Wall clock time and date at job start Tue Mar 31 2020 13:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 116.99834 * 2 1 4 4 O 1.20818 * 120.00118 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99670 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.84869 * 311.19587 * 5 3 2 7 7 C 1.53780 * 113.61118 * 82.50305 * 5 3 2 8 8 C 1.53782 * 87.07784 * 139.97814 * 7 5 3 9 9 H 1.09003 * 113.69116 * 89.12710 * 8 7 5 10 10 N 1.46504 * 113.61296 * 220.01487 * 8 7 5 11 11 C 1.34774 * 119.99819 * 252.49451 * 10 8 7 12 12 O 1.21588 * 120.00269 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99549 * 179.97438 * 11 10 8 14 14 C 1.40195 * 119.99823 * 180.02562 * 13 11 10 15 15 C 1.40400 * 125.97389 * 0.02562 * 14 13 11 16 16 C 1.35243 * 107.86658 * 179.97438 * 15 14 13 17 17 N 1.34957 * 107.86350 * 359.97438 * 16 15 14 18 18 C 1.46495 * 125.97986 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47457 * 125.00410 * 18 17 16 20 20 H 1.07997 * 119.99757 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00412 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00115 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99888 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47208 * 89.99754 * 23 21 19 25 25 H 1.48500 * 109.47261 * 210.00212 * 23 21 19 26 26 H 1.48504 * 109.47023 * 330.00079 * 23 21 19 27 27 N 1.31215 * 125.96956 * 179.69569 * 14 13 11 28 28 C 1.53778 * 113.61105 * 180.02562 * 5 3 2 29 29 H 1.08998 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47589 * 300.00192 * 1 2 3 31 31 H 1.09006 * 109.46996 * 60.00027 * 1 2 3 32 32 H 1.08999 * 113.61598 * 25.42860 * 7 5 3 33 33 H 1.09002 * 113.61487 * 254.52643 * 7 5 3 34 34 H 0.96996 * 119.99617 * 72.50170 * 10 8 7 35 35 H 0.97005 * 120.00189 * 0.02562 * 13 11 10 36 36 H 1.07996 * 126.06581 * 0.02562 * 15 14 13 37 37 H 1.08003 * 126.06764 * 179.97438 * 16 15 14 38 38 H 1.09010 * 109.47324 * 245.00108 * 18 17 16 39 39 H 1.08999 * 109.47621 * 4.99830 * 18 17 16 40 40 H 0.97007 * 119.99679 * 179.97438 * 22 21 19 41 41 H 1.08998 * 113.61855 * 105.47046 * 28 5 3 42 42 H 1.09004 * 113.61306 * 334.56319 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0233 0.6365 0.7567 7 6 4.1916 1.1232 -1.3962 8 6 5.1813 2.2266 -0.9866 9 1 6.0816 1.8494 -0.5013 10 7 5.4708 3.1826 -2.0583 11 6 6.6691 3.1612 -2.6749 12 8 7.5097 2.3482 -2.3420 13 7 6.9351 4.0404 -3.6612 14 6 8.1814 4.0178 -4.3030 15 6 9.2384 3.1378 -4.0210 16 6 10.2610 3.4373 -4.8538 17 7 9.8709 4.4662 -5.6351 18 6 10.6741 5.1067 -6.6795 19 6 9.9163 5.0826 -7.9818 20 1 8.9346 4.6346 -8.0271 21 6 10.4765 5.6315 -9.1158 22 7 9.8153 5.6100 -10.2524 23 14 12.1748 6.4057 -9.0376 24 1 13.2028 5.3746 -9.3297 25 1 12.2683 7.4963 -10.0412 26 1 12.4033 6.9617 -7.6797 27 7 8.5615 4.8115 -5.2762 28 6 4.1077 2.7142 0.0011 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.5242 1.4143 -2.2073 33 1 4.6620 0.1539 -1.5610 34 1 4.8001 3.8310 -2.3240 35 1 6.2644 4.6888 -3.9270 36 1 9.2351 2.3592 -3.2726 37 1 11.2197 2.9411 -4.8876 38 1 10.8797 6.1395 -6.3978 39 1 11.6145 4.5680 -6.7963 40 1 10.2094 5.9966 -11.0501 41 1 4.5104 3.0289 0.9639 42 1 3.4174 3.4405 -0.4279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364085449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:09 Heat of formation + Delta-G solvation = -25.569764 kcal Electronic energy + Delta-G solvation = -25732.922306 eV Core-core repulsion = 21715.471492 eV Total energy + Delta-G solvation = -4017.450814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.26208 -41.87936 -40.90942 -39.28654 -37.40994 -36.16025 -35.23160 -34.51519 -32.88348 -30.93773 -29.41299 -28.87588 -26.82747 -26.75545 -24.69213 -23.43373 -22.28215 -21.78976 -21.37888 -20.59821 -19.12888 -19.08975 -18.88448 -18.16285 -17.86695 -17.39776 -16.99122 -16.71132 -16.37645 -16.06341 -15.86563 -15.44892 -15.30181 -14.79182 -14.46183 -14.37045 -14.23124 -13.90195 -13.78455 -13.57969 -13.47294 -12.99376 -12.96239 -12.52787 -12.42363 -12.30553 -12.24302 -11.81925 -11.81405 -11.75088 -11.59173 -11.43932 -11.36494 -11.08372 -10.85596 -10.15539 -9.71213 -9.01263 -8.36224 -6.46313 1.06383 1.09079 1.16390 1.37798 1.41150 1.50726 1.71353 1.75879 2.15957 2.30309 2.41556 2.96352 3.17211 3.30495 3.39803 3.75507 3.82720 3.95959 4.08021 4.24231 4.29651 4.31779 4.54176 4.63014 4.63990 4.70040 4.71346 4.80095 4.87252 4.90924 4.96897 5.00042 5.08870 5.20890 5.27452 5.36824 5.58662 5.84361 5.95161 6.04691 6.44105 6.59209 6.69023 6.74371 7.14246 7.17221 7.43871 8.80862 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031579 B = 0.001899 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.455747 B =14737.995619 C =15182.035725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.472 3.528 4 O -0.537 6.537 5 C -0.101 4.101 6 H 0.157 0.843 7 C -0.134 4.134 8 C 0.142 3.858 9 H 0.123 0.877 10 N -0.714 5.714 11 C 0.714 3.286 12 O -0.596 6.596 13 N -0.640 5.640 14 C 0.284 3.716 15 C -0.292 4.292 16 C 0.060 3.940 17 N -0.346 5.346 18 C 0.240 3.760 19 C -0.546 4.546 20 H 0.026 0.974 21 C 0.013 3.987 22 N -0.943 5.943 23 Si 0.956 3.044 24 H -0.253 1.253 25 H -0.282 1.282 26 H -0.239 1.239 27 N -0.352 5.352 28 C -0.118 4.118 29 H 0.129 0.871 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.413 0.587 35 H 0.419 0.581 36 H 0.170 0.830 37 H 0.210 0.790 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.272 0.728 41 H 0.104 0.896 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.420 -10.152 24.816 29.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.120 4.120 6 H 0.175 0.825 7 C -0.173 4.173 8 C 0.037 3.963 9 H 0.141 0.859 10 N -0.369 5.369 11 C 0.414 3.586 12 O -0.474 6.474 13 N -0.291 5.291 14 C 0.028 3.972 15 C -0.323 4.323 16 C -0.088 4.088 17 N -0.128 5.128 18 C 0.120 3.880 19 C -0.584 4.584 20 H 0.044 0.956 21 C -0.186 4.186 22 N -0.582 5.582 23 Si 0.777 3.223 24 H -0.177 1.177 25 H -0.207 1.207 26 H -0.162 1.162 27 N -0.183 5.183 28 C -0.156 4.156 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.249 0.751 35 H 0.256 0.744 36 H 0.187 0.813 37 H 0.227 0.773 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.185 -9.542 24.114 28.653 hybrid contribution -0.613 0.459 -0.567 0.953 sum -12.798 -9.083 23.547 28.297 Atomic orbital electron populations 1.23530 0.75084 1.05607 1.02428 1.86524 1.24764 1.33156 1.83500 1.23967 0.92457 0.81002 0.70896 1.90661 1.67861 1.37369 1.46761 1.22403 0.85935 1.01548 1.02131 0.82526 1.23476 0.97754 1.01405 0.94656 1.22450 0.97923 0.88902 0.86990 0.85891 1.44935 1.13877 1.39234 1.38835 1.15805 0.83475 0.80485 0.78876 1.90825 1.47540 1.41337 1.67707 1.41463 1.13415 1.37611 1.36622 1.19146 0.87859 0.96474 0.93711 1.21739 0.92998 1.08081 1.09463 1.23254 1.02009 0.91222 0.92314 1.48475 1.09216 1.26677 1.28425 1.19871 0.90213 0.94563 0.83375 1.21244 1.03741 1.40076 0.93388 0.95587 1.25938 1.03073 0.95480 0.94070 1.70057 1.40729 1.46162 1.01223 0.85604 0.77908 0.78923 0.79858 1.17720 1.20702 1.16217 1.77310 0.96892 1.26436 1.17652 1.23361 0.96318 0.94739 1.01154 0.85319 0.91801 0.92282 0.89643 0.88748 0.75057 0.74392 0.81255 0.77285 0.93720 0.90038 0.91923 0.87727 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.36 -5.21 10.57 -51.45 -0.54 -5.75 16 3 C 0.47 7.34 7.48 71.24 0.53 7.87 16 4 O -0.54 -11.42 15.65 21.99 0.34 -11.07 16 5 C -0.10 -1.01 4.26 -11.01 -0.05 -1.06 16 6 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 7 C -0.13 -1.63 7.43 31.12 0.23 -1.40 16 8 C 0.14 1.93 4.24 45.53 0.19 2.13 16 9 H 0.12 1.85 7.46 -2.39 -0.02 1.83 16 10 N -0.71 -12.29 5.36 -455.22 -2.44 -14.73 16 11 C 0.71 19.28 8.53 179.05 1.53 20.80 16 12 O -0.60 -19.68 13.07 -3.99 -0.05 -19.73 16 13 N -0.64 -19.27 5.46 -321.23 -1.75 -21.02 16 14 C 0.28 11.28 8.11 133.31 1.08 12.36 16 15 C -0.29 -11.04 9.61 22.11 0.21 -10.83 16 16 C 0.06 2.20 11.44 83.52 0.96 3.16 16 17 N -0.35 -15.54 3.67 -351.85 -1.29 -16.83 16 18 C 0.24 11.11 5.33 85.63 0.46 11.57 16 19 C -0.55 -31.68 9.79 25.60 0.25 -31.43 16 20 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 21 C 0.01 0.74 5.47 84.65 0.46 1.20 16 22 N -0.94 -58.29 13.96 21.45 0.30 -58.00 16 23 Si 0.96 40.75 27.47 68.60 1.88 42.64 16 24 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 27 N -0.35 -16.42 12.42 -54.43 -0.68 -17.09 16 28 C -0.12 -1.20 7.16 31.13 0.22 -0.97 16 29 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 31 H 0.06 0.63 8.13 -2.38 -0.02 0.61 16 32 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.41 5.10 8.74 -92.71 -0.81 4.29 16 35 H 0.42 10.34 8.84 -92.70 -0.82 9.52 16 36 H 0.17 6.18 5.91 -2.91 -0.02 6.16 16 37 H 0.21 5.61 8.06 -2.91 -0.02 5.59 16 38 H 0.04 2.03 7.20 -2.38 -0.02 2.01 16 39 H 0.08 3.24 7.50 -2.39 -0.02 3.22 16 40 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 41 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 1.16 7.41 -2.39 -0.02 1.14 16 Total: -1.00 -82.59 362.18 2.44 -80.14 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.61 Total: 26.59 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 7.28 Total: 14.87 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.86 Total: -127.67 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.25 Total: -36.56 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.88 Total: 42.64 kcal Total: -82.59 2.44 -80.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364085449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.573 kcal (2) G-P(sol) polarization free energy of solvation -82.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds