Wall clock time and date at job start Tue Mar 31 2020 12:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34778 * 116.99802 * 2 1 4 4 O 1.21549 * 120.00127 * 359.97438 * 3 2 1 5 5 C 1.47084 * 119.99909 * 179.97438 * 3 2 1 6 6 C 1.38190 * 126.46286 * 0.03397 * 5 3 2 7 7 N 1.34130 * 107.52997 * 179.97438 * 6 5 3 8 8 C 1.46501 * 125.66695 * 180.02562 * 7 6 5 9 9 N 1.39914 * 108.67021 * 359.74901 * 7 6 5 10 10 C 1.30900 * 108.88589 * 0.42481 * 9 7 6 11 11 N 1.39785 * 126.08457 * 179.84680 * 10 9 7 12 12 C 1.34780 * 119.99391 * 359.69200 * 11 10 9 13 13 O 1.21590 * 119.99993 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99966 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47299 * 184.79547 * 15 14 12 17 17 C 1.50704 * 115.54588 * 294.81766 * 16 15 14 18 18 H 1.07995 * 120.00086 * 95.20380 * 17 16 15 19 19 C 1.37877 * 119.99726 * 274.92551 * 17 16 15 20 20 N 1.31515 * 120.00084 * 355.41881 * 19 17 16 21 21 Si 1.86796 * 120.00102 * 175.42113 * 19 17 16 22 22 H 1.48498 * 109.47239 * 90.00025 * 21 19 17 23 23 H 1.48493 * 109.47332 * 210.00070 * 21 19 17 24 24 H 1.48499 * 109.47076 * 330.00113 * 21 19 17 25 25 C 1.53000 * 117.50122 * 80.48247 * 16 15 14 26 26 C 1.52994 * 117.50156 * 149.14359 * 16 15 14 27 27 H 1.09005 * 109.47194 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47168 * 299.99956 * 1 2 3 29 29 H 1.09003 * 109.46670 * 60.00162 * 1 2 3 30 30 H 1.08007 * 126.23512 * 359.93551 * 6 5 3 31 31 H 1.08994 * 109.47468 * 89.99690 * 8 7 6 32 32 H 1.09000 * 109.47357 * 210.00127 * 8 7 6 33 33 H 1.09003 * 109.46797 * 329.99409 * 8 7 6 34 34 H 0.96991 * 120.00134 * 179.69150 * 11 10 9 35 35 H 0.96999 * 119.99492 * 359.97438 * 14 12 11 36 36 H 1.09001 * 109.47302 * 64.79393 * 15 14 12 37 37 H 1.09005 * 109.46853 * 304.79585 * 15 14 12 38 38 H 0.96997 * 120.00397 * 184.99696 * 20 19 17 39 39 H 1.08997 * 117.50142 * 215.00458 * 25 16 15 40 40 H 1.09000 * 117.49511 * 0.02905 * 25 16 15 41 41 H 1.08996 * 117.49909 * 359.97438 * 26 16 15 42 42 H 1.09006 * 117.50020 * 144.97002 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4018 2.2203 -0.0005 5 6 3.5327 1.2779 0.0006 6 6 4.4110 0.2110 0.0005 7 7 5.6552 0.7121 0.0006 8 6 6.8922 -0.0729 0.0000 9 7 5.5755 2.1089 -0.0051 10 6 4.3149 2.4615 0.0006 11 7 3.8263 3.7711 0.0007 12 6 4.6844 4.8104 0.0008 13 8 5.8835 4.6088 0.0012 14 7 4.2133 6.0732 0.0014 15 6 5.1460 7.2029 0.0009 16 6 4.3623 8.5114 0.1223 17 6 3.4602 8.8388 -1.0396 18 1 2.4146 8.5710 -1.0037 19 6 3.9686 9.4855 -2.1461 20 7 5.2178 9.8967 -2.1512 21 14 2.8831 9.7775 -3.6380 22 1 2.1927 11.0849 -3.4996 23 1 3.7198 9.7870 -4.8647 24 1 1.8738 8.6927 -3.7357 25 6 3.8956 8.9284 1.5185 26 6 5.0435 9.6790 0.8389 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.1442 -0.8356 0.0010 31 1 7.1988 -0.2671 -1.0278 32 1 7.6759 0.4836 0.5140 33 1 6.7221 -1.0193 0.5135 34 1 2.8698 3.9319 0.0007 35 1 3.2567 6.2339 0.0014 36 1 5.7141 7.2047 -0.9293 37 1 5.8302 7.1096 0.8443 38 1 5.5548 10.4148 -2.8988 39 1 2.9361 9.4396 1.5966 40 1 4.1472 8.2707 2.3505 41 1 6.0498 9.5149 1.2242 42 1 4.8396 10.6841 0.4696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001367035463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:45 Heat of formation + Delta-G solvation = 1.311776 kcal Electronic energy + Delta-G solvation = -26869.749508 eV Core-core repulsion = 22853.464365 eV Total energy + Delta-G solvation = -4016.285143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65256 -40.00146 -39.38189 -36.81209 -36.45506 -34.79570 -33.34872 -32.30079 -31.90351 -30.76081 -27.99196 -27.09638 -26.05286 -25.06926 -23.11573 -22.05883 -21.10928 -20.65171 -19.75485 -19.26111 -18.12525 -17.49277 -17.30443 -16.53376 -16.50340 -15.99925 -15.75467 -15.53401 -14.91625 -14.58468 -14.29834 -14.00597 -13.85989 -13.56493 -13.45425 -13.15447 -12.98221 -12.84001 -12.61015 -12.22545 -11.90504 -11.54738 -10.97322 -10.95652 -10.94246 -10.92952 -10.72280 -10.55823 -10.48644 -10.19033 -9.67654 -9.43068 -9.07930 -9.00513 -8.50653 -8.42631 -8.19839 -7.98025 -6.03399 -4.12926 1.16549 2.02807 2.09061 2.58734 3.03639 3.11100 3.29180 3.37238 3.39733 3.87214 4.17676 4.38536 4.42407 4.71055 4.88467 4.91876 4.93127 5.01748 5.10764 5.16995 5.23664 5.24718 5.37462 5.40757 5.68031 6.05831 6.23862 6.38578 6.50677 6.59674 6.61192 6.73950 6.77782 6.86785 7.09281 7.16735 7.33142 7.44016 7.56617 7.71557 7.75912 7.85547 8.38069 8.55733 8.88338 9.09074 9.54147 11.03747 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013115 B = 0.003237 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.373887 B = 8648.119770 C = 9559.027036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.547 3.453 4 O -0.520 6.520 5 C -0.310 4.310 6 C 0.143 3.857 7 N -0.355 5.355 8 C 0.098 3.902 9 N -0.277 5.277 10 C 0.385 3.615 11 N -0.648 5.648 12 C 0.690 3.310 13 O -0.558 6.558 14 N -0.712 5.712 15 C 0.182 3.818 16 C 0.024 3.976 17 C -0.500 4.500 18 H 0.060 0.940 19 C 0.073 3.927 20 N -0.875 5.875 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.211 4.211 26 C -0.140 4.140 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.193 0.807 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.424 0.576 35 H 0.400 0.600 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.261 0.739 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.985 -23.667 5.096 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.277 6.277 3 C 0.394 3.606 4 O -0.409 6.409 5 C -0.326 4.326 6 C -0.013 4.013 7 N -0.131 5.131 8 C -0.042 4.042 9 N -0.107 5.107 10 C 0.125 3.875 11 N -0.303 5.303 12 C 0.389 3.611 13 O -0.432 6.432 14 N -0.365 5.365 15 C 0.059 3.941 16 C 0.023 3.977 17 C -0.537 4.537 18 H 0.078 0.922 19 C -0.131 4.131 20 N -0.511 5.511 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.248 4.248 26 C -0.179 4.179 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.210 0.790 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.264 0.736 35 H 0.234 0.766 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.576 -23.012 4.938 23.589 hybrid contribution -2.468 0.157 -0.923 2.640 sum -4.044 -22.855 4.015 23.555 Atomic orbital electron populations 1.23241 0.76092 1.03432 1.02787 1.86511 1.23432 1.32744 1.84995 1.19883 0.87223 0.81362 0.72180 1.90802 1.66372 1.35868 1.47870 1.18911 0.90269 0.92010 1.31420 1.23123 0.84043 0.99597 0.94524 1.48392 1.05945 1.05351 1.53435 1.22021 0.83686 0.94404 1.04123 1.78244 1.15024 0.87000 1.30385 1.18783 0.89808 0.84491 0.94455 1.42365 1.11134 1.00653 1.76163 1.16105 0.85200 0.80852 0.78934 1.90978 1.12770 1.83706 1.55767 1.45158 1.11305 1.03162 1.76842 1.20937 0.89807 0.83037 1.00338 1.19042 0.97973 0.90694 0.90022 1.20357 0.94525 1.39639 0.99197 0.92165 1.24982 0.94790 0.95160 0.98126 1.69988 1.14102 1.35388 1.31584 0.86625 0.80440 0.78542 0.82620 1.20718 1.21217 1.19764 1.23020 0.99024 1.05635 0.97106 1.22463 0.93859 0.98337 1.03202 0.88241 0.91823 0.91801 0.79014 0.89986 0.88462 0.88949 0.73572 0.76609 0.91445 0.94112 0.92906 0.90373 0.91681 0.91785 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.36 -3.64 10.39 -40.70 -0.42 -4.07 16 3 C 0.55 7.15 7.95 34.32 0.27 7.42 16 4 O -0.52 -7.98 14.99 -19.30 -0.29 -8.27 16 5 C -0.31 -4.14 6.14 -104.94 -0.64 -4.79 16 6 C 0.14 1.36 11.32 -16.57 -0.19 1.18 16 7 N -0.35 -4.02 3.97 -67.59 -0.27 -4.29 16 8 C 0.10 0.60 11.43 59.85 0.68 1.29 16 9 N -0.28 -4.79 10.72 31.62 0.34 -4.45 16 10 C 0.39 6.55 7.79 -154.45 -1.20 5.35 16 11 N -0.65 -11.64 5.42 -15.30 -0.08 -11.72 16 12 C 0.69 14.55 8.53 -86.91 -0.74 13.81 16 13 O -0.56 -13.60 15.06 5.29 0.08 -13.52 16 14 N -0.71 -14.84 5.48 -65.22 -0.36 -15.20 16 15 C 0.18 4.28 5.50 -4.04 -0.02 4.26 16 16 C 0.02 0.57 1.47 -155.66 -0.23 0.34 16 17 C -0.50 -13.11 8.59 -34.44 -0.30 -13.41 16 18 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 19 C 0.07 1.98 5.43 -17.82 -0.10 1.89 16 20 N -0.87 -24.61 12.65 55.43 0.70 -23.90 16 21 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.21 -4.51 9.96 -26.69 -0.27 -4.77 16 26 C -0.14 -3.28 9.14 -26.70 -0.24 -3.52 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.19 0.88 8.06 -52.48 -0.42 0.46 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.42 6.93 6.97 -40.82 -0.28 6.65 16 35 H 0.40 7.68 8.34 -40.82 -0.34 7.34 16 36 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.04 0.95 8.09 -51.93 -0.42 0.53 16 38 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 39 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -35.53 370.51 -7.31 -42.84 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.66 Total: 10.60 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -1.91 Total: 10.39 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.33 Total: -59.56 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.63 Total: -25.85 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.53 -7.31 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001367035463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.149 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds