Wall clock time and date at job start Tue Mar 31 2020 13:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99790 * 2 1 4 4 H 1.09007 * 112.85293 * 341.19765 * 3 2 1 5 5 C 1.54052 * 113.69561 * 112.46512 * 3 2 1 6 6 C 1.53784 * 86.98597 * 139.98895 * 5 3 2 7 7 H 1.09000 * 113.61096 * 219.98351 * 6 5 3 8 8 N 1.46501 * 113.61173 * 89.16372 * 6 5 3 9 9 C 1.34779 * 119.99830 * 105.86286 * 8 6 5 10 10 O 1.21364 * 119.99834 * 0.02562 * 9 8 6 11 11 C 1.49340 * 120.00068 * 179.97438 * 9 8 6 12 12 O 1.21385 * 119.99589 * 0.02562 * 11 9 8 13 13 N 1.34771 * 119.99827 * 179.97438 * 11 9 8 14 14 C 1.39936 * 119.99556 * 180.02562 * 13 11 9 15 15 C 1.40454 * 125.98113 * 0.02562 * 14 13 11 16 16 C 1.35221 * 107.86676 * 179.76065 * 15 14 13 17 17 N 1.34992 * 107.87532 * 0.42465 * 16 15 14 18 18 C 1.46500 * 125.97245 * 179.83937 * 17 16 15 19 19 C 1.50696 * 109.46944 * 124.71518 * 18 17 16 20 20 H 1.07999 * 120.00202 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99746 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99573 * 0.27650 * 21 19 18 23 23 Si 1.86800 * 119.99781 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47364 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.46883 * 120.00040 * 23 21 19 26 26 H 1.48497 * 109.46870 * 239.99850 * 23 21 19 27 27 N 1.31273 * 125.97629 * 180.02562 * 14 13 11 28 28 C 1.53781 * 87.17414 * 334.57497 * 6 5 3 29 29 H 1.08992 * 109.47090 * 299.99702 * 1 2 3 30 30 H 1.09002 * 109.46913 * 60.00024 * 1 2 3 31 31 H 1.08997 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.09007 * 113.60839 * 25.48482 * 5 3 2 33 33 H 1.08995 * 113.70083 * 254.51229 * 5 3 2 34 34 H 0.96996 * 119.99712 * 285.86407 * 8 6 5 35 35 H 0.96996 * 120.00700 * 0.02562 * 13 11 9 36 36 H 1.08001 * 126.06753 * 359.97438 * 15 14 13 37 37 H 1.08003 * 126.06413 * 180.26599 * 16 15 14 38 38 H 1.09000 * 109.46609 * 4.71700 * 18 17 16 39 39 H 1.08999 * 109.46486 * 244.71779 * 18 17 16 40 40 H 0.97001 * 120.00651 * 359.71956 * 22 21 19 41 41 H 1.08995 * 113.61823 * 140.02005 * 28 6 5 42 42 H 1.09005 * 113.61405 * 270.92633 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7544 1.6518 1.3036 6 6 3.8220 2.3200 0.4211 7 1 4.8424 2.1438 0.7613 8 7 3.5515 3.7322 0.1406 9 6 4.2706 4.6913 0.7568 10 8 5.1424 4.3849 1.5436 11 6 3.9953 6.1310 0.4706 12 8 3.1237 6.4373 -0.3167 13 7 4.7140 7.0899 1.0871 14 6 4.4557 8.4389 0.8193 15 6 3.4821 8.9331 -0.0643 16 6 3.5451 10.2835 -0.0379 17 7 4.5257 10.6359 0.8203 18 6 4.9332 12.0049 1.1461 19 6 4.8624 12.2085 2.6376 20 1 4.5451 11.3993 3.2786 21 6 5.2017 13.4283 3.1837 22 7 5.5819 14.4155 2.4024 23 14 5.1132 13.6810 5.0324 24 1 4.6531 12.4273 5.6819 25 1 6.4587 14.0411 5.5477 26 1 4.1571 14.7755 5.3371 27 7 5.0810 9.4640 1.3498 28 6 3.3755 1.3720 -0.7045 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1189 0.7779 1.8436 33 1 2.2160 2.3514 1.9429 34 1 2.8550 3.9770 -0.4884 35 1 5.4103 6.8452 1.7165 36 1 2.8014 8.3397 -0.6567 37 1 2.9230 10.9602 -0.6049 38 1 4.2658 12.7101 0.6510 39 1 5.9551 12.1706 0.8048 40 1 5.6275 14.2844 1.4424 41 1 3.3381 1.8459 -1.6854 42 1 3.9095 0.4217 -0.7125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351606089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:45 Heat of formation + Delta-G solvation = -3.062133 kcal Electronic energy + Delta-G solvation = -25866.118666 eV Core-core repulsion = 21849.643856 eV Total energy + Delta-G solvation = -4016.474810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31056 -40.61991 -39.68561 -38.43044 -36.80799 -35.20229 -33.78056 -33.19614 -31.01668 -29.52750 -27.54966 -26.83633 -26.27108 -25.61794 -24.10718 -22.96865 -21.63297 -20.68738 -20.12484 -19.78836 -18.47897 -17.47529 -17.25247 -16.89137 -16.44269 -16.22552 -16.12737 -15.69709 -15.55283 -15.12006 -14.63119 -14.33492 -13.97697 -13.82365 -13.61478 -13.35443 -13.10143 -12.98183 -12.83736 -12.56655 -12.36756 -12.05752 -11.72230 -11.57788 -11.47921 -11.20099 -11.02230 -10.86340 -10.62230 -10.21006 -10.14184 -9.97330 -9.70070 -9.61984 -9.06389 -8.61171 -8.35196 -7.68089 -6.62023 -4.36382 1.07480 1.90051 2.52878 2.90090 3.02960 3.31882 3.36312 3.38987 3.54435 3.54858 3.70218 3.91929 4.03143 4.24311 4.32106 4.38125 4.41534 4.84765 4.93650 4.96129 5.11472 5.21938 5.24257 5.27474 5.29391 5.38971 5.45823 5.50810 5.58032 5.92825 5.97001 6.19470 6.28377 6.48080 6.67321 6.72219 6.76564 7.11987 7.22209 7.49153 7.62452 7.72896 7.83400 8.30199 8.40763 8.57098 9.31809 10.75898 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.002019 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.773411 B =13864.972442 C =14138.735283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.058 3.942 4 H 0.089 0.911 5 C -0.166 4.166 6 C 0.119 3.881 7 H 0.116 0.884 8 N -0.686 5.686 9 C 0.521 3.479 10 O -0.510 6.510 11 C 0.513 3.487 12 O -0.500 6.500 13 N -0.597 5.597 14 C 0.252 3.748 15 C -0.283 4.283 16 C 0.053 3.947 17 N -0.312 5.312 18 C 0.247 3.753 19 C -0.609 4.609 20 H 0.065 0.935 21 C 0.023 3.977 22 N -0.905 5.905 23 Si 1.082 2.918 24 H -0.287 1.287 25 H -0.284 1.284 26 H -0.285 1.285 27 N -0.291 5.291 28 C -0.141 4.141 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.414 0.586 35 H 0.424 0.576 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.048 0.952 39 H 0.037 0.963 40 H 0.268 0.732 41 H 0.082 0.918 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.453 -26.075 -7.587 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.000 4.000 4 H 0.107 0.893 5 C -0.205 4.205 6 C 0.014 3.986 7 H 0.134 0.866 8 N -0.340 5.340 9 C 0.301 3.699 10 O -0.384 6.384 11 C 0.293 3.707 12 O -0.373 6.373 13 N -0.246 5.246 14 C -0.001 4.001 15 C -0.314 4.314 16 C -0.097 4.097 17 N -0.094 5.094 18 C 0.129 3.871 19 C -0.647 4.647 20 H 0.083 0.917 21 C -0.181 4.181 22 N -0.540 5.540 23 Si 0.909 3.091 24 H -0.213 1.213 25 H -0.210 1.210 26 H -0.211 1.211 27 N -0.122 5.122 28 C -0.179 4.179 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.251 0.749 35 H 0.262 0.738 36 H 0.180 0.820 37 H 0.188 0.812 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.133 -24.637 -5.555 26.244 hybrid contribution -1.128 -1.053 -1.750 2.333 sum -8.260 -25.690 -7.306 27.957 Atomic orbital electron populations 1.22814 0.80965 1.02876 1.00148 1.87935 1.19842 1.27143 1.94556 1.23921 0.93938 0.85520 0.96590 0.89286 1.24039 0.97602 1.01330 0.97507 1.21742 1.00867 0.78882 0.97159 0.86595 1.45387 1.38260 1.04977 1.45360 1.19883 0.82189 0.86392 0.81442 1.90805 1.31048 1.83072 1.33471 1.19877 0.82594 0.86262 0.81957 1.90710 1.30734 1.82439 1.33394 1.41986 1.37024 1.02034 1.43517 1.19008 0.98311 0.83710 0.99084 1.21521 1.07111 0.93197 1.09618 1.22590 0.94489 0.96170 0.96431 1.48881 1.24724 1.06260 1.29548 1.19827 0.96397 0.71757 0.99074 1.22159 1.50848 1.01344 0.90396 0.91677 1.25935 0.92938 0.91652 1.07622 1.70796 1.43614 1.33494 1.06129 0.83344 0.77046 0.75554 0.73130 1.21313 1.20969 1.21072 1.77434 1.22829 0.89781 1.22157 1.23613 0.95722 1.00294 0.98235 0.93876 0.93874 0.89604 0.87838 0.90481 0.74934 0.73838 0.82009 0.81219 0.93434 0.94568 0.92205 0.89928 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.85 101.05 1.10 1.25 16 2 O -0.38 -2.87 10.72 -35.23 -0.38 -3.24 16 3 C 0.06 0.37 4.20 -25.77 -0.11 0.26 16 4 H 0.09 0.48 7.87 -51.92 -0.41 0.07 16 5 C -0.17 -1.13 7.73 -25.77 -0.20 -1.33 16 6 C 0.12 0.85 4.30 -67.12 -0.29 0.56 16 7 H 0.12 0.92 7.50 -51.93 -0.39 0.53 16 8 N -0.69 -5.84 5.26 -53.48 -0.28 -6.12 16 9 C 0.52 6.12 7.89 -11.64 -0.09 6.03 16 10 O -0.51 -7.02 16.09 5.48 0.09 -6.94 16 11 C 0.51 7.18 7.85 -11.64 -0.09 7.09 16 12 O -0.50 -7.49 13.60 5.47 0.07 -7.42 16 13 N -0.60 -9.53 5.43 -11.58 -0.06 -9.59 16 14 C 0.25 4.95 8.10 -154.55 -1.25 3.70 16 15 C -0.28 -5.30 9.60 -39.82 -0.38 -5.68 16 16 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 17 N -0.31 -7.12 3.67 -62.56 -0.23 -7.35 16 18 C 0.25 6.14 5.57 -5.20 -0.03 6.11 16 19 C -0.61 -16.96 9.23 -34.44 -0.32 -17.27 16 20 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 21 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 22 N -0.90 -26.09 13.65 55.43 0.76 -25.34 16 23 Si 1.08 24.93 29.90 -169.99 -5.08 19.85 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 N -0.29 -6.66 12.42 31.41 0.39 -6.27 16 28 C -0.14 -0.78 7.65 -25.92 -0.20 -0.98 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.41 2.96 8.17 -40.82 -0.33 2.63 16 35 H 0.42 6.21 8.29 -40.82 -0.34 5.87 16 36 H 0.16 2.81 5.91 -52.49 -0.31 2.49 16 37 H 0.17 2.58 8.06 -52.48 -0.42 2.15 16 38 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 39 H 0.04 0.93 8.01 -51.93 -0.42 0.52 16 40 H 0.27 7.52 7.22 -40.82 -0.29 7.23 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -33.22 365.72 -6.86 -40.09 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -5.49 Total: 5.72 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -2.16 Total: 1.09 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.57 Total: -54.66 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.22 Total: -17.60 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.22 -6.86 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351606089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.024 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds