Wall clock time and date at job start Tue Mar 31 2020 13:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86807 * 119.99842 * 2 1 4 4 H 1.48502 * 109.46858 * 240.00346 * 3 2 1 5 5 H 1.48494 * 109.46859 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46949 * 120.00705 * 3 2 1 7 7 C 1.38654 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00332 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99786 * 359.97438 * 7 2 1 10 10 C 1.35745 * 117.00052 * 185.06395 * 9 7 2 11 11 C 1.38900 * 120.06972 * 354.48373 * 10 9 7 12 12 C 1.38079 * 119.93050 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.06903 * 359.75091 * 12 11 10 14 14 C 1.38278 * 120.13721 * 0.50493 * 13 12 11 15 15 C 1.50704 * 119.96385 * 179.76919 * 14 13 12 16 16 N 1.46911 * 109.46900 * 269.72531 * 15 14 13 17 17 C 1.46893 * 110.99743 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.46963 * 179.97438 * 17 16 15 19 19 C 1.34241 * 125.03928 * 265.00133 * 18 17 16 20 20 C 1.46485 * 106.99705 * 179.97438 * 19 18 17 21 21 C 1.39632 * 134.02921 * 180.02562 * 20 19 18 22 22 C 1.36632 * 119.76419 * 179.97438 * 21 20 19 23 23 C 1.38832 * 120.52477 * 359.97151 * 22 21 20 24 24 C 1.37742 * 120.66985 * 0.04277 * 23 22 21 25 25 C 1.39132 * 119.77903 * 359.97089 * 24 23 22 26 26 N 1.36834 * 125.03346 * 85.00199 * 18 17 16 27 27 H 0.96995 * 125.06291 * 0.02562 * 26 18 17 28 28 C 1.38117 * 120.07143 * 359.49368 * 14 13 12 29 29 H 0.96994 * 120.00046 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.03305 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.96464 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.93076 * 180.27552 * 13 12 11 33 33 H 1.08990 * 109.47258 * 149.72649 * 15 14 13 34 34 H 1.08997 * 109.47132 * 29.72144 * 15 14 13 35 35 H 1.00902 * 111.00048 * 56.04377 * 16 15 14 36 36 H 1.09008 * 109.47212 * 60.00239 * 17 16 15 37 37 H 1.08996 * 109.47644 * 299.99944 * 17 16 15 38 38 H 1.08000 * 126.50245 * 0.02562 * 19 18 17 39 39 H 1.08002 * 120.11796 * 359.69905 * 21 20 19 40 40 H 1.07998 * 119.73545 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.65995 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.10893 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.04068 * 180.23011 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7464 0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0890 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5045 0.1057 11 6 3.4575 -3.4393 0.0927 12 6 4.2027 -4.5967 0.2015 13 6 3.5689 -5.8196 0.3284 14 6 2.1879 -5.8884 0.3363 15 6 1.5014 -7.2234 0.4696 16 7 1.2714 -7.7912 -0.8657 17 6 0.6030 -9.0960 -0.7748 18 6 0.3837 -9.6457 -2.1607 19 6 -0.7447 -9.5082 -2.8748 20 6 -0.5276 -10.1885 -4.1538 21 6 -1.3115 -10.3887 -5.2918 22 6 -0.8040 -11.0872 -6.3507 23 6 0.4856 -11.5992 -6.3047 24 6 1.2760 -11.4136 -5.1920 25 6 0.7795 -10.7057 -4.1020 26 7 1.3054 -10.3589 -2.8777 27 1 2.1966 -10.5862 -2.5695 28 6 1.4369 -4.7343 0.2280 29 1 -0.4850 0.8400 0.0004 30 1 3.9529 -2.4843 -0.0015 31 1 5.2815 -4.5467 0.1911 32 1 4.1540 -6.7231 0.4178 33 1 0.5463 -7.0917 0.9778 34 1 2.1308 -7.8994 1.0483 35 1 2.1355 -7.8630 -1.3818 36 1 -0.3585 -8.9777 -0.2750 37 1 1.2264 -9.7848 -0.2048 38 1 -1.6420 -8.9929 -2.5653 39 1 -2.3171 -9.9967 -5.3331 40 1 -1.4106 -11.2415 -7.2309 41 1 0.8729 -12.1489 -7.1499 42 1 2.2778 -11.8163 -5.1658 43 1 0.3583 -4.7882 0.2379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326710420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:26 Heat of formation + Delta-G solvation = 56.369725 kcal Electronic energy + Delta-G solvation = -24573.105564 eV Core-core repulsion = 20970.057176 eV Total energy + Delta-G solvation = -3603.048388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40535 -39.09940 -37.55691 -36.85630 -35.33832 -32.30454 -32.13196 -31.23590 -29.56453 -29.31986 -28.72270 -26.21098 -25.26926 -23.77804 -22.35983 -21.65421 -21.52043 -20.71942 -20.35501 -17.99631 -17.61878 -16.97181 -16.39568 -15.90929 -15.34135 -15.20711 -14.93675 -14.55622 -14.38675 -14.30058 -14.17168 -13.98782 -13.52022 -13.35136 -13.24137 -13.02264 -12.51987 -12.28008 -12.19886 -11.97344 -11.74556 -11.66522 -11.52210 -11.25771 -11.01361 -10.81765 -10.76141 -10.60717 -10.43693 -9.84726 -9.33663 -8.83727 -8.57278 -8.28021 -8.09133 -7.81937 -7.23977 -6.43157 -4.02424 0.96692 1.50024 2.07821 2.35553 2.56265 2.91769 3.13966 3.14883 3.17844 3.79507 3.97583 4.21199 4.47388 4.61100 4.69080 4.87704 4.92165 4.98621 5.05166 5.13687 5.22995 5.30448 5.32191 5.35492 5.46319 5.55405 5.65407 5.75756 5.82252 5.89465 5.90005 5.93209 6.16751 6.31139 6.35913 6.46810 6.61973 6.63933 6.69089 6.86940 6.91386 7.03154 7.06854 7.20639 7.32481 7.36331 7.36956 7.44842 7.81338 8.01411 9.02149 9.72539 10.74768 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.002168 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.209493 B =12909.140199 C =13698.643828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.152 3.848 11 C -0.231 4.231 12 C -0.076 4.076 13 C -0.209 4.209 14 C -0.050 4.050 15 C 0.107 3.893 16 N -0.675 5.675 17 C 0.119 3.881 18 C 0.084 3.916 19 C -0.178 4.178 20 C -0.108 4.108 21 C -0.069 4.069 22 C -0.151 4.151 23 C -0.102 4.102 24 C -0.132 4.132 25 C 0.099 3.901 26 N -0.593 5.593 27 H 0.411 0.589 28 C -0.165 4.165 29 H 0.270 0.730 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.342 0.658 36 H 0.100 0.900 37 H 0.038 0.962 38 H 0.148 0.852 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 -22.306 -5.670 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.080 6.080 10 C 0.098 3.902 11 C -0.251 4.251 12 C -0.094 4.094 13 C -0.228 4.228 14 C -0.050 4.050 15 C -0.021 4.021 16 N -0.307 5.307 17 C -0.010 4.010 18 C -0.023 4.023 19 C -0.203 4.203 20 C -0.113 4.113 21 C -0.088 4.088 22 C -0.170 4.170 23 C -0.121 4.121 24 C -0.153 4.153 25 C -0.009 4.009 26 N -0.197 5.197 27 H 0.248 0.752 28 C -0.185 4.185 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.160 0.840 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.166 0.834 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.433 -21.742 -5.690 22.520 hybrid contribution 1.829 0.241 0.371 1.882 sum 3.263 -21.501 -5.319 22.389 Atomic orbital electron populations 1.70027 1.05936 1.27764 1.45973 1.25281 0.95836 0.98797 0.96575 0.85792 0.78706 0.79843 0.79148 1.19517 1.20266 1.19541 1.21268 0.91734 0.80863 1.53008 0.89186 1.83983 1.34222 1.11378 1.78438 1.19364 0.90239 0.88120 0.92471 1.21186 0.93891 0.98955 1.11055 1.20682 0.98332 0.92378 0.98046 1.20396 0.93502 0.96845 1.12075 1.19092 0.92950 0.93017 0.99971 1.20828 0.99695 0.92592 0.88989 1.60512 1.29932 1.22832 1.17395 1.20568 1.01193 0.89479 0.89753 1.20165 0.89792 0.97480 0.94901 1.21509 0.99188 1.06521 0.93123 1.19252 0.93877 1.02489 0.95704 1.20314 0.99109 0.97593 0.91735 1.20616 0.96223 1.01217 0.98968 1.20773 0.94208 1.00046 0.97080 1.20008 1.00283 1.02594 0.92393 1.18222 0.94181 1.01060 0.87395 1.41722 1.15420 1.48952 1.13572 0.75226 1.20029 0.99460 0.89655 1.09322 0.91966 0.85647 0.87599 0.88197 0.90056 0.94713 0.83953 0.88174 0.94421 0.83415 0.86035 0.86178 0.85966 0.86488 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 8 H 0.09 2.34 5.20 -52.48 -0.27 2.06 16 9 O -0.18 -5.09 9.76 0.06 0.00 -5.09 16 10 C 0.15 3.69 6.65 -39.10 -0.26 3.43 16 11 C -0.23 -5.06 9.17 -39.39 -0.36 -5.42 16 12 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 13 C -0.21 -3.51 9.70 -39.53 -0.38 -3.89 16 14 C -0.05 -0.86 5.39 -104.65 -0.56 -1.42 16 15 C 0.11 1.41 5.81 -4.97 -0.03 1.38 16 16 N -0.68 -8.41 6.48 -116.34 -0.75 -9.16 16 17 C 0.12 1.17 6.19 -4.98 -0.03 1.14 16 18 C 0.08 0.92 6.59 -81.77 -0.54 0.38 16 19 C -0.18 -2.14 10.95 -37.67 -0.41 -2.55 16 20 C -0.11 -1.33 6.37 -105.14 -0.67 -2.00 16 21 C -0.07 -0.74 10.05 -39.64 -0.40 -1.14 16 22 C -0.15 -1.43 9.97 -39.94 -0.40 -1.83 16 23 C -0.10 -0.92 10.01 -39.54 -0.40 -1.32 16 24 C -0.13 -1.29 10.08 -39.43 -0.40 -1.69 16 25 C 0.10 1.12 7.28 -83.99 -0.61 0.51 16 26 N -0.59 -5.88 6.07 -6.95 -0.04 -5.93 16 27 H 0.41 2.98 8.96 -40.82 -0.37 2.62 16 28 C -0.16 -3.50 9.65 -39.39 -0.38 -3.88 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.10 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.34 4.22 8.71 -39.29 -0.34 3.87 16 36 H 0.10 0.93 8.14 -51.92 -0.42 0.50 16 37 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -32.37 369.47 -11.00 -43.38 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.48 Total: 10.17 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -6.03 Total: -29.84 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.04 Total: -39.78 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.00 Total: -5.09 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.37 -11.00 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326710420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.747 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds