Wall clock time and date at job start Tue Mar 31 2020 12:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.46851 * 2 1 4 4 C 1.46498 * 120.00398 * 274.63629 * 3 2 1 5 5 C 1.50701 * 109.46881 * 264.38951 * 4 3 2 6 6 H 1.08008 * 120.00139 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00249 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00179 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47275 * 89.99968 * 9 7 5 11 11 H 1.48502 * 109.47115 * 210.00257 * 9 7 5 12 12 H 1.48502 * 109.47052 * 330.00076 * 9 7 5 13 13 C 1.34781 * 119.99581 * 94.63350 * 3 2 1 14 14 O 1.21357 * 119.99837 * 354.58363 * 13 3 2 15 15 C 1.49382 * 119.99661 * 174.58224 * 13 3 2 16 16 O 1.21339 * 120.00249 * 357.90472 * 15 13 3 17 17 N 1.34786 * 119.99831 * 177.90080 * 15 13 3 18 18 C 1.38912 * 120.00139 * 184.02326 * 17 15 13 19 19 C 1.39563 * 120.52925 * 174.64264 * 18 17 15 20 20 C 1.38181 * 118.33487 * 179.69554 * 19 18 17 21 21 N 1.32529 * 119.18461 * 0.28189 * 20 19 18 22 22 C 1.31776 * 120.99788 * 359.97438 * 21 20 19 23 23 C 1.50697 * 119.08264 * 180.02562 * 22 21 20 24 24 O 1.42893 * 109.47500 * 89.99942 * 23 22 21 25 25 C 1.42904 * 114.00223 * 180.02562 * 24 23 22 26 26 N 1.31762 * 121.83621 * 359.97438 * 22 21 20 27 27 H 1.09002 * 109.47111 * 299.99083 * 1 2 3 28 28 H 1.08994 * 109.47531 * 59.99658 * 1 2 3 29 29 H 1.09001 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47111 * 240.00917 * 2 1 3 31 31 H 1.08999 * 109.47476 * 119.99869 * 2 1 3 32 32 H 1.09004 * 109.46734 * 24.38229 * 4 3 2 33 33 H 1.08999 * 109.47139 * 144.38990 * 4 3 2 34 34 H 0.97008 * 119.99699 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99639 * 4.02143 * 17 15 13 36 36 H 1.08001 * 120.83184 * 359.97012 * 19 18 17 37 37 H 1.07991 * 120.40945 * 180.25229 * 20 19 18 38 38 H 1.09002 * 109.47166 * 210.00435 * 23 22 21 39 39 H 1.09005 * 109.46917 * 329.99817 * 23 22 21 40 40 H 1.08998 * 109.46817 * 60.00027 * 25 24 23 41 41 H 1.09000 * 109.46742 * 179.97438 * 25 24 23 42 42 H 1.08997 * 109.46646 * 300.00022 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1658 2.1062 -1.2645 5 6 3.5906 1.9965 -1.7431 6 1 4.3140 1.4426 -1.1631 7 6 3.9707 2.6032 -2.9214 8 7 5.2142 2.5079 -3.3388 9 14 2.7194 3.5606 -3.9249 10 1 2.7136 4.9792 -3.4859 11 1 3.0797 3.4891 -5.3638 12 1 1.3699 2.9745 -3.7229 13 6 2.3318 1.9852 1.1635 14 8 2.1175 1.4215 2.2166 15 6 2.9430 3.3482 1.1565 16 8 3.1923 3.8960 0.1029 17 7 3.2175 3.9696 2.3206 18 6 3.7078 5.2693 2.3155 19 6 3.8906 5.9629 3.5127 20 6 4.3870 7.2511 3.4551 21 7 4.6658 7.7841 2.2742 22 6 4.4769 7.1044 1.1612 23 6 4.8091 7.7523 -0.1582 24 8 6.1701 7.4768 -0.4950 25 6 6.5894 8.0497 -1.7352 26 7 4.0067 5.8735 1.1698 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.4978 1.6752 -2.0103 33 1 1.9130 3.1556 -1.1133 34 1 5.4814 2.9345 -4.1680 35 1 3.0726 3.5092 3.1621 36 1 3.6543 5.5025 4.4607 37 1 4.5454 7.8169 4.3612 38 1 4.1550 7.3537 -0.9336 39 1 4.6650 8.8300 -0.0801 40 1 6.4825 9.1334 -1.6894 41 1 7.6334 7.7953 -1.9183 42 1 5.9723 7.6574 -2.5435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328085043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:25 Heat of formation + Delta-G solvation = -23.112965 kcal Electronic energy + Delta-G solvation = -27948.810210 eV Core-core repulsion = 23931.465930 eV Total energy + Delta-G solvation = -4017.344279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27746 -40.09462 -38.17376 -37.53997 -36.04680 -34.88673 -33.12108 -32.57423 -31.50264 -30.72324 -28.14454 -27.74755 -25.77338 -25.69253 -23.83753 -22.75774 -22.57470 -21.48021 -19.57522 -17.94645 -17.48311 -17.02154 -16.65873 -16.46433 -16.18049 -15.54220 -15.47678 -15.30918 -15.21486 -14.85610 -14.58033 -14.05988 -13.91695 -13.78095 -13.39598 -13.21122 -12.57275 -12.49913 -12.22373 -12.20517 -12.00898 -11.78769 -11.42630 -11.25327 -11.06206 -10.82669 -10.70163 -10.67283 -10.45046 -10.20444 -10.01575 -9.58494 -9.51856 -9.37213 -8.73090 -8.58753 -8.43581 -7.98701 -6.03967 -4.01228 0.83843 1.17622 2.09151 2.51700 3.31244 3.35146 3.38477 3.39706 3.71343 3.79455 4.03778 4.25574 4.43794 4.51481 4.66057 4.86591 5.04615 5.21675 5.26663 5.29820 5.41180 5.44818 5.53149 5.56223 5.57095 5.67492 5.68026 5.83472 6.05748 6.09013 6.15680 6.41796 6.43304 6.55101 6.76737 6.87632 7.08073 7.19599 7.38867 7.56890 7.82105 8.09466 8.32180 8.45551 8.55816 8.95937 9.56057 11.09513 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.005731 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.533402 B = 4884.842035 C = 7150.119771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.553 5.553 4 C 0.200 3.800 5 C -0.516 4.516 6 H 0.072 0.928 7 C 0.083 3.917 8 N -0.894 5.894 9 Si 0.873 3.127 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.512 3.488 14 O -0.556 6.556 15 C 0.475 3.525 16 O -0.374 6.374 17 N -0.642 5.642 18 C 0.414 3.586 19 C -0.264 4.264 20 C 0.167 3.833 21 N -0.534 5.534 22 C 0.352 3.648 23 C 0.134 3.866 24 O -0.379 6.379 25 C 0.035 3.965 26 N -0.491 5.491 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.263 0.737 35 H 0.426 0.574 36 H 0.149 0.851 37 H 0.171 0.829 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.088 0.912 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 7.596 10.399 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.283 5.283 4 C 0.079 3.921 5 C -0.554 4.554 6 H 0.090 0.910 7 C -0.119 4.119 8 N -0.532 5.532 9 Si 0.701 3.299 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.193 1.193 13 C 0.294 3.706 14 O -0.437 6.437 15 C 0.254 3.746 16 O -0.234 6.234 17 N -0.292 5.292 18 C 0.173 3.827 19 C -0.291 4.291 20 C 0.003 3.997 21 N -0.252 5.252 22 C 0.083 3.917 23 C 0.055 3.945 24 O -0.296 6.296 25 C -0.061 4.061 26 N -0.213 5.213 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.265 0.735 36 H 0.167 0.833 37 H 0.188 0.812 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.730 7.920 9.092 12.953 hybrid contribution -0.820 -0.048 0.444 0.934 sum -5.550 7.872 9.537 13.554 Atomic orbital electron populations 1.22118 0.96157 1.01817 1.02179 1.21486 0.93881 0.82276 1.03553 1.47950 1.59276 1.13604 1.07458 1.20300 0.98940 0.92939 0.79887 1.21037 0.93124 1.34005 1.07223 0.91017 1.24699 0.94924 0.95201 0.97119 1.69889 1.16508 1.44285 1.22509 0.86907 0.82011 0.81675 0.79351 1.19754 1.21352 1.19332 1.19684 0.79995 0.86321 0.84556 1.90658 1.55793 1.66498 1.30799 1.20571 0.82038 0.87978 0.83991 1.91056 1.40827 1.63389 1.28147 1.43385 1.62946 1.11387 1.11489 1.18666 0.88609 0.85650 0.89739 1.22286 1.09886 0.98291 0.98615 1.22928 0.89496 0.91297 0.95999 1.68191 1.19582 1.38813 0.98634 1.22566 0.89540 0.85907 0.93720 1.20934 0.85172 0.97891 0.90459 1.87924 1.25853 1.76187 1.39647 1.22762 1.00996 0.96787 0.85566 1.68299 1.14594 1.10514 1.27865 0.92600 0.92406 0.91770 0.89576 0.90168 0.95052 0.92970 0.92689 0.73528 0.83293 0.81161 0.90113 0.90712 0.94103 0.89326 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.87 6.12 -4.04 -0.02 1.84 16 3 N -0.55 -11.36 2.47 -175.59 -0.43 -11.80 16 4 C 0.20 4.66 3.84 -5.19 -0.02 4.64 16 5 C -0.52 -14.35 8.34 -34.44 -0.29 -14.64 16 6 H 0.07 2.23 8.06 -52.48 -0.42 1.80 16 7 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 8 N -0.89 -27.40 13.96 55.43 0.77 -26.62 16 9 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.51 10.37 7.68 -11.62 -0.09 10.28 16 14 O -0.56 -10.96 16.04 5.49 0.09 -10.87 16 15 C 0.47 9.71 7.68 -11.61 -0.09 9.62 16 16 O -0.37 -9.04 10.44 5.51 0.06 -8.98 16 17 N -0.64 -10.49 5.37 -11.70 -0.06 -10.55 16 18 C 0.41 6.83 7.45 -154.50 -1.15 5.68 16 19 C -0.26 -3.15 10.04 -39.11 -0.39 -3.54 16 20 C 0.17 1.95 11.29 -17.27 -0.20 1.76 16 21 N -0.53 -8.09 10.33 -10.80 -0.11 -8.20 16 22 C 0.35 6.19 7.27 -157.24 -1.14 5.05 16 23 C 0.13 2.17 6.37 36.00 0.23 2.40 16 24 O -0.38 -6.70 10.69 -35.23 -0.38 -7.08 16 25 C 0.04 0.48 11.01 101.05 1.11 1.59 16 26 N -0.49 -9.64 7.94 -9.90 -0.08 -9.72 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.44 8.11 -51.93 -0.42 1.01 16 31 H 0.08 1.32 7.36 -51.93 -0.38 0.94 16 32 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 33 H 0.05 1.27 5.29 -51.93 -0.27 1.00 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.43 5.53 8.19 -40.82 -0.33 5.20 16 36 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -35.94 361.92 -6.73 -42.67 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.60 Total: 3.87 kcal Atomic # 6 Polarization: 26.82 SS G_CDS: -1.77 Total: 25.05 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: 0.09 Total: -66.90 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.23 Total: -26.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.94 -6.73 -42.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328085043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.557 kcal (2) G-P(sol) polarization free energy of solvation -35.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds