15 23 23 C 1.35780 * 126.10227 * 180.02562 * 11 10 8 24 24 C 1.53786 * 113.68817 * 193.27368 * 3 2 1 25 25 C 1.53777 * 87.07943 * 89.12605 * 24 3 2 26 26 C 1.53776 * 113.61350 * 290.80945 * 3 2 1 27 27 H 1.08999 * 109.46902 * 295.24717 * 1 2 3 28 28 H 1.09000 * 109.46997 * 55.24694 * 1 2 3 29 29 H 1.08997 * 109.46831 * 175.24732 * 1 2 3 30 30 H 1.09003 * 109.47231 * 293.99993 * 4 3 2 31 31 H 1.09004 * 109.47007 * 174.00221 * 4 3 2 32 32 H 0.97003 * 119.99891 * 355.49519 * 5 4 3 33 33 H 0.97003 * 119.99890 * 0.02562 * 10 8 6 34 34 H 1.08002 * 125.80841 * 0.02562 * 12 11 10 35 35 H 0.96999 * 120.00288 * 179.97438 * 18 17 15 36 36 H 1.07999 * 126.25014 * 359.97438 * 23 11 10 37 37 H 1.09001 * 113.60896 * 203.67651 * 24 3 2 38 38 H 1.08997 * 113.61218 * 334.57587 * 24 3 2 39 39 H 1.08995 * 113.62036 * 270.87834 * 25 24 3 40 40 H 1.09001 * 113.61180 * 139.97734 * 25 24 3 41 41 H 1.08997 * 113.62123 * 25.34496 * 26 3 2 42 42 H 1.08998 * 113.61607 * 156.25382 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6473 2.1174 1.2450 5 7 1.9934 1.3520 2.4452 6 6 1.8463 1.9074 3.6644 7 8 1.4267 3.0415 3.7679 8 6 2.1996 1.1274 4.8875 9 8 2.6189 -0.0072 4.7840 10 7 2.0530 1.6830 6.1068 11 6 2.3844 0.9501 7.2561 12 6 2.8774 -0.3677 7.2856 13 7 3.0720 -0.7075 8.5344 14 7 2.7047 0.3708 9.3493 15 6 2.7616 0.4034 10.7206 16 1 2.4572 1.2926 11.2528 17 6 3.2166 -0.7059 11.4240 18 7 3.5867 -1.7867 10.7773 19 14 3.3013 -0.6587 13.2895 20 1 2.8306 0.6641 13.7731 21 1 2.4362 -1.7270 13.8514 22 1 4.7036 -0.8761 13.7269 23 6 2.2856 1.3850 8.5385 24 6 3.5137 1.3125 -0.3233 25 6 3.1147 1.4322 -1.8036 26 6 1.8035 2.0718 -1.3171 27 1 -0.3633 0.4383 0.9295 28 1 -0.3633 0.5858 -0.8443 29 1 -0.3633 -1.0241 -0.0851 30 1 0.5775 2.3265 1.2433 31 1 2.2010 3.0563 1.2406 32 1 2.3285 0.4454 2.3625 33 1 1.7177 2.5895 6.1895 34 1 3.0669 -0.9909 6.4242 35 1 3.9045 -2.5607 11.2680 36 1 1.9385 2.3564 8.8584 37 1 4.0385 2.1877 0.0596 38 1 4.0167 0.3764 -0.0810 39 1 2.9745 0.4706 -2.2973 40 1 3.7477 2.1130 -2.3727 41 1 0.9260 1.7488 -1.8772 42 1 1.8608 3.1546 -1.2059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325193188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:27 Heat of formation + Delta-G solvation = -0.293490 kcal Electronic energy + Delta-G solvation = -26527.790372 eV Core-core repulsion = 22511.435619 eV Total energy + Delta-G solvation = -4016.354753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80962 -40.15104 -39.34020 -37.85496 -35.98111 -35.01447 -34.02831 -33.13472 -30.32414 -28.91241 -27.93535 -27.42329 -25.90956 -25.31034 -23.99867 -22.47757 -21.02058 -20.41937 -19.80104 -19.44999 -18.34699 -17.44938 -16.81088 -16.32954 -16.13390 -15.68458 -15.52400 -15.48789 -15.07935 -14.86029 -14.56102 -14.41267 -14.03475 -13.76649 -13.49520 -13.19981 -12.98558 -12.86754 -12.66533 -12.10283 -11.81894 -11.74271 -11.56741 -11.41725 -11.30370 -11.23088 -11.19373 -10.85823 -10.56436 -10.52769 -10.28975 -9.89071 -9.30507 -9.23058 -9.11128 -8.86918 -8.12376 -6.77369 -6.60209 -4.27327 1.66003 2.54566 2.92647 3.04040 3.09940 3.26050 3.33350 3.72148 3.75276 3.92061 4.14127 4.20288 4.25121 4.37865 4.41123 4.62790 4.87241 4.98361 4.98493 5.02601 5.09386 5.17918 5.27255 5.28164 5.33460 5.46378 5.53290 5.65913 5.75825 5.88073 6.14512 6.20582 6.36655 6.76185 6.82898 6.89542 6.92750 7.16692 7.23897 7.77060 7.86284 8.10794 8.19080 8.49520 8.70155 9.31820 9.60465 10.35663 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.035426 B = 0.002178 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.181136 B =12854.607879 C =13117.348714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.075 3.925 4 C 0.106 3.894 5 N -0.697 5.697 6 C 0.514 3.486 7 O -0.532 6.532 8 C 0.484 3.516 9 O -0.521 6.521 10 N -0.584 5.584 11 C -0.069 4.069 12 C -0.027 4.027 13 N -0.260 5.260 14 N -0.139 5.139 15 C -0.321 4.321 16 H 0.118 0.882 17 C 0.046 3.954 18 N -0.767 5.767 19 Si 0.936 3.064 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.077 4.077 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.158 4.158 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.418 0.582 33 H 0.409 0.591 34 H 0.178 0.822 35 H 0.275 0.725 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 7.222 -20.704 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.274 6.274 3 C 0.034 3.966 4 C -0.018 4.018 5 N -0.351 5.351 6 C 0.296 3.704 7 O -0.408 6.408 8 C 0.264 3.736 9 O -0.398 6.398 10 N -0.227 5.227 11 C -0.175 4.175 12 C -0.202 4.202 13 N -0.091 5.091 14 N 0.094 4.906 15 C -0.454 4.454 16 H 0.136 0.864 17 C -0.172 4.172 18 N -0.394 5.394 19 Si 0.760 3.240 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.229 4.229 24 C -0.162 4.162 25 C -0.171 4.171 26 C -0.196 4.196 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.256 0.744 33 H 0.244 0.756 34 H 0.195 0.805 35 H 0.086 0.914 36 H 0.166 0.834 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.234 5.898 -19.870 20.977 hybrid contribution -0.609 1.030 0.245 1.221 sum -3.843 6.928 -19.625 21.164 Atomic orbital electron populations 1.22807 0.80709 1.03085 1.00438 1.87955 1.20042 1.24822 1.94629 1.22882 0.96235 0.84547 0.92893 1.21894 1.01454 0.95274 0.83220 1.45556 1.65758 1.19443 1.04359 1.20326 0.78572 0.86597 0.84941 1.90727 1.44761 1.18297 1.87014 1.19625 0.82640 0.87236 0.84077 1.90665 1.45361 1.17858 1.85901 1.42144 1.60157 1.16929 1.03427 1.17252 1.20599 0.95267 0.84365 1.24157 1.05317 0.94260 0.96509 1.78261 1.23716 1.08366 0.98763 1.44571 1.33919 1.06840 1.05231 1.19967 1.45866 1.02638 0.76895 0.86397 1.25673 0.95334 0.94696 1.01475 1.70213 1.30396 1.02294 1.36460 0.85740 0.78614 0.79237 0.80428 1.18624 1.19870 1.19865 1.21302 1.16006 0.96460 0.89131 1.23035 0.93077 1.03797 0.96246 1.22761 0.96614 1.01405 0.96329 1.23471 0.99376 1.00555 0.96201 0.93566 0.93719 0.89202 0.91074 0.89686 0.74424 0.75627 0.80539 0.91402 0.83357 0.88435 0.89892 0.89607 0.90996 0.90558 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.52 101.05 1.06 1.26 16 2 O -0.36 -3.45 10.15 -35.23 -0.36 -3.80 16 3 C 0.07 0.62 0.75 -89.81 -0.07 0.55 16 4 C 0.11 1.02 4.59 -4.04 -0.02 1.01 16 5 N -0.70 -8.65 5.47 -60.78 -0.33 -8.99 16 6 C 0.51 7.92 7.88 -11.66 -0.09 7.83 16 7 O -0.53 -8.81 16.47 5.48 0.09 -8.72 16 8 C 0.48 8.90 7.85 -11.65 -0.09 8.81 16 9 O -0.52 -10.74 13.62 5.45 0.07 -10.67 16 10 N -0.58 -11.15 5.45 -10.46 -0.06 -11.21 16 11 C -0.07 -1.61 6.90 -83.93 -0.58 -2.19 16 12 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 13 N -0.26 -7.51 10.39 30.81 0.32 -7.19 16 14 N -0.14 -3.79 3.73 -11.40 -0.04 -3.83 16 15 C -0.32 -8.43 10.25 -14.82 -0.15 -8.58 16 16 H 0.12 2.77 7.83 -52.49 -0.41 2.35 16 17 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 18 N -0.77 -21.23 11.81 55.50 0.66 -20.58 16 19 Si 0.94 18.75 29.55 -169.99 -5.02 13.73 16 20 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 23 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 24 C -0.12 -0.94 7.47 -25.92 -0.19 -1.13 16 25 C -0.13 -0.85 8.02 -25.92 -0.21 -1.05 16 26 C -0.16 -0.99 7.20 -25.92 -0.19 -1.18 16 27 H 0.05 0.39 7.14 -51.93 -0.37 0.02 16 28 H 0.04 0.28 6.79 -51.93 -0.35 -0.08 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.69 7.32 -51.93 -0.38 0.30 16 31 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 32 H 0.42 5.27 7.67 -40.82 -0.31 4.95 16 33 H 0.41 6.73 8.29 -40.82 -0.34 6.39 16 34 H 0.18 4.49 5.92 -52.49 -0.31 4.18 16 35 H 0.28 6.93 8.31 -40.82 -0.34 6.60 16 36 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 37 H 0.10 0.67 8.04 -51.93 -0.42 0.25 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.45 6.93 -51.93 -0.36 0.09 16 42 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -32.83 358.25 -5.61 -38.44 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -5.34 Total: 13.92 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.99 Total: 3.49 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.54 Total: -51.80 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.19 Total: -23.19 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.83 -5.61 -38.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325193188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.147 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds