Wall clock time and date at job start Tue Mar 31 2020 12:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 111.00618 * 2 1 4 4 C 1.50701 * 109.46895 * 293.95606 * 3 2 1 5 5 C 1.39873 * 126.03736 * 269.68443 * 4 3 2 6 6 N 1.30844 * 108.19865 * 179.81645 * 5 4 3 7 7 N 1.40081 * 108.20783 * 0.44635 * 6 5 4 8 8 C 1.46497 * 126.03824 * 179.69817 * 7 6 5 9 9 C 1.34958 * 107.92423 * 359.71125 * 7 6 5 10 10 C 1.46906 * 110.99911 * 123.95556 * 2 1 3 11 11 N 1.46505 * 109.47015 * 66.04268 * 10 2 1 12 12 N 1.40166 * 126.14366 * 90.02669 * 11 10 2 13 13 C 1.32244 * 107.75396 * 179.97438 * 12 11 10 14 14 C 1.40124 * 125.92232 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99675 * 179.97438 * 14 13 12 16 16 C 1.40035 * 119.99901 * 359.97438 * 14 13 12 17 17 N 1.30798 * 120.00353 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99824 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47087 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47355 * 120.00090 * 18 16 14 21 21 H 1.48501 * 109.47168 * 239.99896 * 18 16 14 22 22 N 1.38502 * 108.14945 * 0.02562 * 13 12 11 23 23 C 1.46495 * 125.83206 * 180.02562 * 22 13 12 24 24 C 1.34730 * 108.32675 * 359.97438 * 22 13 12 25 25 S 1.71200 * 125.96777 * 180.02562 * 24 22 13 26 26 H 1.08999 * 109.46738 * 296.04720 * 1 2 3 27 27 H 1.09000 * 109.46852 * 56.04299 * 1 2 3 28 28 H 1.09001 * 109.47068 * 176.04725 * 1 2 3 29 29 H 1.09005 * 109.47042 * 53.95277 * 3 2 1 30 30 H 1.08998 * 109.47307 * 173.95124 * 3 2 1 31 31 H 1.07999 * 125.89657 * 0.02562 * 5 4 3 32 32 H 1.09006 * 109.46833 * 270.01679 * 8 7 6 33 33 H 1.08996 * 109.47457 * 30.02102 * 8 7 6 34 34 H 1.08997 * 109.47082 * 150.02377 * 8 7 6 35 35 H 1.07998 * 126.12373 * 179.97438 * 9 7 6 36 36 H 1.08999 * 109.46954 * 306.04676 * 10 2 1 37 37 H 1.08996 * 109.47089 * 186.03957 * 10 2 1 38 38 H 0.97003 * 120.00215 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47841 * 89.99712 * 23 22 13 40 40 H 1.09005 * 109.46566 * 209.99516 * 23 22 13 41 41 H 1.09001 * 109.47319 * 329.99447 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6371 2.0470 -1.2984 5 6 2.4091 2.0507 -2.4648 6 7 1.7680 2.7353 -3.3771 7 7 0.5708 3.1982 -2.8161 8 6 -0.4409 4.0119 -3.4947 9 6 0.5142 2.7624 -1.5401 10 6 1.9955 -0.7660 1.1376 11 7 1.6468 -2.1800 0.9774 12 7 2.4160 -3.1521 0.3233 13 6 1.7616 -4.2991 0.3944 14 6 2.1887 -5.5235 -0.1365 15 1 1.5754 -6.4051 -0.0220 16 6 3.4107 -5.6041 -0.8157 17 7 4.1532 -4.5363 -0.9549 18 14 3.9797 -7.2362 -1.5241 19 1 2.9662 -8.2820 -1.2338 20 1 4.1500 -7.1056 -2.9935 21 1 5.2755 -7.6186 -0.9077 22 7 0.5810 -4.0802 1.0846 23 6 -0.4364 -5.0903 1.3856 24 6 0.5288 -2.7797 1.4328 25 16 -0.7364 -2.0216 2.3020 26 1 -0.3633 0.4513 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 1.5613 1.9273 0.8309 30 1 3.0798 1.3442 0.1083 31 1 3.3672 1.5685 -2.5915 32 1 -0.2144 5.0683 -3.3499 33 1 -0.4373 3.7822 -4.5601 34 1 -1.4238 3.7909 -3.0786 35 1 -0.2841 2.9512 -0.8377 36 1 1.5611 -0.3873 2.0628 37 1 3.0797 -0.6613 1.1756 38 1 4.9999 -4.5922 -1.4250 39 1 -0.2121 -5.5577 2.3444 40 1 -1.4166 -4.6157 1.4332 41 1 -0.4377 -5.8491 0.6031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339660544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:31 Heat of formation + Delta-G solvation = 176.396079 kcal Electronic energy + Delta-G solvation = -24886.149522 eV Core-core repulsion = 21352.502226 eV Total energy + Delta-G solvation = -3533.647296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16232 -40.85327 -37.25559 -34.30258 -33.86760 -33.14662 -31.07775 -30.14221 -28.04760 -27.79940 -26.55773 -26.12717 -24.75636 -22.41389 -21.09567 -20.97906 -20.83819 -20.01344 -17.76467 -16.88835 -16.50634 -16.03561 -15.71151 -15.45351 -15.06598 -14.90255 -14.59394 -14.46350 -14.18211 -13.73998 -13.26649 -12.94112 -12.86141 -12.66529 -12.35607 -12.23264 -12.18789 -11.78316 -11.63593 -11.53720 -11.29787 -11.22950 -11.02296 -10.62165 -10.51842 -10.49812 -10.05582 -9.51937 -9.35047 -9.21766 -8.85662 -8.39593 -7.98084 -7.01535 -6.78644 -6.63227 -5.11024 1.89910 2.31282 2.53534 2.57184 2.79482 2.87397 2.93488 2.98373 3.39394 3.56260 3.67169 4.10632 4.43967 4.55167 4.83229 4.87527 4.97089 5.13636 5.18235 5.22581 5.28624 5.47125 5.55948 5.65559 5.79880 5.85320 5.87050 6.01734 6.07161 6.11550 6.24275 6.32444 6.55105 6.64630 6.71406 6.83233 7.00591 7.01638 7.25966 7.32829 7.62022 7.75128 7.81855 8.25664 8.38020 9.17376 9.96327 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.003864 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.565770 B = 7245.137769 C = 8769.608237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.548 5.548 3 C 0.140 3.860 4 C -0.219 4.219 5 C 0.071 3.929 6 N -0.305 5.305 7 N -0.382 5.382 8 C 0.104 3.896 9 C 0.060 3.940 10 C 0.325 3.675 11 N -0.368 5.368 12 N -0.328 5.328 13 C 0.371 3.629 14 C -0.439 4.439 15 H 0.097 0.903 16 C 0.076 3.924 17 N -0.734 5.734 18 Si 0.928 3.072 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.270 1.270 22 N -0.514 5.514 23 C 0.100 3.900 24 C 0.465 3.535 25 S -0.718 6.718 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.183 0.817 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.170 0.830 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.285 0.715 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 8.885 -2.758 9.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.274 5.274 3 C 0.011 3.989 4 C -0.231 4.231 5 C -0.115 4.115 6 N -0.126 5.126 7 N -0.164 5.164 8 C -0.037 4.037 9 C -0.087 4.087 10 C 0.113 3.887 11 N -0.153 5.153 12 N -0.159 5.159 13 C 0.122 3.878 14 C -0.480 4.480 15 H 0.115 0.885 16 C -0.151 4.151 17 N -0.359 5.359 18 Si 0.751 3.249 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.195 1.195 22 N -0.215 5.215 23 C -0.043 4.043 24 C 0.095 3.905 25 S -0.594 6.594 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.200 0.800 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.187 0.813 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.221 10.280 -4.382 11.394 hybrid contribution -0.127 -1.443 0.931 1.722 sum -2.349 8.837 -3.451 9.773 Atomic orbital electron populations 1.22554 0.85993 1.03120 0.99787 1.61878 1.09343 1.12943 1.43190 1.20161 1.00023 0.86475 0.92252 1.19862 0.97134 1.07901 0.98242 1.23805 1.00146 0.96996 0.90592 1.77346 0.94591 1.18341 1.22331 1.48410 1.16909 1.41824 1.09248 1.21793 0.88820 0.94106 0.99027 1.22331 0.99931 0.98910 0.87549 1.21693 0.99910 0.74635 0.92467 1.49170 1.14241 1.09321 1.42565 1.79447 1.15052 0.93421 1.28010 1.21356 0.80261 0.95697 0.90501 1.18378 1.04870 0.91904 1.32873 0.88498 1.25828 0.95543 0.98932 0.94756 1.69885 1.09611 1.28951 1.27405 0.85927 0.79428 0.80458 0.79103 1.18229 1.19501 1.19513 1.45977 1.20200 1.07463 1.47865 1.21751 0.90883 0.90058 1.01602 1.22889 0.90983 0.85191 0.91469 1.92693 1.34813 1.73413 1.58459 0.94226 0.92835 0.91080 0.94056 0.89841 0.79961 0.91028 0.89475 0.89655 0.81266 0.90827 0.87912 0.90380 0.91508 0.89260 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 8.04 60.07 0.48 1.09 16 2 N -0.55 -9.69 4.89 -248.30 -1.21 -10.90 16 3 C 0.14 1.92 5.45 -4.98 -0.03 1.90 16 4 C -0.22 -3.04 4.99 -105.05 -0.52 -3.56 16 5 C 0.07 1.03 11.96 -17.36 -0.21 0.83 16 6 N -0.30 -4.59 12.58 30.63 0.39 -4.20 16 7 N -0.38 -4.77 4.01 -68.16 -0.27 -5.04 16 8 C 0.10 0.81 11.47 59.85 0.69 1.50 16 9 C 0.06 0.73 9.92 -17.22 -0.17 0.56 16 10 C 0.32 6.18 5.98 -63.30 -0.38 5.80 16 11 N -0.37 -8.51 3.58 -65.05 -0.23 -8.74 16 12 N -0.33 -8.45 10.77 31.21 0.34 -8.11 16 13 C 0.37 9.21 7.50 -155.27 -1.16 8.04 16 14 C -0.44 -10.30 8.98 -38.20 -0.34 -10.65 16 15 H 0.10 2.05 7.11 -52.49 -0.37 1.68 16 16 C 0.08 1.73 5.50 -17.32 -0.10 1.63 16 17 N -0.73 -17.90 11.90 55.55 0.66 -17.24 16 18 Si 0.93 16.76 29.56 -169.99 -5.02 11.73 16 19 H -0.26 -4.52 7.11 56.52 0.40 -4.11 16 20 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 21 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 22 N -0.51 -11.70 3.17 -124.66 -0.39 -12.09 16 23 C 0.10 1.80 10.65 59.84 0.64 2.43 16 24 C 0.46 10.93 6.61 -86.94 -0.57 10.35 16 25 S -0.72 -17.00 27.10 -107.50 -2.91 -19.91 16 26 H 0.04 0.71 7.82 -51.93 -0.41 0.31 16 27 H 0.05 0.90 6.10 -51.93 -0.32 0.58 16 28 H 0.07 1.57 5.70 -51.93 -0.30 1.27 16 29 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 31 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.07 1.37 7.62 -51.93 -0.40 0.98 16 37 H 0.10 1.82 7.93 -51.93 -0.41 1.41 16 38 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.09 1.58 7.62 -51.93 -0.40 1.18 16 41 H 0.08 1.33 7.32 -51.93 -0.38 0.95 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -32.64 356.17 -10.46 -43.11 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.48 Total: 6.11 kcal Atomic # 6 Polarization: 21.60 SS G_CDS: -1.68 Total: 19.92 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -0.73 Total: -66.33 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.02 Total: 11.73 kcal Atomic # 16 Polarization: -17.00 SS G_CDS: -2.91 Total: -19.91 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.64 -10.46 -43.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339660544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.503 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds