Wall clock time and date at job start Tue Mar 31 2020 13:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47194 * 85.19118 * 3 2 1 5 5 H 1.48505 * 109.46937 * 205.18934 * 3 2 1 6 6 H 1.48498 * 109.47234 * 325.19077 * 3 2 1 7 7 C 1.39942 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00077 * 196.30937 * 7 2 1 9 9 C 1.41400 * 120.00205 * 16.29869 * 7 2 1 10 10 C 1.40732 * 120.23872 * 26.16263 * 9 7 2 11 11 C 1.37600 * 119.74097 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24898 * 0.02562 * 11 10 9 13 13 C 1.38606 * 120.50471 * 0.02562 * 12 11 10 14 14 C 1.37645 * 120.24649 * 359.65965 * 13 12 11 15 15 C 1.50703 * 120.13007 * 180.32491 * 14 13 12 16 16 C 1.50692 * 109.47000 * 265.30719 * 15 14 13 17 17 O 1.21283 * 120.00716 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99931 * 180.02562 * 16 15 14 19 19 C 1.46503 * 120.00051 * 180.02562 * 18 16 15 20 20 C 1.50703 * 109.47120 * 179.97438 * 19 18 16 21 21 C 1.32560 * 120.00063 * 124.99598 * 20 19 18 22 22 C 1.47820 * 119.99700 * 179.97438 * 21 20 19 23 23 C 1.39962 * 120.55387 * 180.02562 * 22 21 20 24 24 C 1.38366 * 118.29430 * 180.02562 * 23 22 21 25 25 C 1.38334 * 119.30430 * 359.97438 * 24 23 22 26 26 N 1.31897 * 121.07252 * 0.02718 * 25 24 23 27 27 C 1.31719 * 121.87604 * 359.64830 * 26 25 24 28 28 H 0.97002 * 120.00001 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.13238 * 359.97135 * 10 9 7 30 30 H 1.07998 * 119.87209 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.74769 * 179.97438 * 12 11 10 32 32 H 1.07994 * 119.87846 * 179.97438 * 13 12 11 33 33 H 1.09000 * 109.46646 * 25.30567 * 15 14 13 34 34 H 1.08997 * 109.47028 * 145.30773 * 15 14 13 35 35 H 0.97002 * 119.99800 * 359.97438 * 18 16 15 36 36 H 1.08994 * 109.47116 * 299.99651 * 19 18 16 37 37 H 1.08997 * 109.47258 * 59.99818 * 19 18 16 38 38 H 1.08000 * 119.99802 * 304.99903 * 20 19 18 39 39 H 1.07996 * 119.99724 * 0.02562 * 21 20 19 40 40 H 1.08008 * 120.85114 * 359.97438 * 23 22 21 41 41 H 1.07997 * 120.34481 * 180.02562 * 24 23 22 42 42 H 1.07996 * 119.46579 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.72137 * 180.33909 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3881 2.1051 1.3951 5 1 3.5870 1.4129 -0.5959 6 1 1.4942 2.6212 -0.7992 7 6 2.0079 -1.2119 -0.0005 8 1 3.0553 -1.2309 0.2621 9 6 1.3436 -2.4118 -0.3447 10 6 0.2148 -2.3810 -1.1847 11 6 -0.4242 -3.5547 -1.5126 12 6 0.0398 -4.7643 -1.0184 13 6 1.1500 -4.8063 -0.1896 14 6 1.8087 -3.6454 0.1464 15 6 3.0198 -3.6949 1.0419 16 6 2.6000 -3.4515 2.4685 17 8 1.4323 -3.2565 2.7323 18 7 3.5222 -3.4495 3.4514 19 6 3.1139 -3.2134 4.8385 20 6 4.3251 -3.2628 5.7339 21 6 4.6025 -2.2402 6.5305 22 6 5.7902 -2.2890 7.4092 23 6 6.0938 -1.2162 8.2553 24 6 7.2171 -1.3112 9.0576 25 6 7.9965 -2.4526 8.9990 26 7 7.6858 -3.4483 8.1917 27 6 6.6237 -3.4076 7.4137 28 1 -0.4850 0.8401 0.0004 29 1 -0.1491 -1.4399 -1.5696 30 1 -1.2908 -3.5336 -2.1567 31 1 -0.4681 -5.6806 -1.2807 32 1 1.5024 -5.7540 0.1899 33 1 3.4896 -4.6754 0.9637 34 1 3.7296 -2.9264 0.7359 35 1 4.4561 -3.6051 3.2405 36 1 2.6434 -2.2333 4.9169 37 1 2.4047 -3.9824 5.1444 38 1 4.9670 -4.1313 5.7266 39 1 3.9604 -1.3719 6.5381 40 1 5.4679 -0.3364 8.2806 41 1 7.4822 -0.5031 9.7232 42 1 8.8740 -2.5294 9.6238 43 1 6.3991 -4.2451 6.7700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363376715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:30 Heat of formation + Delta-G solvation = 8.331483 kcal Electronic energy + Delta-G solvation = -24931.941017 eV Core-core repulsion = 21326.809534 eV Total energy + Delta-G solvation = -3605.131483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04301 -40.68157 -39.12713 -36.96122 -35.46021 -34.82605 -33.47311 -33.14172 -31.39269 -31.21153 -28.77516 -27.17961 -26.36713 -24.72125 -23.62899 -22.81105 -22.08205 -21.22814 -20.46202 -19.05917 -18.28415 -17.80912 -17.40330 -17.09151 -16.80885 -16.63192 -16.15240 -15.99635 -15.32280 -15.27802 -14.92188 -14.90323 -14.55593 -14.37218 -14.08271 -14.00403 -13.78273 -13.53710 -13.27378 -12.93487 -12.75737 -12.62615 -12.52503 -12.44151 -12.41762 -12.10073 -11.75760 -11.30251 -11.15863 -10.99911 -10.77738 -10.56429 -10.41569 -10.00708 -9.31038 -9.20235 -9.14145 -8.55695 -6.24716 -0.27873 0.31195 1.01252 1.14358 1.36043 1.38889 1.48858 1.54617 1.92819 2.21182 2.55307 2.83293 2.96643 3.43898 3.61865 3.77880 3.86726 3.97575 4.07443 4.17735 4.19830 4.31097 4.42096 4.50475 4.53420 4.62220 4.65719 4.73551 4.80628 4.84491 4.86480 5.04980 5.10185 5.19642 5.26822 5.38501 5.48843 5.52265 5.57228 5.67920 5.77673 5.81181 6.06234 6.16418 6.23826 6.45575 6.72656 6.79374 7.00190 7.01273 7.14352 7.53508 8.42010 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.002674 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.424425 B =10468.411455 C =11944.711326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.030 3.970 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.249 1.249 6 H -0.270 1.270 7 C -0.483 4.483 8 H 0.083 0.917 9 C 0.096 3.904 10 C -0.196 4.196 11 C -0.117 4.117 12 C -0.245 4.245 13 C -0.091 4.091 14 C -0.187 4.187 15 C -0.068 4.068 16 C 0.515 3.485 17 O -0.574 6.574 18 N -0.722 5.722 19 C 0.150 3.850 20 C -0.143 4.143 21 C -0.099 4.099 22 C -0.116 4.116 23 C -0.075 4.075 24 C -0.167 4.167 25 C 0.082 3.918 26 N -0.512 5.512 27 C 0.091 3.909 28 H 0.282 0.718 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.415 0.585 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.142 0.858 39 H 0.127 0.873 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.178 0.822 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.616 -1.964 15.548 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.184 4.184 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.172 1.172 6 H -0.195 1.195 7 C -0.513 4.513 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.216 4.216 11 C -0.135 4.135 12 C -0.264 4.264 13 C -0.109 4.109 14 C -0.189 4.189 15 C -0.107 4.107 16 C 0.303 3.697 17 O -0.452 6.452 18 N -0.377 5.377 19 C 0.027 3.973 20 C -0.161 4.161 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.100 4.100 24 C -0.186 4.186 25 C -0.074 4.074 26 N -0.220 5.220 27 C -0.066 4.066 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.118 0.882 35 H 0.252 0.748 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.183 0.817 42 H 0.195 0.805 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 15.115 -2.413 15.737 21.953 hybrid contribution -0.611 1.577 -0.175 1.700 sum 14.505 -0.836 15.563 21.290 Atomic orbital electron populations 1.69942 1.09225 1.29898 1.36854 1.26770 0.95382 1.04603 0.91643 0.85320 0.79678 0.76518 0.78973 1.19416 1.17227 1.19489 1.19714 0.97600 0.91772 1.42219 0.89908 1.17760 0.91395 0.92922 0.88582 1.21299 1.00875 0.96672 1.02742 1.20944 0.98963 0.93455 1.00180 1.20718 1.01623 0.96741 1.07350 1.20742 0.95689 0.96903 0.97593 1.19512 1.01734 0.93344 1.04327 1.20300 0.97117 1.04349 0.88962 1.21173 0.85321 0.74961 0.88201 1.90695 1.20832 1.49213 1.84464 1.45869 1.11351 1.74312 1.06169 1.20199 0.95567 1.01014 0.80509 1.23292 0.97107 0.99417 0.96298 1.21679 0.95156 0.98993 0.96006 1.20131 0.96860 0.96206 0.98586 1.22104 0.96720 0.98153 0.93060 1.22440 0.95426 1.00233 1.00546 1.23329 0.99659 0.89091 0.95289 1.67653 1.17522 1.30356 1.06516 1.23248 0.89831 0.97382 0.96177 0.90771 0.88667 0.87859 0.86776 0.86440 0.86604 0.88221 0.74823 0.93068 0.91347 0.84092 0.85541 0.82842 0.81721 0.80489 0.81481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.60 10.98 21.83 0.24 -46.36 16 2 C 0.03 1.55 5.16 85.26 0.44 1.99 16 3 Si 0.97 39.28 29.59 68.60 2.03 41.31 16 4 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.48 -25.96 8.46 23.46 0.20 -25.76 16 8 H 0.08 4.11 6.36 -2.91 -0.02 4.10 16 9 C 0.10 5.26 5.56 -21.29 -0.12 5.14 16 10 C -0.20 -10.98 8.68 22.73 0.20 -10.79 16 11 C -0.12 -5.85 10.02 22.22 0.22 -5.63 16 12 C -0.25 -11.28 10.05 22.46 0.23 -11.05 16 13 C -0.09 -4.11 9.66 22.22 0.21 -3.89 16 14 C -0.19 -8.98 4.43 -19.40 -0.09 -9.06 16 15 C -0.07 -2.52 5.35 29.10 0.16 -2.36 16 16 C 0.52 20.09 7.82 87.65 0.69 20.78 16 17 O -0.57 -29.37 16.03 -3.04 -0.05 -29.42 16 18 N -0.72 -19.84 5.55 -466.79 -2.59 -22.43 16 19 C 0.15 3.80 6.12 85.63 0.52 4.32 16 20 C -0.14 -2.48 9.06 24.54 0.22 -2.25 16 21 C -0.10 -1.68 9.54 23.66 0.23 -1.46 16 22 C -0.12 -1.94 5.88 -20.02 -0.12 -2.06 16 23 C -0.07 -1.04 9.94 22.72 0.23 -0.81 16 24 C -0.17 -1.94 10.10 22.32 0.23 -1.72 16 25 C 0.08 1.17 11.17 84.71 0.95 2.12 16 26 N -0.51 -9.87 10.35 -194.80 -2.02 -11.88 16 27 C 0.09 1.60 10.58 85.01 0.90 2.50 16 28 H 0.28 14.41 8.30 -92.71 -0.77 13.64 16 29 H 0.10 5.58 6.23 -2.91 -0.02 5.57 16 30 H 0.10 4.61 8.06 -2.91 -0.02 4.58 16 31 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 32 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.12 3.28 8.05 -2.39 -0.02 3.26 16 34 H 0.10 3.53 6.48 -2.39 -0.02 3.52 16 35 H 0.41 8.16 8.46 -92.71 -0.78 7.37 16 36 H 0.05 1.51 7.81 -2.39 -0.02 1.49 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.14 1.83 6.07 -2.91 -0.02 1.81 16 39 H 0.13 2.11 7.87 -2.91 -0.02 2.09 16 40 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.17 2.34 6.19 -2.91 -0.02 2.32 16 Total: -1.00 -76.15 369.71 3.16 -72.99 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: 0.26 Total: 35.79 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 5.29 Total: -40.00 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -4.37 Total: -80.67 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.05 Total: -29.42 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -76.15 3.16 -72.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363376715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.325 kcal (2) G-P(sol) polarization free energy of solvation -76.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds