Wall clock time and date at job start Tue Mar 31 2020 12:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46499 * 109.46818 * 2 1 4 4 C 1.46499 * 120.00016 * 274.99207 * 3 2 1 5 5 C 1.50694 * 109.47293 * 274.63970 * 4 3 2 6 6 H 1.08001 * 120.00332 * 4.89042 * 5 4 3 7 7 C 1.37881 * 119.99878 * 184.88205 * 5 4 3 8 8 N 1.31518 * 119.99981 * 5.19448 * 7 5 4 9 9 Si 1.86801 * 120.00192 * 185.19001 * 7 5 4 10 10 H 1.48490 * 109.47182 * 94.98926 * 9 7 5 11 11 H 1.48504 * 109.47160 * 214.99438 * 9 7 5 12 12 H 1.48505 * 109.47001 * 334.99052 * 9 7 5 13 13 S 1.65603 * 120.00110 * 95.00333 * 3 2 1 14 14 O 1.42102 * 106.40191 * 341.99245 * 13 3 2 15 15 O 1.42100 * 106.40248 * 209.07645 * 13 3 2 16 16 N 1.65600 * 107.22234 * 95.53116 * 13 3 2 17 17 C 1.46506 * 119.99849 * 296.67858 * 16 13 3 18 18 C 1.53782 * 113.61294 * 242.25958 * 17 16 13 19 19 C 1.53783 * 87.07962 * 220.02081 * 18 17 16 20 20 O 1.42902 * 113.61433 * 270.88590 * 19 18 17 21 21 C 1.42891 * 114.00244 * 162.91168 * 20 19 18 22 22 O 1.42901 * 113.61206 * 139.98136 * 19 18 17 23 23 C 1.42898 * 113.99695 * 82.24899 * 22 19 18 24 24 C 1.53782 * 87.08355 * 25.43295 * 19 18 17 25 25 H 1.09005 * 109.46839 * 300.00469 * 1 2 3 26 26 H 1.08998 * 109.46592 * 59.99933 * 1 2 3 27 27 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46952 * 239.99814 * 2 1 3 29 29 H 1.08998 * 109.46556 * 119.99511 * 2 1 3 30 30 H 1.08997 * 109.46605 * 34.64346 * 4 3 2 31 31 H 1.09003 * 109.46648 * 154.63808 * 4 3 2 32 32 H 0.96997 * 119.99872 * 179.97438 * 8 7 5 33 33 H 0.96998 * 119.99983 * 116.67674 * 16 13 3 34 34 H 1.09000 * 112.84779 * 13.57002 * 17 16 13 35 35 H 1.08998 * 113.61021 * 334.56984 * 18 17 16 36 36 H 1.09002 * 113.61388 * 105.47054 * 18 17 16 37 37 H 1.09005 * 109.47082 * 303.64344 * 21 20 19 38 38 H 1.09004 * 109.47232 * 63.64325 * 21 20 19 39 39 H 1.09000 * 109.47235 * 183.63930 * 21 20 19 40 40 H 1.09002 * 109.47145 * 185.26667 * 23 22 19 41 41 H 1.09000 * 109.47022 * 305.26000 * 23 22 19 42 42 H 1.09001 * 109.47878 * 65.26822 * 23 22 19 43 43 H 1.08996 * 113.61725 * 220.02405 * 24 19 18 44 44 H 1.09001 * 113.61275 * 89.11225 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 3.4986 1.7957 -1.8778 6 1 4.1452 1.0628 -1.4183 7 6 3.8993 2.4451 -3.0262 8 7 3.1593 3.4092 -3.5288 9 14 5.4932 1.9555 -3.8683 10 1 5.2030 0.9768 -4.9466 11 1 6.1347 3.1605 -4.4529 12 1 6.4093 1.3400 -2.8746 13 16 2.4123 2.1202 1.4287 14 8 1.7910 1.3619 2.4574 15 8 2.1804 3.5093 1.2392 16 7 4.0453 1.9430 1.6384 17 6 4.6233 0.6055 1.7916 18 6 5.3134 0.3843 3.1480 19 6 6.4056 -0.3778 2.3792 20 8 6.1350 -1.7734 2.2332 21 6 6.9123 -2.4132 1.2191 22 8 7.7282 -0.1140 2.8517 23 6 8.0997 -0.8820 3.9980 24 6 6.0128 0.4577 1.1493 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3657 1.8049 -1.9476 31 1 2.0858 3.1800 -1.0764 32 1 3.4414 3.8662 -4.3365 33 1 4.6192 2.7247 1.6598 34 1 3.9292 -0.1893 1.5185 35 1 5.6677 1.3044 3.6127 36 1 4.7416 -0.2434 3.8315 37 1 6.7595 -1.9029 0.2681 38 1 7.9675 -2.3705 1.4890 39 1 6.6027 -3.4542 1.1267 40 1 9.0788 -0.5579 4.3507 41 1 7.3626 -0.7361 4.7876 42 1 8.1413 -1.9378 3.7303 43 1 6.0056 -0.1108 0.2194 44 1 6.5583 1.3978 1.0678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350875998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:30 Heat of formation + Delta-G solvation = -168.152240 kcal Electronic energy + Delta-G solvation = -27638.421974 eV Core-core repulsion = 23717.939520 eV Total energy + Delta-G solvation = -3920.482454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38495 -38.32844 -37.71867 -37.57758 -37.03228 -36.87203 -34.66601 -33.28241 -31.49992 -28.47191 -28.13164 -27.90840 -26.41014 -24.93953 -24.20697 -23.25540 -21.12761 -20.42212 -18.97723 -18.63500 -18.49749 -18.13917 -17.48557 -17.11932 -16.70584 -16.44327 -15.95476 -15.87196 -15.52213 -15.36369 -14.82551 -14.71299 -14.65132 -14.21745 -13.87577 -13.71068 -13.56270 -13.30194 -13.22836 -13.15530 -13.03950 -12.98950 -12.82736 -12.72724 -12.67130 -12.53611 -12.25663 -12.21198 -12.08439 -11.71575 -11.60735 -11.55828 -11.00794 -10.72933 -10.56446 -10.38342 -9.76271 -8.13782 -6.26270 -0.25643 1.44203 1.45488 1.55145 1.95696 2.41775 2.44392 2.57907 2.72341 3.18325 3.37999 3.45757 3.52873 3.69975 3.88399 4.08246 4.37215 4.42180 4.45261 4.47281 4.52395 4.54092 4.56617 4.66190 4.69021 4.73198 4.81057 4.86333 4.90116 4.97330 5.00161 5.16158 5.25154 5.30038 5.42290 5.51799 5.56781 5.78724 5.93266 6.14763 6.15662 6.43381 6.86705 7.43525 8.94443 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.005876 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.131244 B = 4764.328059 C = 6210.624389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.995 5.995 4 C 0.261 3.739 5 C -0.534 4.534 6 H 0.077 0.923 7 C 0.010 3.990 8 N -0.930 5.930 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.256 1.256 13 S 2.799 3.201 14 O -1.001 7.001 15 O -1.020 7.020 16 N -1.101 6.101 17 C 0.143 3.857 18 C -0.146 4.146 19 C 0.242 3.758 20 O -0.383 6.383 21 C 0.021 3.979 22 O -0.397 6.397 23 C 0.027 3.973 24 C -0.149 4.149 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.020 0.980 31 H 0.017 0.983 32 H 0.264 0.736 33 H 0.421 0.579 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.085 0.915 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.773 -12.197 11.740 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.836 5.836 4 C 0.137 3.863 5 C -0.574 4.574 6 H 0.095 0.905 7 C -0.189 4.189 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.180 1.180 13 S 2.807 3.193 14 O -0.984 6.984 15 O -1.005 7.005 16 N -0.860 5.860 17 C 0.034 3.966 18 C -0.185 4.185 19 C 0.164 3.836 20 O -0.303 6.303 21 C -0.074 4.074 22 O -0.318 6.318 23 C -0.068 4.068 24 C -0.188 4.188 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.257 0.743 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.996 -11.755 12.213 18.338 hybrid contribution 1.134 0.342 -1.199 1.685 sum 8.130 -11.413 11.015 17.823 Atomic orbital electron populations 1.22196 0.95912 1.03298 1.01314 1.21332 0.94778 0.81344 1.03371 1.57603 1.79292 1.23976 1.22710 1.18731 0.96464 0.90854 0.80252 1.21859 1.03055 1.22819 1.09627 0.90531 1.25801 1.00442 0.94499 0.98153 1.70088 1.40619 1.23807 1.22515 0.85572 0.79754 0.77538 0.78998 1.20246 1.21810 1.17957 1.01173 0.73433 0.71964 0.72718 1.93538 1.75562 1.73058 1.56278 1.93538 1.85191 1.34874 1.86879 1.55630 1.27593 1.13769 1.89028 1.21861 0.94601 0.83609 0.96484 1.24010 0.95794 1.00996 0.97740 1.23587 0.82789 0.81682 0.95552 1.87989 1.63294 1.21119 1.57910 1.22949 0.95482 0.98667 0.90307 1.88052 1.32188 1.64010 1.47509 1.22803 1.01364 0.95629 0.87019 1.23942 0.95667 1.01688 0.97544 0.93600 0.93266 0.88976 0.89758 0.89626 0.96215 0.96465 0.92751 0.74336 0.86550 0.86492 0.89006 0.93480 0.93167 0.87282 0.88075 0.93237 0.93388 0.89600 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.00 10.24 71.99 0.74 -4.26 16 2 C 0.12 3.79 6.01 86.38 0.52 4.31 16 3 N -0.99 -39.70 2.82 -519.85 -1.47 -41.17 16 4 C 0.26 12.85 5.45 85.63 0.47 13.31 16 5 C -0.53 -26.85 9.38 25.60 0.24 -26.61 16 6 H 0.08 3.57 7.82 -2.91 -0.02 3.55 16 7 C 0.01 0.54 5.45 84.65 0.46 1.00 16 8 N -0.93 -53.49 13.29 21.45 0.28 -53.21 16 9 Si 0.96 41.09 29.54 68.60 2.03 43.11 16 10 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 13 S 2.80 109.10 6.03 -56.49 -0.34 108.76 16 14 O -1.00 -39.09 16.72 -128.00 -2.14 -41.23 16 15 O -1.02 -48.25 16.82 -128.00 -2.15 -50.41 16 16 N -1.10 -34.88 5.84 -167.18 -0.98 -35.85 16 17 C 0.14 3.92 4.34 45.52 0.20 4.12 16 18 C -0.15 -3.43 7.38 31.12 0.23 -3.20 16 19 C 0.24 5.78 1.03 31.12 0.03 5.81 16 20 O -0.38 -8.86 9.79 -126.64 -1.24 -10.10 16 21 C 0.02 0.40 10.59 113.37 1.20 1.60 16 22 O -0.40 -9.29 10.41 -126.64 -1.32 -10.61 16 23 C 0.03 0.47 10.65 113.37 1.21 1.68 16 24 C -0.15 -3.92 7.24 31.12 0.23 -3.70 16 25 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 29 H 0.09 2.41 6.55 -2.39 -0.02 2.40 16 30 H 0.02 1.02 8.11 -2.39 -0.02 1.00 16 31 H 0.02 0.98 6.99 -2.39 -0.02 0.96 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.42 12.26 8.94 -96.75 -0.87 11.40 16 34 H 0.12 3.17 7.07 -2.39 -0.02 3.15 16 35 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 37 H 0.05 0.92 6.59 -2.38 -0.02 0.91 16 38 H 0.05 0.87 7.62 -2.39 -0.02 0.85 16 39 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.05 0.80 8.02 -2.39 -0.02 0.78 16 42 H 0.05 0.78 7.21 -2.39 -0.02 0.77 16 43 H 0.09 2.31 6.69 -2.39 -0.02 2.30 16 44 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -67.91 373.51 -1.68 -69.58 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.13 Total: 27.05 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 5.52 Total: -5.94 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -2.16 Total: -130.23 kcal Atomic # 8 Polarization: -105.50 SS G_CDS: -6.85 Total: -112.35 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 109.10 SS G_CDS: -0.34 Total: 108.76 kcal Total: -67.91 -1.68 -69.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350875998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.569 kcal (2) G-P(sol) polarization free energy of solvation -67.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds