Wall clock time and date at job start Tue Mar 31 2020 12:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 109.46818 * 2 1 4 4 C 1.46499 * 120.00016 * 274.99207 * 3 2 1 5 5 C 1.50694 * 109.47293 * 274.63970 * 4 3 2 6 6 H 1.08001 * 120.00332 * 4.89042 * 5 4 3 7 7 C 1.37881 * 119.99878 * 184.88205 * 5 4 3 8 8 N 1.31518 * 119.99981 * 5.19448 * 7 5 4 9 9 Si 1.86801 * 120.00192 * 185.19001 * 7 5 4 10 10 H 1.48490 * 109.47182 * 94.98926 * 9 7 5 11 11 H 1.48504 * 109.47160 * 214.99438 * 9 7 5 12 12 H 1.48505 * 109.47001 * 334.99052 * 9 7 5 13 13 S 1.65603 * 120.00110 * 95.00333 * 3 2 1 14 14 O 1.42102 * 106.40191 * 341.99245 * 13 3 2 15 15 O 1.42100 * 106.40248 * 209.07645 * 13 3 2 16 16 N 1.65600 * 107.22234 * 95.53116 * 13 3 2 17 17 C 1.46506 * 119.99849 * 296.67858 * 16 13 3 18 18 C 1.53782 * 113.61294 * 242.25958 * 17 16 13 19 19 C 1.53783 * 87.07962 * 220.02081 * 18 17 16 20 20 O 1.42902 * 113.61433 * 270.88590 * 19 18 17 21 21 C 1.42891 * 114.00244 * 162.91168 * 20 19 18 22 22 O 1.42901 * 113.61206 * 139.98136 * 19 18 17 23 23 C 1.42898 * 113.99695 * 82.24899 * 22 19 18 24 24 C 1.53782 * 87.08355 * 25.43295 * 19 18 17 25 25 H 1.09005 * 109.46839 * 300.00469 * 1 2 3 26 26 H 1.08998 * 109.46592 * 59.99933 * 1 2 3 27 27 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46952 * 239.99814 * 2 1 3 29 29 H 1.08998 * 109.46556 * 119.99511 * 2 1 3 30 30 H 1.08997 * 109.46605 * 34.64346 * 4 3 2 31 31 H 1.09003 * 109.46648 * 154.63808 * 4 3 2 32 32 H 0.96997 * 119.99872 * 179.97438 * 8 7 5 33 33 H 0.96998 * 119.99983 * 116.67674 * 16 13 3 34 34 H 1.09000 * 112.84779 * 13.57002 * 17 16 13 35 35 H 1.08998 * 113.61021 * 334.56984 * 18 17 16 36 36 H 1.09002 * 113.61388 * 105.47054 * 18 17 16 37 37 H 1.09005 * 109.47082 * 303.64344 * 21 20 19 38 38 H 1.09004 * 109.47232 * 63.64325 * 21 20 19 39 39 H 1.09000 * 109.47235 * 183.63930 * 21 20 19 40 40 H 1.09002 * 109.47145 * 185.26667 * 23 22 19 41 41 H 1.09000 * 109.47022 * 305.26000 * 23 22 19 42 42 H 1.09001 * 109.47878 * 65.26822 * 23 22 19 43 43 H 1.08996 * 113.61725 * 220.02405 * 24 19 18 44 44 H 1.09001 * 113.61275 * 89.11225 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 3.4986 1.7957 -1.8778 6 1 4.1452 1.0628 -1.4183 7 6 3.8993 2.4451 -3.0262 8 7 3.1593 3.4092 -3.5288 9 14 5.4932 1.9555 -3.8683 10 1 5.2030 0.9768 -4.9466 11 1 6.1347 3.1605 -4.4529 12 1 6.4093 1.3400 -2.8746 13 16 2.4123 2.1202 1.4287 14 8 1.7910 1.3619 2.4574 15 8 2.1804 3.5093 1.2392 16 7 4.0453 1.9430 1.6384 17 6 4.6233 0.6055 1.7916 18 6 5.3134 0.3843 3.1480 19 6 6.4056 -0.3778 2.3792 20 8 6.1350 -1.7734 2.2332 21 6 6.9123 -2.4132 1.2191 22 8 7.7282 -0.1140 2.8517 23 6 8.0997 -0.8820 3.9980 24 6 6.0128 0.4577 1.1493 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3657 1.8049 -1.9476 31 1 2.0858 3.1800 -1.0764 32 1 3.4414 3.8662 -4.3365 33 1 4.6192 2.7247 1.6598 34 1 3.9292 -0.1893 1.5185 35 1 5.6677 1.3044 3.6127 36 1 4.7416 -0.2434 3.8315 37 1 6.7595 -1.9029 0.2681 38 1 7.9675 -2.3705 1.4890 39 1 6.6027 -3.4542 1.1267 40 1 9.0788 -0.5579 4.3507 41 1 7.3626 -0.7361 4.7876 42 1 8.1413 -1.9378 3.7303 43 1 6.0056 -0.1108 0.2194 44 1 6.5583 1.3978 1.0678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350875998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:31 Heat of formation + Delta-G solvation = -144.159972 kcal Electronic energy + Delta-G solvation = -27637.381591 eV Core-core repulsion = 23717.939520 eV Total energy + Delta-G solvation = -3919.442071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.38075 -36.82277 -36.45126 -36.11440 -36.01784 -35.19895 -32.73394 -32.03250 -29.93941 -27.24650 -27.08026 -26.63223 -25.43549 -23.28296 -23.00766 -21.70970 -20.03920 -18.97408 -17.90579 -17.08386 -16.84308 -16.39212 -16.28829 -15.78872 -15.65801 -15.02947 -14.81049 -14.63396 -14.37585 -13.90958 -13.80306 -13.41075 -13.07890 -12.90484 -12.63155 -12.18720 -12.13136 -12.09210 -11.93565 -11.85258 -11.65253 -11.47256 -11.44329 -11.33691 -11.06837 -11.05747 -10.96594 -10.71435 -10.50582 -10.38048 -10.10537 -10.05225 -9.81986 -9.75301 -9.12501 -8.50773 -8.07166 -6.12564 -4.18411 1.31122 3.22275 3.29082 3.31055 3.32262 3.37999 3.69123 4.14712 4.34324 4.44340 4.54691 4.77846 5.01526 5.04574 5.20907 5.21726 5.25157 5.28850 5.29369 5.43023 5.47531 5.55881 5.63399 5.70330 5.76141 5.77724 5.84067 5.89245 6.01528 6.09853 6.27152 6.36138 6.46801 6.64546 6.66898 7.22453 7.34270 7.38626 7.47505 7.66588 7.85232 8.14690 8.86526 9.47124 10.95374 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.005876 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.131244 B = 4764.328059 C = 6210.624389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 N -0.991 5.991 4 C 0.245 3.755 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.785 3.215 14 O -0.998 6.998 15 O -0.980 6.980 16 N -1.108 6.108 17 C 0.154 3.846 18 C -0.152 4.152 19 C 0.235 3.765 20 O -0.374 6.374 21 C 0.027 3.973 22 O -0.383 6.383 23 C 0.033 3.967 24 C -0.146 4.146 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.264 0.736 33 H 0.415 0.585 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.211 -10.103 10.899 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.833 5.833 4 C 0.123 3.877 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.793 3.207 14 O -0.982 6.982 15 O -0.965 6.965 16 N -0.864 5.864 17 C 0.045 3.955 18 C -0.192 4.192 19 C 0.157 3.843 20 O -0.294 6.294 21 C -0.069 4.069 22 O -0.304 6.304 23 C -0.063 4.063 24 C -0.185 4.185 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.248 0.752 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.108 0.892 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.434 -9.626 11.347 15.841 hybrid contribution 1.615 -0.247 -1.008 1.920 sum 7.049 -9.872 10.339 15.939 Atomic orbital electron populations 1.22196 0.96891 1.01414 1.02341 1.21044 0.93821 0.83023 1.02134 1.57714 1.78564 1.22820 1.24213 1.19191 0.97037 0.92450 0.78979 1.21555 1.02823 1.23326 1.09955 0.91860 1.24961 0.97149 0.94541 0.97265 1.69947 1.38527 1.22293 1.21880 0.86586 0.83469 0.78110 0.79814 1.20740 1.21215 1.19773 1.01761 0.72812 0.73111 0.73013 1.93549 1.74874 1.73275 1.56453 1.93593 1.84138 1.32302 1.86423 1.55913 1.28754 1.12460 1.89315 1.21625 0.94291 0.84833 0.94732 1.24032 0.96078 1.00404 0.98637 1.23803 0.82521 0.81564 0.96389 1.88002 1.62741 1.21391 1.57247 1.22779 0.95242 0.97797 0.91114 1.88076 1.32531 1.63342 1.46402 1.22602 1.00253 0.95602 0.87824 1.23942 0.96087 1.01416 0.97066 0.92771 0.92049 0.92294 0.90217 0.91737 0.94765 0.92877 0.92620 0.75168 0.86658 0.87428 0.89617 0.92949 0.93700 0.89336 0.89944 0.93720 0.93758 0.89203 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 10.24 37.16 0.38 -2.24 16 2 C 0.13 2.13 6.01 -4.04 -0.02 2.11 16 3 N -0.99 -19.84 2.82 -115.66 -0.33 -20.17 16 4 C 0.25 5.93 5.45 -5.20 -0.03 5.90 16 5 C -0.54 -13.55 9.38 -34.44 -0.32 -13.88 16 6 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 7 C 0.06 1.69 5.45 -17.82 -0.10 1.60 16 8 N -0.89 -25.06 13.29 55.43 0.74 -24.33 16 9 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 S 2.79 54.50 6.03 -107.50 -0.65 53.85 16 14 O -1.00 -20.00 16.72 -57.17 -0.96 -20.95 16 15 O -0.98 -22.66 16.82 -57.17 -0.96 -23.62 16 16 N -1.11 -18.04 5.84 -4.19 -0.02 -18.06 16 17 C 0.15 2.25 4.34 -67.11 -0.29 1.96 16 18 C -0.15 -1.94 7.38 -25.92 -0.19 -2.14 16 19 C 0.24 3.06 1.03 -25.92 -0.03 3.04 16 20 O -0.37 -4.77 9.79 -58.60 -0.57 -5.35 16 21 C 0.03 0.28 10.59 101.05 1.07 1.35 16 22 O -0.38 -4.93 10.41 -58.60 -0.61 -5.54 16 23 C 0.03 0.33 10.65 101.05 1.08 1.41 16 24 C -0.15 -2.05 7.24 -25.92 -0.19 -2.24 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 29 H 0.06 0.98 6.55 -51.93 -0.34 0.64 16 30 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 31 H 0.05 1.44 6.99 -51.93 -0.36 1.08 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.41 6.16 8.94 -34.47 -0.31 5.85 16 34 H 0.12 1.68 7.07 -51.93 -0.37 1.31 16 35 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.57 6.59 -51.93 -0.34 0.23 16 38 H 0.04 0.44 7.62 -51.93 -0.40 0.05 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.42 8.02 -51.93 -0.42 0.00 16 42 H 0.04 0.42 7.21 -51.93 -0.37 0.04 16 43 H 0.09 1.29 6.69 -51.93 -0.35 0.94 16 44 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -31.94 373.51 -8.42 -40.36 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.02 Total: 6.07 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 1.36 Total: -3.13 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.39 Total: -62.56 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -3.10 Total: -55.46 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 54.50 SS G_CDS: -0.65 Total: 53.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.94 -8.42 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350875998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.799 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds