Wall clock time and date at job start Tue Mar 31 2020 13:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 119.99753 * 2 1 4 4 H 1.48496 * 109.47104 * 239.99887 * 3 2 1 5 5 H 1.48497 * 109.47358 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46820 * 120.00220 * 3 2 1 7 7 C 1.39943 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99902 * 183.14504 * 7 2 1 9 9 C 1.41388 * 120.00261 * 3.15490 * 7 2 1 10 10 C 1.40744 * 120.24603 * 325.83493 * 9 7 2 11 11 C 1.37588 * 119.74625 * 180.31992 * 10 9 7 12 12 C 1.38664 * 120.25052 * 359.66424 * 11 10 9 13 13 C 1.38616 * 120.49985 * 0.02562 * 12 11 10 14 14 C 1.37635 * 120.24530 * 0.02833 * 13 12 11 15 15 C 1.50700 * 120.12383 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47445 * 265.00021 * 15 14 13 17 17 O 1.21284 * 119.99747 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00411 * 180.02562 * 16 15 14 19 19 C 1.46497 * 120.00215 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47249 * 179.97438 * 19 18 16 21 21 C 1.32561 * 120.00225 * 126.96634 * 20 19 18 22 22 C 1.47817 * 119.99735 * 8.74623 * 21 20 19 23 23 C 1.39952 * 120.56031 * 40.33990 * 22 21 20 24 24 C 1.38375 * 118.29528 * 180.02562 * 23 22 21 25 25 C 1.38334 * 119.30503 * 0.02562 * 24 23 22 26 26 N 1.31898 * 121.07134 * 0.02562 * 25 24 23 27 27 C 1.31722 * 121.87562 * 359.66051 * 26 25 24 28 28 H 0.97003 * 120.00225 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.12034 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.88035 * 179.68136 * 11 10 9 31 31 H 1.08001 * 119.75075 * 180.02562 * 12 11 10 32 32 H 1.07995 * 119.87461 * 180.02562 * 13 12 11 33 33 H 1.09003 * 109.47321 * 25.00416 * 15 14 13 34 34 H 1.09001 * 109.47173 * 144.99697 * 15 14 13 35 35 H 0.97003 * 120.00012 * 0.02562 * 18 16 15 36 36 H 1.08993 * 109.47272 * 300.00114 * 19 18 16 37 37 H 1.09003 * 109.46683 * 60.00373 * 19 18 16 38 38 H 1.08002 * 119.99808 * 306.96726 * 20 19 18 39 39 H 1.08001 * 120.00645 * 188.73877 * 21 20 19 40 40 H 1.07996 * 120.85414 * 359.97438 * 23 22 21 41 41 H 1.08008 * 120.34433 * 180.02562 * 24 23 22 42 42 H 1.07995 * 119.46147 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.71681 * 180.33292 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0867 -1.2127 0.0519 9 6 1.3026 -2.4355 -0.0663 10 6 0.0458 -2.5642 0.5540 11 6 -0.6286 -3.7616 0.4882 12 6 -0.0778 -4.8371 -0.1920 13 6 1.1563 -4.7199 -0.8122 14 6 1.8492 -3.5319 -0.7583 15 6 3.1910 -3.4077 -1.4330 16 6 4.2841 -3.6745 -0.4304 17 8 4.0014 -3.9390 0.7189 18 7 5.5758 -3.6182 -0.8108 19 6 6.6384 -3.8771 0.1640 20 6 7.9802 -3.7530 -0.5108 21 6 8.9078 -2.9556 0.0001 22 6 8.7029 -2.3395 1.3280 23 6 8.1307 -3.0742 2.3727 24 6 7.9601 -2.4510 3.5963 25 6 8.3562 -1.1341 3.7465 26 7 8.8920 -0.4658 2.7435 27 6 9.0804 -1.0170 1.5621 28 1 -0.4850 0.8401 0.0004 29 1 -0.3853 -1.7275 1.0838 30 1 -1.5909 -3.8643 0.9678 31 1 -0.6144 -5.7732 -0.2390 32 1 1.5757 -5.5639 -1.3395 33 1 3.2579 -4.1318 -2.2449 34 1 3.3040 -2.4006 -1.8343 35 1 5.8020 -3.4055 -1.7298 36 1 6.5711 -3.1529 0.9757 37 1 6.5257 -4.8843 0.5653 38 1 8.1860 -4.3137 -1.4106 39 1 9.8132 -2.7562 -0.5538 40 1 7.8293 -4.1010 2.2274 41 1 7.5222 -2.9871 4.4254 42 1 8.2246 -0.6453 4.7005 43 1 9.5271 -0.4390 0.7667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363376716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:33 Heat of formation + Delta-G solvation = 13.110814 kcal Electronic energy + Delta-G solvation = -25836.953795 eV Core-core repulsion = 22232.029559 eV Total energy + Delta-G solvation = -3604.924235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.23132 -40.68561 -39.15160 -37.17576 -35.44487 -34.74686 -33.40679 -32.98355 -31.33714 -31.14127 -28.93700 -27.31547 -26.48001 -24.42111 -24.16572 -22.77208 -22.13486 -21.17663 -20.21157 -19.05394 -18.22979 -17.72098 -17.56975 -17.25864 -16.81379 -16.53914 -16.16684 -15.97374 -15.71435 -15.35332 -14.98020 -14.80730 -14.55582 -14.39423 -14.33118 -13.87707 -13.61885 -13.44084 -13.36230 -13.18719 -12.87156 -12.76963 -12.60645 -12.47793 -12.13391 -12.09794 -11.36920 -11.33361 -11.29809 -11.01154 -10.82968 -10.64339 -10.38928 -9.96151 -9.44727 -9.16871 -9.08517 -8.47916 -6.34968 -0.17305 0.27592 0.97941 1.12891 1.24717 1.33899 1.43728 1.49832 1.84387 2.20363 2.53443 2.82922 2.87514 3.49578 3.71231 3.73751 3.88702 3.91038 3.98921 4.14312 4.15736 4.28906 4.41093 4.43949 4.53122 4.63193 4.69669 4.72520 4.79271 4.81528 4.93293 5.05607 5.08286 5.16295 5.22036 5.39956 5.41674 5.51503 5.56501 5.69051 5.77079 5.80265 6.03739 6.18850 6.21671 6.43662 6.68183 6.77622 6.96845 7.01853 7.11972 7.45420 8.44393 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010849 B = 0.003963 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.196136 B = 7063.614640 C = 8461.351014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.972 3.028 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.274 1.274 7 C -0.483 4.483 8 H 0.063 0.937 9 C 0.088 3.912 10 C -0.182 4.182 11 C -0.125 4.125 12 C -0.229 4.229 13 C -0.099 4.099 14 C -0.175 4.175 15 C -0.071 4.071 16 C 0.515 3.485 17 O -0.576 6.576 18 N -0.720 5.720 19 C 0.133 3.867 20 C -0.147 4.147 21 C -0.094 4.094 22 C -0.121 4.121 23 C -0.076 4.076 24 C -0.179 4.179 25 C 0.082 3.918 26 N -0.514 5.514 27 C 0.096 3.904 28 H 0.282 0.718 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.415 0.585 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.143 0.857 41 H 0.153 0.847 42 H 0.172 0.828 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.692 -5.004 -3.083 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.199 1.199 7 C -0.514 4.514 8 H 0.081 0.919 9 C 0.086 3.914 10 C -0.202 4.202 11 C -0.143 4.143 12 C -0.248 4.248 13 C -0.117 4.117 14 C -0.176 4.176 15 C -0.111 4.111 16 C 0.303 3.697 17 O -0.455 6.455 18 N -0.375 5.375 19 C 0.010 3.990 20 C -0.165 4.165 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.101 4.101 24 C -0.198 4.198 25 C -0.074 4.074 26 N -0.223 5.223 27 C -0.061 4.061 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.252 0.748 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.177 0.823 39 H 0.181 0.819 40 H 0.161 0.839 41 H 0.170 0.830 42 H 0.189 0.811 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 18.534 -4.159 -2.115 19.113 hybrid contribution -0.431 0.084 0.041 0.441 sum 18.103 -4.075 -2.074 18.672 Atomic orbital electron populations 1.69846 1.08442 1.29616 1.39099 1.26611 0.95623 1.03882 0.91945 0.85403 0.78769 0.76715 0.79733 1.17701 1.19127 1.19924 1.19475 0.93885 0.90980 1.47035 0.91870 1.17769 0.92296 0.92602 0.88690 1.21554 0.98387 0.96734 1.03535 1.21020 0.99084 0.93999 1.00239 1.20810 0.98369 0.98648 1.06965 1.20772 0.95104 0.96157 0.99701 1.19673 0.97530 0.95506 1.04941 1.20311 0.89692 1.04391 0.96692 1.21142 0.84123 0.75192 0.89201 1.90662 1.83750 1.49048 1.22017 1.45892 1.04464 1.72611 1.14498 1.20687 0.85696 1.00836 0.91800 1.23392 0.92295 0.98776 1.01997 1.21843 1.01252 0.95791 0.92466 1.20365 1.00383 0.95611 0.95973 1.22103 0.94464 1.00983 0.92593 1.22395 1.01311 0.96891 0.99244 1.23179 0.93806 0.92018 0.98370 1.67620 1.14162 1.39113 1.01379 1.23362 0.95964 0.92266 0.94510 0.90754 0.87779 0.87622 0.86409 0.86200 0.86518 0.88533 0.74795 0.92865 0.91523 0.82287 0.81907 0.83905 0.82960 0.81050 0.80544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.01 10.61 21.83 0.23 -45.78 16 2 C 0.03 1.64 5.41 85.26 0.46 2.10 16 3 Si 0.97 40.68 29.56 68.60 2.03 42.71 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.48 -26.77 7.93 23.46 0.19 -26.59 16 8 H 0.06 3.47 6.96 -2.91 -0.02 3.45 16 9 C 0.09 4.92 5.55 -21.29 -0.12 4.80 16 10 C -0.18 -10.27 8.67 22.73 0.20 -10.08 16 11 C -0.13 -6.21 10.02 22.22 0.22 -5.99 16 12 C -0.23 -10.36 10.05 22.46 0.23 -10.13 16 13 C -0.10 -4.42 9.66 22.22 0.21 -4.21 16 14 C -0.17 -8.40 4.43 -19.41 -0.09 -8.49 16 15 C -0.07 -2.69 5.21 29.10 0.15 -2.54 16 16 C 0.52 19.59 7.42 87.66 0.65 20.24 16 17 O -0.58 -28.00 16.03 -3.04 -0.05 -28.05 16 18 N -0.72 -19.25 5.55 -466.80 -2.59 -21.84 16 19 C 0.13 3.19 4.52 85.63 0.39 3.58 16 20 C -0.15 -2.14 9.58 24.54 0.23 -1.91 16 21 C -0.09 -1.34 9.80 23.66 0.23 -1.11 16 22 C -0.12 -2.49 5.06 -20.02 -0.10 -2.59 16 23 C -0.08 -1.68 7.49 22.72 0.17 -1.51 16 24 C -0.18 -4.00 10.10 22.33 0.23 -3.78 16 25 C 0.08 1.94 11.17 84.71 0.95 2.88 16 26 N -0.51 -13.50 10.35 -194.79 -2.02 -15.52 16 27 C 0.10 2.14 10.95 85.01 0.93 3.07 16 28 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 29 H 0.10 6.20 6.14 -2.91 -0.02 6.18 16 30 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 31 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.12 3.36 8.05 -2.39 -0.02 3.34 16 34 H 0.10 3.65 7.22 -2.39 -0.02 3.64 16 35 H 0.42 7.89 8.46 -92.71 -0.78 7.11 16 36 H 0.05 1.59 4.98 -2.39 -0.01 1.57 16 37 H 0.07 1.66 8.06 -2.39 -0.02 1.64 16 38 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.14 2.87 6.73 -2.91 -0.02 2.85 16 41 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 42 H 0.17 3.18 8.06 -2.91 -0.02 3.15 16 43 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -75.76 365.80 2.99 -72.77 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.25 Total: 37.94 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 5.13 Total: -42.23 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -4.37 Total: -83.13 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.05 Total: -28.05 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -75.76 2.99 -72.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363376716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.879 kcal (2) G-P(sol) polarization free energy of solvation -75.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds