Wall clock time and date at job start Tue Mar 31 2020 12:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 111.00618 * 2 1 4 4 C 1.50701 * 109.46895 * 293.95606 * 3 2 1 5 5 C 1.39873 * 126.03736 * 269.68443 * 4 3 2 6 6 N 1.30844 * 108.19865 * 179.81645 * 5 4 3 7 7 N 1.40081 * 108.20783 * 0.44635 * 6 5 4 8 8 C 1.46497 * 126.03824 * 179.69817 * 7 6 5 9 9 C 1.34958 * 107.92423 * 359.71125 * 7 6 5 10 10 C 1.46906 * 110.99911 * 123.95556 * 2 1 3 11 11 N 1.46505 * 109.47015 * 66.04268 * 10 2 1 12 12 N 1.40166 * 126.14366 * 90.02669 * 11 10 2 13 13 C 1.32244 * 107.75396 * 179.97438 * 12 11 10 14 14 C 1.40124 * 125.92232 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99675 * 179.97438 * 14 13 12 16 16 C 1.40035 * 119.99901 * 359.97438 * 14 13 12 17 17 N 1.30798 * 120.00353 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99824 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47087 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47355 * 120.00090 * 18 16 14 21 21 H 1.48501 * 109.47168 * 239.99896 * 18 16 14 22 22 N 1.38502 * 108.14945 * 0.02562 * 13 12 11 23 23 C 1.46495 * 125.83206 * 180.02562 * 22 13 12 24 24 C 1.34730 * 108.32675 * 359.97438 * 22 13 12 25 25 S 1.71200 * 125.96777 * 180.02562 * 24 22 13 26 26 H 1.08999 * 109.46738 * 296.04720 * 1 2 3 27 27 H 1.09000 * 109.46852 * 56.04299 * 1 2 3 28 28 H 1.09001 * 109.47068 * 176.04725 * 1 2 3 29 29 H 1.09005 * 109.47042 * 53.95277 * 3 2 1 30 30 H 1.08998 * 109.47307 * 173.95124 * 3 2 1 31 31 H 1.07999 * 125.89657 * 0.02562 * 5 4 3 32 32 H 1.09006 * 109.46833 * 270.01679 * 8 7 6 33 33 H 1.08996 * 109.47457 * 30.02102 * 8 7 6 34 34 H 1.08997 * 109.47082 * 150.02377 * 8 7 6 35 35 H 1.07998 * 126.12373 * 179.97438 * 9 7 6 36 36 H 1.08999 * 109.46954 * 306.04676 * 10 2 1 37 37 H 1.08996 * 109.47089 * 186.03957 * 10 2 1 38 38 H 0.97003 * 120.00215 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47841 * 89.99712 * 23 22 13 40 40 H 1.09005 * 109.46566 * 209.99516 * 23 22 13 41 41 H 1.09001 * 109.47319 * 329.99447 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6371 2.0470 -1.2984 5 6 2.4091 2.0507 -2.4648 6 7 1.7680 2.7353 -3.3771 7 7 0.5708 3.1982 -2.8161 8 6 -0.4409 4.0119 -3.4947 9 6 0.5142 2.7624 -1.5401 10 6 1.9955 -0.7660 1.1376 11 7 1.6468 -2.1800 0.9774 12 7 2.4160 -3.1521 0.3233 13 6 1.7616 -4.2991 0.3944 14 6 2.1887 -5.5235 -0.1365 15 1 1.5754 -6.4051 -0.0220 16 6 3.4107 -5.6041 -0.8157 17 7 4.1532 -4.5363 -0.9549 18 14 3.9797 -7.2362 -1.5241 19 1 2.9662 -8.2820 -1.2338 20 1 4.1500 -7.1056 -2.9935 21 1 5.2755 -7.6186 -0.9077 22 7 0.5810 -4.0802 1.0846 23 6 -0.4364 -5.0903 1.3856 24 6 0.5288 -2.7797 1.4328 25 16 -0.7364 -2.0216 2.3020 26 1 -0.3633 0.4513 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 1.5613 1.9273 0.8309 30 1 3.0798 1.3442 0.1083 31 1 3.3672 1.5685 -2.5915 32 1 -0.2144 5.0683 -3.3499 33 1 -0.4373 3.7822 -4.5601 34 1 -1.4238 3.7909 -3.0786 35 1 -0.2841 2.9512 -0.8377 36 1 1.5611 -0.3873 2.0628 37 1 3.0797 -0.6613 1.1756 38 1 4.9999 -4.5922 -1.4250 39 1 -0.2121 -5.5577 2.3444 40 1 -1.4166 -4.6157 1.4332 41 1 -0.4377 -5.8491 0.6031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339660544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:31 Heat of formation + Delta-G solvation = 156.413050 kcal Electronic energy + Delta-G solvation = -24887.016051 eV Core-core repulsion = 21352.502226 eV Total energy + Delta-G solvation = -3534.513825 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.62857 -42.13733 -38.65021 -35.93853 -35.51151 -34.12579 -32.60769 -31.48831 -29.56173 -28.88893 -28.24610 -27.40641 -26.04870 -23.94262 -22.67679 -22.55311 -21.95764 -21.06380 -19.48147 -18.40181 -17.68695 -17.53397 -17.38080 -16.72319 -16.43391 -16.38717 -15.95694 -15.81197 -15.27107 -15.13236 -14.62491 -14.05627 -13.98685 -13.72494 -13.64388 -13.48091 -13.41951 -13.29810 -13.03981 -12.97614 -12.78268 -12.65644 -12.43432 -12.40495 -11.93167 -11.71030 -11.57951 -11.33871 -10.88180 -10.63856 -10.34338 -9.51346 -9.27989 -8.74908 -8.60748 -8.45679 -6.93713 0.54508 0.82336 0.93831 1.29584 1.46116 1.62415 1.63062 1.71810 1.83971 1.88541 2.14766 2.45338 3.09815 3.15271 3.62820 3.69780 3.95827 4.05938 4.11972 4.18542 4.32861 4.43547 4.44176 4.46135 4.54247 4.60690 4.67517 4.70188 4.75368 4.79919 4.90895 4.92361 5.11966 5.12544 5.16749 5.29167 5.65750 5.77485 5.91215 5.97065 6.13577 6.23853 6.51091 6.60128 6.73036 7.36822 8.27917 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.003864 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.565770 B = 7245.137769 C = 8769.608237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.560 5.560 3 C 0.144 3.856 4 C -0.240 4.240 5 C 0.055 3.945 6 N -0.337 5.337 7 N -0.381 5.381 8 C 0.093 3.907 9 C 0.068 3.932 10 C 0.321 3.679 11 N -0.368 5.368 12 N -0.363 5.363 13 C 0.351 3.649 14 C -0.454 4.454 15 H 0.118 0.882 16 C 0.035 3.965 17 N -0.774 5.774 18 Si 1.005 2.995 19 H -0.244 1.244 20 H -0.270 1.270 21 H -0.267 1.267 22 N -0.518 5.518 23 C 0.095 3.905 24 C 0.454 3.546 25 S -0.733 6.733 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.186 0.814 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.199 0.801 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.291 0.709 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 8.535 -3.063 9.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.286 5.286 3 C 0.017 3.983 4 C -0.252 4.252 5 C -0.130 4.130 6 N -0.159 5.159 7 N -0.163 5.163 8 C -0.046 4.046 9 C -0.080 4.080 10 C 0.110 3.890 11 N -0.154 5.154 12 N -0.195 5.195 13 C 0.102 3.898 14 C -0.495 4.495 15 H 0.135 0.865 16 C -0.188 4.188 17 N -0.399 5.399 18 Si 0.824 3.176 19 H -0.167 1.167 20 H -0.195 1.195 21 H -0.192 1.192 22 N -0.219 5.219 23 C -0.046 4.046 24 C 0.083 3.917 25 S -0.610 6.610 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.203 0.797 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.216 0.784 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.788 9.961 -4.687 11.357 hybrid contribution 0.014 -1.249 0.990 1.594 sum -2.774 8.713 -3.697 9.863 Atomic orbital electron populations 1.22260 0.86388 1.00565 1.00276 1.61861 1.09029 1.15195 1.42549 1.20213 1.00571 0.84427 0.93101 1.19927 0.98051 1.09191 0.98058 1.23986 1.00659 0.97308 0.91077 1.77277 0.96048 1.19355 1.23219 1.48803 1.16650 1.41369 1.09478 1.22180 0.88853 0.94596 0.99010 1.22769 0.99870 0.97524 0.87827 1.21885 1.00534 0.73398 0.93154 1.49505 1.13784 1.10256 1.41811 1.79343 1.16448 0.94508 1.29209 1.21728 0.80995 0.96078 0.91015 1.18928 1.05670 0.92157 1.32732 0.86460 1.26877 0.95074 1.02512 0.94379 1.69982 1.10278 1.31466 1.28147 0.84783 0.79086 0.75838 0.77856 1.16690 1.19528 1.19179 1.46266 1.20441 1.07836 1.47307 1.22021 0.89791 0.89643 1.03168 1.22961 0.91130 0.85739 0.91860 1.92575 1.35349 1.73825 1.59221 0.94188 0.91533 0.95157 0.92134 0.88960 0.79741 0.89097 0.89435 0.87103 0.78406 0.90503 0.87077 0.89801 0.89980 0.89238 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.92 8.04 127.69 1.03 2.95 16 2 N -0.56 -19.71 4.89 -939.48 -4.60 -24.31 16 3 C 0.14 3.84 5.45 85.56 0.47 4.30 16 4 C -0.24 -6.42 4.99 -20.14 -0.10 -6.52 16 5 C 0.06 1.60 11.96 85.24 1.02 2.62 16 6 N -0.34 -10.01 12.58 -57.02 -0.72 -10.73 16 7 N -0.38 -8.90 4.01 -369.56 -1.48 -10.38 16 8 C 0.09 1.24 11.47 127.77 1.47 2.70 16 9 C 0.07 1.54 9.92 83.54 0.83 2.37 16 10 C 0.32 12.31 5.98 170.80 1.02 13.33 16 11 N -0.37 -17.29 3.58 -359.71 -1.29 -18.58 16 12 N -0.36 -19.02 10.77 -55.16 -0.59 -19.61 16 13 C 0.35 17.50 7.50 133.52 1.00 18.50 16 14 C -0.45 -21.00 8.98 23.16 0.21 -20.79 16 15 H 0.12 4.75 7.11 -2.91 -0.02 4.73 16 16 C 0.03 1.55 5.50 85.28 0.47 2.02 16 17 N -0.77 -37.96 11.90 21.84 0.26 -37.70 16 18 Si 1.01 33.16 29.56 68.60 2.03 35.19 16 19 H -0.24 -7.41 7.11 99.48 0.71 -6.71 16 20 H -0.27 -8.87 7.11 99.48 0.71 -8.17 16 21 H -0.27 -8.62 7.11 99.48 0.71 -7.91 16 22 N -0.52 -23.56 3.17 -548.31 -1.74 -25.30 16 23 C 0.10 3.32 10.65 127.77 1.36 4.68 16 24 C 0.45 21.56 6.61 179.06 1.18 22.75 16 25 S -0.73 -34.73 27.10 -56.49 -1.53 -36.27 16 26 H 0.04 1.41 7.82 -2.39 -0.02 1.39 16 27 H 0.07 2.17 6.10 -2.39 -0.01 2.15 16 28 H 0.03 1.33 5.70 -2.39 -0.01 1.32 16 29 H 0.06 1.39 8.12 -2.38 -0.02 1.37 16 30 H 0.09 2.26 7.93 -2.39 -0.02 2.24 16 31 H 0.19 4.95 8.06 -2.91 -0.02 4.92 16 32 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.20 3.19 8.06 -2.91 -0.02 3.16 16 36 H 0.08 2.87 7.62 -2.39 -0.02 2.85 16 37 H 0.11 3.98 7.93 -2.39 -0.02 3.96 16 38 H 0.29 12.90 8.30 -92.71 -0.77 12.13 16 39 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.09 3.11 7.62 -2.38 -0.02 3.09 16 41 H 0.10 3.16 7.32 -2.39 -0.02 3.14 16 Total: -1.00 -70.97 356.17 1.34 -69.63 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 1.05 Total: 29.15 kcal Atomic # 6 Polarization: 38.96 SS G_CDS: 9.95 Total: 48.91 kcal Atomic # 7 Polarization: -136.46 SS G_CDS: -10.15 Total: -146.61 kcal Atomic # 14 Polarization: 33.16 SS G_CDS: 2.03 Total: 35.19 kcal Atomic # 16 Polarization: -34.73 SS G_CDS: -1.53 Total: -36.27 kcal Total: -70.97 1.34 -69.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339660544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.046 kcal (2) G-P(sol) polarization free energy of solvation -70.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds