Wall clock time and date at job start Tue Mar 31 2020 13:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 116.99834 * 2 1 4 4 O 1.20818 * 120.00118 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99670 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.84869 * 311.19587 * 5 3 2 7 7 C 1.53780 * 113.61118 * 82.50305 * 5 3 2 8 8 C 1.53782 * 87.07784 * 139.97814 * 7 5 3 9 9 H 1.09003 * 113.69116 * 89.12710 * 8 7 5 10 10 N 1.46504 * 113.61296 * 220.01487 * 8 7 5 11 11 C 1.34774 * 119.99819 * 252.49451 * 10 8 7 12 12 O 1.21588 * 120.00269 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99549 * 179.97438 * 11 10 8 14 14 C 1.40195 * 119.99823 * 180.02562 * 13 11 10 15 15 C 1.40400 * 125.97389 * 0.02562 * 14 13 11 16 16 C 1.35243 * 107.86658 * 179.97438 * 15 14 13 17 17 N 1.34957 * 107.86350 * 359.97438 * 16 15 14 18 18 C 1.46495 * 125.97986 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47457 * 125.00410 * 18 17 16 20 20 H 1.07997 * 119.99757 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00412 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00115 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99888 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47208 * 89.99754 * 23 21 19 25 25 H 1.48500 * 109.47261 * 210.00212 * 23 21 19 26 26 H 1.48504 * 109.47023 * 330.00079 * 23 21 19 27 27 N 1.31215 * 125.96956 * 179.69569 * 14 13 11 28 28 C 1.53778 * 113.61105 * 180.02562 * 5 3 2 29 29 H 1.08998 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47589 * 300.00192 * 1 2 3 31 31 H 1.09006 * 109.46996 * 60.00027 * 1 2 3 32 32 H 1.08999 * 113.61598 * 25.42860 * 7 5 3 33 33 H 1.09002 * 113.61487 * 254.52643 * 7 5 3 34 34 H 0.96996 * 119.99617 * 72.50170 * 10 8 7 35 35 H 0.97005 * 120.00189 * 0.02562 * 13 11 10 36 36 H 1.07996 * 126.06581 * 0.02562 * 15 14 13 37 37 H 1.08003 * 126.06764 * 179.97438 * 16 15 14 38 38 H 1.09010 * 109.47324 * 245.00108 * 18 17 16 39 39 H 1.08999 * 109.47621 * 4.99830 * 18 17 16 40 40 H 0.97007 * 119.99679 * 179.97438 * 22 21 19 41 41 H 1.08998 * 113.61855 * 105.47046 * 28 5 3 42 42 H 1.09004 * 113.61306 * 334.56319 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0233 0.6365 0.7567 7 6 4.1916 1.1232 -1.3962 8 6 5.1813 2.2266 -0.9866 9 1 6.0816 1.8494 -0.5013 10 7 5.4708 3.1826 -2.0583 11 6 6.6691 3.1612 -2.6749 12 8 7.5097 2.3482 -2.3420 13 7 6.9351 4.0404 -3.6612 14 6 8.1814 4.0178 -4.3030 15 6 9.2384 3.1378 -4.0210 16 6 10.2610 3.4373 -4.8538 17 7 9.8709 4.4662 -5.6351 18 6 10.6741 5.1067 -6.6795 19 6 9.9163 5.0826 -7.9818 20 1 8.9346 4.6346 -8.0271 21 6 10.4765 5.6315 -9.1158 22 7 9.8153 5.6100 -10.2524 23 14 12.1748 6.4057 -9.0376 24 1 13.2028 5.3746 -9.3297 25 1 12.2683 7.4963 -10.0412 26 1 12.4033 6.9617 -7.6797 27 7 8.5615 4.8115 -5.2762 28 6 4.1077 2.7142 0.0011 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.5242 1.4143 -2.2073 33 1 4.6620 0.1539 -1.5610 34 1 4.8001 3.8310 -2.3240 35 1 6.2644 4.6888 -3.9270 36 1 9.2351 2.3592 -3.2726 37 1 11.2197 2.9411 -4.8876 38 1 10.8797 6.1395 -6.3978 39 1 11.6145 4.5680 -6.7963 40 1 10.2094 5.9966 -11.0501 41 1 4.5104 3.0289 0.9639 42 1 3.4174 3.4405 -0.4279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364085449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:10 Heat of formation + Delta-G solvation = 0.504686 kcal Electronic energy + Delta-G solvation = -25731.791633 eV Core-core repulsion = 21715.471492 eV Total energy + Delta-G solvation = -4016.320141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.33135 -40.73573 -39.82371 -38.49966 -36.73411 -34.72945 -33.78399 -33.09567 -31.14058 -29.37936 -28.79880 -27.19272 -26.22060 -26.11424 -23.10430 -22.16441 -21.30834 -20.56258 -20.18253 -19.63736 -18.28359 -17.98107 -17.32988 -17.02329 -16.80019 -16.53899 -15.78926 -15.62563 -15.38237 -14.86585 -14.47380 -14.34192 -13.89359 -13.68382 -13.59520 -13.07869 -12.98950 -12.89255 -12.53466 -12.48266 -12.30133 -12.12840 -11.84991 -11.66141 -11.24471 -11.22222 -11.10870 -10.77557 -10.73319 -10.63286 -10.11620 -9.99126 -9.76294 -9.51273 -9.28608 -8.75673 -8.16073 -7.46906 -6.22527 -4.24649 1.74055 2.16127 2.44905 2.59268 3.03505 3.16122 3.23344 3.24119 3.52441 3.75385 3.86124 3.95477 4.23147 4.24488 4.35165 4.37853 4.58085 4.67550 4.75007 5.05338 5.07560 5.11054 5.17891 5.25398 5.40592 5.43749 5.51562 5.69674 5.77539 5.94176 6.14652 6.26855 6.36384 6.47654 6.58813 6.72923 6.95661 7.28911 7.30837 7.44237 7.83333 7.88597 8.35076 8.54576 8.60566 8.87609 9.32563 10.90175 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031579 B = 0.001899 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.455747 B =14737.995619 C =15182.035725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.473 3.527 4 O -0.506 6.506 5 C -0.110 4.110 6 H 0.131 0.869 7 C -0.136 4.136 8 C 0.149 3.851 9 H 0.127 0.873 10 N -0.733 5.733 11 C 0.715 3.285 12 O -0.567 6.567 13 N -0.643 5.643 14 C 0.278 3.722 15 C -0.282 4.282 16 C 0.050 3.950 17 N -0.321 5.321 18 C 0.232 3.768 19 C -0.534 4.534 20 H 0.085 0.915 21 C 0.076 3.924 22 N -0.888 5.888 23 Si 0.873 3.127 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.264 1.264 27 N -0.300 5.300 28 C -0.127 4.127 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.399 0.601 35 H 0.408 0.592 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.088 0.912 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.823 -9.650 22.777 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.316 3.684 4 O -0.393 6.393 5 C -0.129 4.129 6 H 0.149 0.851 7 C -0.175 4.175 8 C 0.043 3.957 9 H 0.144 0.856 10 N -0.388 5.388 11 C 0.414 3.586 12 O -0.443 6.443 13 N -0.293 5.293 14 C 0.024 3.976 15 C -0.313 4.313 16 C -0.099 4.099 17 N -0.102 5.102 18 C 0.113 3.887 19 C -0.572 4.572 20 H 0.104 0.896 21 C -0.128 4.128 22 N -0.525 5.525 23 Si 0.699 3.301 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.189 1.189 27 N -0.131 5.131 28 C -0.166 4.166 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.234 0.766 35 H 0.243 0.757 36 H 0.180 0.820 37 H 0.186 0.814 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.518 -9.017 22.022 27.368 hybrid contribution 0.050 0.424 -0.001 0.427 sum -13.468 -8.593 22.021 27.206 Atomic orbital electron populations 1.23296 0.76232 1.03841 1.02612 1.86528 1.23507 1.33445 1.83869 1.23554 0.91676 0.81311 0.71890 1.90672 1.67018 1.36437 1.45208 1.22326 0.87354 1.01163 1.02092 0.85098 1.23519 0.98163 1.01622 0.94231 1.22260 0.97546 0.88748 0.87143 0.85560 1.44989 1.15322 1.39051 1.39432 1.15651 0.82569 0.81155 0.79196 1.90859 1.46211 1.40288 1.66902 1.41397 1.14474 1.36878 1.36530 1.18793 0.86421 0.97554 0.94868 1.21529 0.92920 1.07864 1.09013 1.22552 1.00556 0.92803 0.93985 1.48585 1.08966 1.25154 1.27517 1.20033 0.89694 0.93540 0.85410 1.21115 1.05444 1.40207 0.90438 0.89648 1.24839 0.97686 0.95221 0.95060 1.69877 1.37968 1.44639 1.00049 0.86903 0.84579 0.79854 0.78739 1.19721 1.20559 1.18862 1.77396 0.95827 1.24185 1.15647 1.23423 0.97371 0.94737 1.01039 0.87984 0.91867 0.91798 0.89030 0.89091 0.76603 0.75714 0.81973 0.81434 0.94074 0.93343 0.92204 0.89328 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.79 10.57 -39.27 -0.41 -3.20 16 3 C 0.47 3.95 7.48 36.01 0.27 4.22 16 4 O -0.51 -5.54 15.65 -18.74 -0.29 -5.83 16 5 C -0.11 -0.66 4.26 -90.96 -0.39 -1.05 16 6 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 7 C -0.14 -0.93 7.43 -25.92 -0.19 -1.12 16 8 C 0.15 1.13 4.24 -67.10 -0.28 0.85 16 9 H 0.13 1.06 7.46 -51.93 -0.39 0.67 16 10 N -0.73 -6.75 5.36 -57.86 -0.31 -7.06 16 11 C 0.71 9.93 8.53 -86.92 -0.74 9.18 16 12 O -0.57 -9.60 13.07 5.29 0.07 -9.53 16 13 N -0.64 -9.74 5.46 -15.51 -0.08 -9.82 16 14 C 0.28 5.51 8.11 -154.36 -1.25 4.26 16 15 C -0.28 -5.45 9.61 -39.84 -0.38 -5.84 16 16 C 0.05 0.97 11.44 -17.24 -0.20 0.77 16 17 N -0.32 -7.25 3.67 -62.56 -0.23 -7.48 16 18 C 0.23 5.50 5.33 -5.20 -0.03 5.48 16 19 C -0.53 -15.08 9.79 -34.44 -0.34 -15.42 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 21 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 22 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 23 Si 0.87 20.13 27.47 -169.99 -4.67 15.46 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 27 N -0.30 -6.85 12.42 31.44 0.39 -6.46 16 28 C -0.13 -0.77 7.16 -25.90 -0.19 -0.95 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.40 2.72 8.74 -40.82 -0.36 2.36 16 35 H 0.41 5.03 8.84 -40.82 -0.36 4.67 16 36 H 0.16 3.05 5.91 -52.49 -0.31 2.74 16 37 H 0.17 2.54 8.06 -52.48 -0.42 2.11 16 38 H 0.04 0.97 7.20 -51.92 -0.37 0.60 16 39 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.69 7.41 -51.93 -0.38 0.31 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -36.41 362.18 -7.59 -44.00 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.53 Total: 6.68 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.75 Total: 3.65 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.54 Total: -56.68 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.64 Total: -18.56 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.41 -7.59 -44.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364085449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.505 kcal (2) G-P(sol) polarization free energy of solvation -36.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds