Wall clock time and date at job start Tue Mar 31 2020 12:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.46851 * 2 1 4 4 C 1.46498 * 120.00398 * 274.63629 * 3 2 1 5 5 C 1.50701 * 109.46881 * 264.38951 * 4 3 2 6 6 H 1.08008 * 120.00139 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00249 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00179 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47275 * 89.99968 * 9 7 5 11 11 H 1.48502 * 109.47115 * 210.00257 * 9 7 5 12 12 H 1.48502 * 109.47052 * 330.00076 * 9 7 5 13 13 C 1.34781 * 119.99581 * 94.63350 * 3 2 1 14 14 O 1.21357 * 119.99837 * 354.58363 * 13 3 2 15 15 C 1.49382 * 119.99661 * 174.58224 * 13 3 2 16 16 O 1.21339 * 120.00249 * 357.90472 * 15 13 3 17 17 N 1.34786 * 119.99831 * 177.90080 * 15 13 3 18 18 C 1.38912 * 120.00139 * 184.02326 * 17 15 13 19 19 C 1.39563 * 120.52925 * 174.64264 * 18 17 15 20 20 C 1.38181 * 118.33487 * 179.69554 * 19 18 17 21 21 N 1.32529 * 119.18461 * 0.28189 * 20 19 18 22 22 C 1.31776 * 120.99788 * 359.97438 * 21 20 19 23 23 C 1.50697 * 119.08264 * 180.02562 * 22 21 20 24 24 O 1.42893 * 109.47500 * 89.99942 * 23 22 21 25 25 C 1.42904 * 114.00223 * 180.02562 * 24 23 22 26 26 N 1.31762 * 121.83621 * 359.97438 * 22 21 20 27 27 H 1.09002 * 109.47111 * 299.99083 * 1 2 3 28 28 H 1.08994 * 109.47531 * 59.99658 * 1 2 3 29 29 H 1.09001 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47111 * 240.00917 * 2 1 3 31 31 H 1.08999 * 109.47476 * 119.99869 * 2 1 3 32 32 H 1.09004 * 109.46734 * 24.38229 * 4 3 2 33 33 H 1.08999 * 109.47139 * 144.38990 * 4 3 2 34 34 H 0.97008 * 119.99699 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99639 * 4.02143 * 17 15 13 36 36 H 1.08001 * 120.83184 * 359.97012 * 19 18 17 37 37 H 1.07991 * 120.40945 * 180.25229 * 20 19 18 38 38 H 1.09002 * 109.47166 * 210.00435 * 23 22 21 39 39 H 1.09005 * 109.46917 * 329.99817 * 23 22 21 40 40 H 1.08998 * 109.46817 * 60.00027 * 25 24 23 41 41 H 1.09000 * 109.46742 * 179.97438 * 25 24 23 42 42 H 1.08997 * 109.46646 * 300.00022 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1658 2.1062 -1.2645 5 6 3.5906 1.9965 -1.7431 6 1 4.3140 1.4426 -1.1631 7 6 3.9707 2.6032 -2.9214 8 7 5.2142 2.5079 -3.3388 9 14 2.7194 3.5606 -3.9249 10 1 2.7136 4.9792 -3.4859 11 1 3.0797 3.4891 -5.3638 12 1 1.3699 2.9745 -3.7229 13 6 2.3318 1.9852 1.1635 14 8 2.1175 1.4215 2.2166 15 6 2.9430 3.3482 1.1565 16 8 3.1923 3.8960 0.1029 17 7 3.2175 3.9696 2.3206 18 6 3.7078 5.2693 2.3155 19 6 3.8906 5.9629 3.5127 20 6 4.3870 7.2511 3.4551 21 7 4.6658 7.7841 2.2742 22 6 4.4769 7.1044 1.1612 23 6 4.8091 7.7523 -0.1582 24 8 6.1701 7.4768 -0.4950 25 6 6.5894 8.0497 -1.7352 26 7 4.0067 5.8735 1.1698 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.4978 1.6752 -2.0103 33 1 1.9130 3.1556 -1.1133 34 1 5.4814 2.9345 -4.1680 35 1 3.0726 3.5092 3.1621 36 1 3.6543 5.5025 4.4607 37 1 4.5454 7.8169 4.3612 38 1 4.1550 7.3537 -0.9336 39 1 4.6650 8.8300 -0.0801 40 1 6.4825 9.1334 -1.6894 41 1 7.6334 7.7953 -1.9183 42 1 5.9723 7.6574 -2.5435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328085043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:24 Heat of formation + Delta-G solvation = -50.444862 kcal Electronic energy + Delta-G solvation = -27949.995410 eV Core-core repulsion = 23931.465930 eV Total energy + Delta-G solvation = -4018.529479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.54565 -41.56391 -39.66679 -38.80504 -37.62178 -36.31870 -34.66026 -34.28972 -32.73087 -32.21972 -29.67264 -29.27978 -27.11815 -26.88814 -25.05685 -24.64275 -23.83073 -22.88482 -21.02102 -19.31271 -19.13460 -18.88789 -18.03387 -17.74621 -17.66936 -17.03933 -16.61683 -16.55332 -16.43143 -16.34943 -16.12636 -15.73734 -15.32922 -14.93926 -14.82725 -14.74076 -14.39437 -13.90060 -13.68910 -13.54187 -13.33419 -13.24945 -12.77811 -12.72075 -12.58902 -12.42928 -12.27733 -12.10726 -11.88790 -11.80175 -11.67731 -11.22664 -10.83105 -10.80110 -10.67310 -9.94203 -9.93285 -9.66306 -8.25407 -6.26566 -0.34532 0.02552 0.60028 1.14101 1.33362 1.40005 1.43788 2.10020 2.26161 2.36666 2.44384 2.84586 3.05049 3.12855 3.33798 3.40707 3.66327 4.04269 4.12451 4.16890 4.26340 4.31573 4.40035 4.44753 4.46856 4.48874 4.52517 4.66002 4.77729 4.81596 4.90095 4.97535 5.03676 5.29380 5.39239 5.44203 5.50250 5.62646 6.02453 6.04516 6.14827 6.34763 6.66294 6.68904 6.94520 7.16206 7.34691 8.92086 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.005731 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.533402 B = 4884.842035 C = 7150.119771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.561 5.561 4 C 0.214 3.786 5 C -0.507 4.507 6 H 0.023 0.977 7 C 0.023 3.977 8 N -0.946 5.946 9 Si 0.937 3.063 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.236 1.236 13 C 0.510 3.490 14 O -0.550 6.550 15 C 0.474 3.526 16 O -0.424 6.424 17 N -0.627 5.627 18 C 0.379 3.621 19 C -0.233 4.233 20 C 0.168 3.832 21 N -0.536 5.536 22 C 0.327 3.673 23 C 0.134 3.866 24 O -0.412 6.412 25 C 0.030 3.970 26 N -0.541 5.541 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.264 0.736 35 H 0.441 0.559 36 H 0.198 0.802 37 H 0.225 0.775 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.113 8.550 12.546 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 N -0.291 5.291 4 C 0.092 3.908 5 C -0.546 4.546 6 H 0.041 0.959 7 C -0.175 4.175 8 N -0.587 5.587 9 Si 0.761 3.239 10 H -0.205 1.205 11 H -0.207 1.207 12 H -0.159 1.159 13 C 0.292 3.708 14 O -0.431 6.431 15 C 0.254 3.746 16 O -0.288 6.288 17 N -0.279 5.279 18 C 0.140 3.860 19 C -0.258 4.258 20 C 0.005 3.995 21 N -0.254 5.254 22 C 0.058 3.942 23 C 0.056 3.944 24 O -0.330 6.330 25 C -0.066 4.066 26 N -0.263 5.263 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.283 0.717 36 H 0.216 0.784 37 H 0.242 0.758 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.673 8.851 11.312 15.838 hybrid contribution -0.128 -0.344 0.005 0.367 sum -6.801 8.507 11.318 15.707 Atomic orbital electron populations 1.22043 0.93384 1.03795 1.01940 1.21760 0.96127 0.80323 1.03676 1.48004 1.59694 1.14858 1.06557 1.19946 0.96095 0.93327 0.81390 1.21163 0.94533 1.32486 1.06388 0.95860 1.25581 0.96873 0.96370 0.98636 1.70048 1.18987 1.46253 1.23410 0.85885 0.80851 0.79586 0.77601 1.20486 1.20661 1.15937 1.19773 0.79902 0.86487 0.84648 1.90643 1.55608 1.66478 1.30383 1.20735 0.81386 0.87904 0.84584 1.91037 1.43324 1.64467 1.29926 1.43149 1.62279 1.11653 1.10844 1.19103 0.90296 0.85761 0.90862 1.22788 1.06691 0.97720 0.98605 1.23898 0.87648 0.91523 0.96421 1.68241 1.19239 1.38767 0.99182 1.22696 0.90791 0.85853 0.94898 1.21005 0.84142 0.99392 0.89888 1.87865 1.26641 1.77305 1.41222 1.22954 1.01107 0.98629 0.83895 1.68137 1.15927 1.11867 1.30406 0.92945 0.92454 0.88674 0.89699 0.89872 0.93295 0.93447 0.92733 0.71714 0.78443 0.75820 0.92243 0.87721 0.90838 0.88523 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 10.24 71.98 0.74 -3.19 16 2 C 0.10 3.36 6.12 86.38 0.53 3.89 16 3 N -0.56 -23.05 2.47 -827.79 -2.05 -25.09 16 4 C 0.21 10.06 3.84 85.63 0.33 10.38 16 5 C -0.51 -29.33 8.34 25.60 0.21 -29.12 16 6 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 7 C 0.02 1.38 5.47 84.65 0.46 1.84 16 8 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 9 Si 0.94 45.04 27.47 68.60 1.88 46.92 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 13 C 0.51 20.66 7.68 87.25 0.67 21.32 16 14 O -0.55 -21.13 16.04 -3.27 -0.05 -21.18 16 15 C 0.47 19.78 7.68 87.25 0.67 20.45 16 16 O -0.42 -21.34 10.44 -3.21 -0.03 -21.37 16 17 N -0.63 -20.21 5.37 -309.30 -1.66 -21.88 16 18 C 0.38 12.20 7.45 133.04 0.99 13.19 16 19 C -0.23 -4.74 10.04 22.58 0.23 -4.51 16 20 C 0.17 3.30 11.29 84.57 0.95 4.26 16 21 N -0.54 -15.29 10.33 -188.08 -1.94 -17.23 16 22 C 0.33 11.60 7.27 138.76 1.01 12.61 16 23 C 0.13 4.48 6.37 71.24 0.45 4.94 16 24 O -0.41 -15.10 10.69 -148.98 -1.59 -16.69 16 25 C 0.03 0.82 11.01 113.37 1.25 2.07 16 26 N -0.54 -21.77 7.94 -185.25 -1.47 -23.24 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.78 8.11 -2.39 -0.02 2.76 16 31 H 0.08 2.66 7.36 -2.39 -0.02 2.64 16 32 H 0.05 2.14 7.08 -2.39 -0.02 2.12 16 33 H 0.05 2.34 5.29 -2.39 -0.01 2.32 16 34 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 35 H 0.44 10.75 8.19 -92.71 -0.76 9.99 16 36 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.23 1.89 8.06 -2.92 -0.02 1.86 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.11 2.71 8.14 -2.38 -0.02 2.69 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -84.24 361.92 2.12 -82.12 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.24 Total: 19.97 kcal Atomic # 6 Polarization: 49.62 SS G_CDS: 8.49 Total: 58.12 kcal Atomic # 7 Polarization: -141.06 SS G_CDS: -6.82 Total: -147.88 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -1.68 Total: -59.25 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -84.24 2.12 -82.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328085043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.672 kcal (2) G-P(sol) polarization free energy of solvation -84.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds