Wall clock time and date at job start Tue Mar 31 2020 13:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86807 * 119.99842 * 2 1 4 4 H 1.48502 * 109.46858 * 240.00346 * 3 2 1 5 5 H 1.48494 * 109.46859 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46949 * 120.00705 * 3 2 1 7 7 C 1.38654 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00332 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99786 * 359.97438 * 7 2 1 10 10 C 1.35745 * 117.00052 * 185.06395 * 9 7 2 11 11 C 1.38900 * 120.06972 * 354.48373 * 10 9 7 12 12 C 1.38079 * 119.93050 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.06903 * 359.75091 * 12 11 10 14 14 C 1.38278 * 120.13721 * 0.50493 * 13 12 11 15 15 C 1.50704 * 119.96385 * 179.76919 * 14 13 12 16 16 N 1.46911 * 109.46900 * 269.72531 * 15 14 13 17 17 C 1.46893 * 110.99743 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.46963 * 179.97438 * 17 16 15 19 19 C 1.34241 * 125.03928 * 265.00133 * 18 17 16 20 20 C 1.46485 * 106.99705 * 179.97438 * 19 18 17 21 21 C 1.39632 * 134.02921 * 180.02562 * 20 19 18 22 22 C 1.36632 * 119.76419 * 179.97438 * 21 20 19 23 23 C 1.38832 * 120.52477 * 359.97151 * 22 21 20 24 24 C 1.37742 * 120.66985 * 0.04277 * 23 22 21 25 25 C 1.39132 * 119.77903 * 359.97089 * 24 23 22 26 26 N 1.36834 * 125.03346 * 85.00199 * 18 17 16 27 27 H 0.96995 * 125.06291 * 0.02562 * 26 18 17 28 28 C 1.38117 * 120.07143 * 359.49368 * 14 13 12 29 29 H 0.96994 * 120.00046 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.03305 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.96464 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.93076 * 180.27552 * 13 12 11 33 33 H 1.08990 * 109.47258 * 149.72649 * 15 14 13 34 34 H 1.08997 * 109.47132 * 29.72144 * 15 14 13 35 35 H 1.00902 * 111.00048 * 56.04377 * 16 15 14 36 36 H 1.09008 * 109.47212 * 60.00239 * 17 16 15 37 37 H 1.08996 * 109.47644 * 299.99944 * 17 16 15 38 38 H 1.08000 * 126.50245 * 0.02562 * 19 18 17 39 39 H 1.08002 * 120.11796 * 359.69905 * 21 20 19 40 40 H 1.07998 * 119.73545 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.65995 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.10893 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.04068 * 180.23011 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7464 0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0890 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5045 0.1057 11 6 3.4575 -3.4393 0.0927 12 6 4.2027 -4.5967 0.2015 13 6 3.5689 -5.8196 0.3284 14 6 2.1879 -5.8884 0.3363 15 6 1.5014 -7.2234 0.4696 16 7 1.2714 -7.7912 -0.8657 17 6 0.6030 -9.0960 -0.7748 18 6 0.3837 -9.6457 -2.1607 19 6 -0.7447 -9.5082 -2.8748 20 6 -0.5276 -10.1885 -4.1538 21 6 -1.3115 -10.3887 -5.2918 22 6 -0.8040 -11.0872 -6.3507 23 6 0.4856 -11.5992 -6.3047 24 6 1.2760 -11.4136 -5.1920 25 6 0.7795 -10.7057 -4.1020 26 7 1.3054 -10.3589 -2.8777 27 1 2.1966 -10.5862 -2.5695 28 6 1.4369 -4.7343 0.2280 29 1 -0.4850 0.8400 0.0004 30 1 3.9529 -2.4843 -0.0015 31 1 5.2815 -4.5467 0.1911 32 1 4.1540 -6.7231 0.4178 33 1 0.5463 -7.0917 0.9778 34 1 2.1308 -7.8994 1.0483 35 1 2.1355 -7.8630 -1.3818 36 1 -0.3585 -8.9777 -0.2750 37 1 1.2264 -9.7848 -0.2048 38 1 -1.6420 -8.9929 -2.5653 39 1 -2.3171 -9.9967 -5.3331 40 1 -1.4106 -11.2415 -7.2309 41 1 0.8729 -12.1489 -7.1499 42 1 2.2778 -11.8163 -5.1658 43 1 0.3583 -4.7882 0.2379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326710420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:26 Heat of formation + Delta-G solvation = 36.275717 kcal Electronic energy + Delta-G solvation = -24573.976906 eV Core-core repulsion = 20970.057176 eV Total energy + Delta-G solvation = -3603.919730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18134 -40.78582 -38.75499 -38.03315 -36.47444 -34.28980 -32.99300 -32.43909 -30.89854 -30.26389 -29.87607 -27.54747 -26.93650 -24.88897 -23.24051 -23.11748 -22.29213 -22.26048 -21.24165 -19.53933 -18.84332 -18.55973 -17.15706 -17.00579 -16.61876 -16.41857 -16.16413 -16.06038 -15.78383 -15.45720 -15.16881 -14.99541 -14.76960 -14.70314 -14.49976 -14.05560 -13.85790 -13.62841 -13.39995 -13.16723 -12.95827 -12.85140 -12.53494 -12.40736 -12.40177 -12.26053 -12.17637 -12.09489 -11.73812 -11.17344 -10.79877 -10.64741 -9.71285 -9.40438 -9.07217 -8.97455 -8.61223 -8.46123 -6.14863 0.18786 0.53814 0.73053 0.75625 1.34330 1.45406 1.51002 1.70011 2.17677 2.18208 2.80643 3.01810 3.13028 3.41060 3.55299 3.69918 3.89416 3.98192 4.13354 4.20909 4.24384 4.32348 4.34549 4.43270 4.48263 4.58435 4.59113 4.62254 4.68620 4.72073 4.77539 5.04671 5.10086 5.10682 5.13225 5.20038 5.31876 5.57699 5.67445 5.72283 5.74457 5.76800 5.83502 5.87446 5.94024 6.03818 6.25548 6.26551 6.36000 6.68704 6.98241 7.80417 8.77116 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.002168 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.209493 B =12909.140199 C =13698.643828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.109 3.891 11 C -0.246 4.246 12 C -0.073 4.073 13 C -0.183 4.183 14 C -0.039 4.039 15 C 0.113 3.887 16 N -0.693 5.693 17 C 0.126 3.874 18 C 0.087 3.913 19 C -0.209 4.209 20 C -0.139 4.139 21 C -0.091 4.091 22 C -0.153 4.153 23 C -0.105 4.105 24 C -0.138 4.138 25 C 0.081 3.919 26 N -0.584 5.584 27 H 0.424 0.576 28 C -0.183 4.183 29 H 0.272 0.728 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.345 0.655 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.142 0.858 41 H 0.151 0.849 42 H 0.140 0.860 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -25.064 -5.780 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.059 3.941 11 C -0.265 4.265 12 C -0.091 4.091 13 C -0.202 4.202 14 C -0.039 4.039 15 C -0.015 4.015 16 N -0.325 5.325 17 C -0.002 4.002 18 C -0.022 4.022 19 C -0.235 4.235 20 C -0.144 4.144 21 C -0.110 4.110 22 C -0.172 4.172 23 C -0.124 4.124 24 C -0.158 4.158 25 C -0.026 4.026 26 N -0.189 5.189 27 H 0.263 0.737 28 C -0.203 4.203 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.163 0.837 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.163 0.837 39 H 0.145 0.855 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.158 0.842 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.632 -24.571 -5.795 25.667 hybrid contribution 0.939 0.695 0.366 1.224 sum 5.571 -23.876 -5.430 25.111 Atomic orbital electron populations 1.70184 1.08050 1.28831 1.48942 1.26610 0.96865 1.02787 0.95921 0.84649 0.77388 0.74252 0.79920 1.18201 1.19611 1.18081 1.21779 0.92473 0.81505 1.53263 0.88179 1.83945 1.35952 1.12594 1.81630 1.19956 0.91701 0.87976 0.94443 1.21309 0.93075 1.00310 1.11816 1.21139 1.00192 0.91473 0.96328 1.21003 0.93383 0.98049 1.07727 1.19575 0.93566 0.93590 0.97204 1.20793 1.00045 0.90762 0.89901 1.60388 1.30334 1.24704 1.17039 1.20572 1.01650 0.88677 0.89347 1.20282 0.89575 0.97079 0.95219 1.21700 1.00051 1.07770 0.93949 1.19582 0.95037 1.03468 0.96304 1.20564 0.99672 0.98585 0.92149 1.20963 0.96840 1.00272 0.99160 1.21187 0.93903 0.99581 0.97751 1.20365 1.01438 1.02083 0.91957 1.18516 0.94150 1.01662 0.88320 1.41676 1.15805 1.48385 1.13023 0.73674 1.20250 0.99398 0.90283 1.10401 0.91863 0.86598 0.83740 0.83293 0.90112 0.91211 0.83691 0.87889 0.91554 0.83730 0.85488 0.84026 0.83168 0.84196 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.76 13.67 21.61 0.30 -57.47 16 2 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 3 Si 1.02 43.54 29.55 68.60 2.03 45.57 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.41 -24.64 9.49 67.92 0.64 -24.00 16 8 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 9 O -0.23 -14.50 9.76 -22.71 -0.22 -14.72 16 10 C 0.11 5.57 6.65 22.58 0.15 5.72 16 11 C -0.25 -10.80 9.17 22.39 0.21 -10.59 16 12 C -0.07 -2.45 10.04 22.25 0.22 -2.23 16 13 C -0.18 -5.31 9.70 22.30 0.22 -5.10 16 14 C -0.04 -1.25 5.39 -19.88 -0.11 -1.36 16 15 C 0.11 2.60 5.81 85.56 0.50 3.10 16 16 N -0.69 -15.38 6.48 -521.98 -3.38 -18.77 16 17 C 0.13 2.14 6.19 85.56 0.53 2.67 16 18 C 0.09 1.78 6.59 40.86 0.27 2.05 16 19 C -0.21 -5.10 10.95 23.51 0.26 -4.85 16 20 C -0.14 -3.44 6.37 -20.20 -0.13 -3.57 16 21 C -0.09 -1.98 10.05 22.23 0.22 -1.76 16 22 C -0.15 -2.71 9.97 22.04 0.22 -2.49 16 23 C -0.11 -1.68 10.01 22.29 0.22 -1.46 16 24 C -0.14 -2.41 10.08 22.37 0.23 -2.18 16 25 C 0.08 1.75 7.28 39.03 0.28 2.04 16 26 N -0.58 -10.51 6.07 -175.91 -1.07 -11.57 16 27 H 0.42 4.98 8.96 -92.71 -0.83 4.15 16 28 C -0.18 -7.98 9.65 22.39 0.22 -7.77 16 29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 31 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 32 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 33 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 34 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 35 H 0.34 7.30 8.71 -89.69 -0.78 6.52 16 36 H 0.10 1.70 8.14 -2.38 -0.02 1.69 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -77.36 369.47 1.71 -75.65 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.56 Total: 34.04 kcal Atomic # 6 Polarization: -57.35 SS G_CDS: 4.62 Total: -52.73 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -4.15 Total: -87.81 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.22 Total: -14.72 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -77.36 1.71 -75.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326710420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.924 kcal (2) G-P(sol) polarization free energy of solvation -77.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds