Wall clock time and date at job start Tue Mar 31 2020 12:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34778 * 116.99802 * 2 1 4 4 O 1.21549 * 120.00127 * 359.97438 * 3 2 1 5 5 C 1.47084 * 119.99909 * 179.97438 * 3 2 1 6 6 C 1.38190 * 126.46286 * 0.03397 * 5 3 2 7 7 N 1.34130 * 107.52997 * 179.97438 * 6 5 3 8 8 C 1.46501 * 125.66695 * 180.02562 * 7 6 5 9 9 N 1.39914 * 108.67021 * 359.74901 * 7 6 5 10 10 C 1.30900 * 108.88589 * 0.42481 * 9 7 6 11 11 N 1.39785 * 126.08457 * 179.84680 * 10 9 7 12 12 C 1.34780 * 119.99391 * 359.69200 * 11 10 9 13 13 O 1.21590 * 119.99993 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99966 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47299 * 184.79547 * 15 14 12 17 17 C 1.50704 * 115.54588 * 294.81766 * 16 15 14 18 18 H 1.07995 * 120.00086 * 95.20380 * 17 16 15 19 19 C 1.37877 * 119.99726 * 274.92551 * 17 16 15 20 20 N 1.31515 * 120.00084 * 355.41881 * 19 17 16 21 21 Si 1.86796 * 120.00102 * 175.42113 * 19 17 16 22 22 H 1.48498 * 109.47239 * 90.00025 * 21 19 17 23 23 H 1.48493 * 109.47332 * 210.00070 * 21 19 17 24 24 H 1.48499 * 109.47076 * 330.00113 * 21 19 17 25 25 C 1.53000 * 117.50122 * 80.48247 * 16 15 14 26 26 C 1.52994 * 117.50156 * 149.14359 * 16 15 14 27 27 H 1.09005 * 109.47194 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47168 * 299.99956 * 1 2 3 29 29 H 1.09003 * 109.46670 * 60.00162 * 1 2 3 30 30 H 1.08007 * 126.23512 * 359.93551 * 6 5 3 31 31 H 1.08994 * 109.47468 * 89.99690 * 8 7 6 32 32 H 1.09000 * 109.47357 * 210.00127 * 8 7 6 33 33 H 1.09003 * 109.46797 * 329.99409 * 8 7 6 34 34 H 0.96991 * 120.00134 * 179.69150 * 11 10 9 35 35 H 0.96999 * 119.99492 * 359.97438 * 14 12 11 36 36 H 1.09001 * 109.47302 * 64.79393 * 15 14 12 37 37 H 1.09005 * 109.46853 * 304.79585 * 15 14 12 38 38 H 0.96997 * 120.00397 * 184.99696 * 20 19 17 39 39 H 1.08997 * 117.50142 * 215.00458 * 25 16 15 40 40 H 1.09000 * 117.49511 * 0.02905 * 25 16 15 41 41 H 1.08996 * 117.49909 * 359.97438 * 26 16 15 42 42 H 1.09006 * 117.50020 * 144.97002 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4018 2.2203 -0.0005 5 6 3.5327 1.2779 0.0006 6 6 4.4110 0.2110 0.0005 7 7 5.6552 0.7121 0.0006 8 6 6.8922 -0.0729 0.0000 9 7 5.5755 2.1089 -0.0051 10 6 4.3149 2.4615 0.0006 11 7 3.8263 3.7711 0.0007 12 6 4.6844 4.8104 0.0008 13 8 5.8835 4.6088 0.0012 14 7 4.2133 6.0732 0.0014 15 6 5.1460 7.2029 0.0009 16 6 4.3623 8.5114 0.1223 17 6 3.4602 8.8388 -1.0396 18 1 2.4146 8.5710 -1.0037 19 6 3.9686 9.4855 -2.1461 20 7 5.2178 9.8967 -2.1512 21 14 2.8831 9.7775 -3.6380 22 1 2.1927 11.0849 -3.4996 23 1 3.7198 9.7870 -4.8647 24 1 1.8738 8.6927 -3.7357 25 6 3.8956 8.9284 1.5185 26 6 5.0435 9.6790 0.8389 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.1442 -0.8356 0.0010 31 1 7.1988 -0.2671 -1.0278 32 1 7.6759 0.4836 0.5140 33 1 6.7221 -1.0193 0.5135 34 1 2.8698 3.9319 0.0007 35 1 3.2567 6.2339 0.0014 36 1 5.7141 7.2047 -0.9293 37 1 5.8302 7.1096 0.8443 38 1 5.5548 10.4148 -2.8988 39 1 2.9361 9.4396 1.5966 40 1 4.1472 8.2707 2.3505 41 1 6.0498 9.5149 1.2242 42 1 4.8396 10.6841 0.4696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001367035463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:45 Heat of formation + Delta-G solvation = -23.318048 kcal Electronic energy + Delta-G solvation = -26870.817537 eV Core-core repulsion = 22853.464365 eV Total energy + Delta-G solvation = -4017.353172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.68144 -41.03432 -40.83789 -38.61368 -37.40504 -36.11137 -35.08949 -33.96815 -33.29446 -31.77756 -28.71845 -28.38591 -27.54910 -26.81366 -24.08293 -23.30871 -22.86716 -21.71173 -21.40575 -20.90717 -19.31700 -18.84199 -18.32578 -17.95443 -17.43571 -17.40418 -16.87131 -16.61575 -16.51388 -16.19637 -15.86958 -15.68462 -15.15462 -14.66754 -14.49318 -14.30861 -14.16244 -13.98461 -13.55510 -13.47311 -13.43581 -12.94698 -12.87111 -12.82260 -12.38251 -12.06187 -12.01168 -11.92887 -11.71107 -11.69537 -11.39869 -11.18124 -10.96264 -10.44835 -10.22050 -10.06808 -9.91684 -9.42080 -8.09423 -6.23437 0.33855 0.92215 1.06400 1.40886 1.44203 1.52179 1.61172 1.92971 2.02471 2.36414 2.42052 3.08039 3.18501 3.36494 3.56779 3.86821 4.14477 4.22062 4.29953 4.42430 4.44149 4.46981 4.49282 4.54110 4.57142 4.65599 4.71621 4.77961 4.82840 4.95074 5.01899 5.28570 5.35332 5.45709 5.52009 5.59268 5.68927 5.76885 5.78534 5.91254 6.36570 6.49620 6.80759 6.83500 7.03079 7.44821 7.46989 8.97552 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013115 B = 0.003237 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.373887 B = 8648.119770 C = 9559.027036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.350 6.350 3 C 0.550 3.450 4 O -0.553 6.553 5 C -0.334 4.334 6 C 0.180 3.820 7 N -0.350 5.350 8 C 0.087 3.913 9 N -0.333 5.333 10 C 0.354 3.646 11 N -0.642 5.642 12 C 0.692 3.308 13 O -0.595 6.595 14 N -0.707 5.707 15 C 0.200 3.800 16 C 0.001 3.999 17 C -0.506 4.506 18 H 0.062 0.938 19 C 0.025 3.975 20 N -0.906 5.906 21 Si 0.949 3.051 22 H -0.274 1.274 23 H -0.291 1.291 24 H -0.268 1.268 25 C -0.178 4.178 26 C -0.148 4.148 27 H 0.138 0.862 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.252 0.748 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.430 0.570 35 H 0.408 0.592 36 H 0.027 0.973 37 H 0.040 0.960 38 H 0.259 0.741 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -26.886 5.547 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.266 6.266 3 C 0.398 3.602 4 O -0.445 6.445 5 C -0.349 4.349 6 C 0.024 3.976 7 N -0.127 5.127 8 C -0.052 4.052 9 N -0.163 5.163 10 C 0.095 3.905 11 N -0.297 5.297 12 C 0.391 3.609 13 O -0.472 6.472 14 N -0.360 5.360 15 C 0.076 3.924 16 C 0.001 3.999 17 C -0.543 4.543 18 H 0.080 0.920 19 C -0.175 4.175 20 N -0.543 5.543 21 Si 0.775 3.225 22 H -0.200 1.200 23 H -0.217 1.217 24 H -0.192 1.192 25 C -0.215 4.215 26 C -0.186 4.186 27 H 0.156 0.844 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.268 0.732 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.160 0.840 34 H 0.271 0.729 35 H 0.244 0.756 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.967 -26.286 5.399 26.998 hybrid contribution -2.019 0.961 -1.034 2.463 sum -4.986 -25.325 4.365 26.177 Atomic orbital electron populations 1.23556 0.74446 1.05809 1.02398 1.86493 1.24905 1.30822 1.84331 1.19900 0.87176 0.81728 0.71444 1.90779 1.67036 1.37119 1.49600 1.19064 0.90972 0.91649 1.33198 1.23925 0.82246 1.01030 0.90424 1.48739 1.08168 1.03535 1.52231 1.22509 0.81689 0.95309 1.05654 1.78059 1.15881 0.91042 1.31289 1.19108 0.90871 0.84563 0.95972 1.42105 1.10849 1.00900 1.75805 1.16178 0.85038 0.81267 0.78428 1.90940 1.14475 1.84363 1.57404 1.44951 1.11273 1.02790 1.77030 1.20517 0.89869 0.83882 0.98175 1.19051 0.98742 0.90957 0.91186 1.20660 0.94874 1.38866 0.99928 0.91970 1.25686 0.95891 0.95357 1.00612 1.70106 1.15584 1.36406 1.32233 0.85696 0.78846 0.78681 0.79293 1.19965 1.21741 1.19202 1.23003 0.98398 1.04215 0.95910 1.22386 0.95081 0.97178 1.03991 0.84432 0.92149 0.92375 0.73178 0.88597 0.89725 0.84000 0.72878 0.75639 0.95429 0.94160 0.93178 0.89583 0.89514 0.91104 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.35 -6.11 10.39 -56.89 -0.59 -6.70 16 3 C 0.55 13.63 7.95 70.14 0.56 14.19 16 4 O -0.55 -16.90 14.99 19.68 0.29 -16.61 16 5 C -0.33 -8.43 6.14 -20.07 -0.12 -8.55 16 6 C 0.18 2.81 11.32 84.33 0.95 3.76 16 7 N -0.35 -7.17 3.97 -367.75 -1.46 -8.63 16 8 C 0.09 0.80 11.43 127.77 1.46 2.27 16 9 N -0.33 -11.57 10.72 -53.88 -0.58 -12.15 16 10 C 0.35 12.15 7.79 133.92 1.04 13.19 16 11 N -0.64 -23.72 5.42 -320.57 -1.74 -25.46 16 12 C 0.69 30.20 8.53 179.05 1.53 31.73 16 13 O -0.60 -30.20 15.06 -4.00 -0.06 -30.26 16 14 N -0.71 -30.24 5.48 -478.52 -2.62 -32.86 16 15 C 0.20 9.69 5.50 86.38 0.48 10.16 16 16 C 0.00 0.07 1.47 -52.93 -0.08 -0.01 16 17 C -0.51 -26.72 8.59 25.60 0.22 -26.50 16 18 H 0.06 3.19 7.82 -2.91 -0.02 3.17 16 19 C 0.03 1.38 5.43 84.65 0.46 1.84 16 20 N -0.91 -52.26 12.65 21.45 0.27 -51.99 16 21 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 C -0.18 -7.42 9.96 30.62 0.30 -7.12 16 26 C -0.15 -6.97 9.14 30.62 0.28 -6.69 16 27 H 0.14 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.25 0.71 8.06 -2.91 -0.02 0.69 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.43 14.49 6.97 -92.71 -0.65 13.84 16 35 H 0.41 15.90 8.34 -92.71 -0.77 15.13 16 36 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.93 8.09 -2.38 -0.02 1.91 16 38 H 0.26 14.40 8.32 -92.71 -0.77 13.63 16 39 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.09 3.25 8.14 -2.39 -0.02 3.24 16 41 H 0.07 3.18 8.14 -2.39 -0.02 3.17 16 42 H 0.07 3.42 8.14 -2.38 -0.02 3.40 16 Total: -1.00 -81.32 370.51 3.47 -77.85 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -0.35 Total: 31.31 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: 8.28 Total: 29.85 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -6.13 Total: -131.08 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -0.36 Total: -53.57 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -81.32 3.47 -77.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001367035463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.528 kcal (2) G-P(sol) polarization free energy of solvation -81.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds