Wall clock time and date at job start Tue Mar 31 2020 13:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86799 * 119.99714 * 2 1 4 4 H 1.48499 * 109.47437 * 239.99661 * 3 2 1 5 5 H 1.48499 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.46713 * 119.99945 * 3 2 1 7 7 C 1.40267 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00182 * 188.98117 * 7 2 1 9 9 C 1.40892 * 120.00264 * 8.98004 * 7 2 1 10 10 C 1.40712 * 120.32296 * 35.82366 * 9 7 2 11 11 C 1.37603 * 119.87865 * 180.25433 * 10 9 7 12 12 C 1.38833 * 120.56912 * 359.74086 * 11 10 9 13 13 C 1.38218 * 120.67381 * 0.02562 * 12 11 10 14 14 C 1.39223 * 120.09826 * 359.97438 * 13 12 11 15 15 C 1.47433 * 120.28568 * 180.02562 * 14 13 12 16 16 O 1.21606 * 119.99683 * 175.34626 * 15 14 13 17 17 N 1.34777 * 119.99781 * 355.34740 * 15 14 13 18 18 N 1.40097 * 119.99589 * 180.02562 * 17 15 14 19 19 C 1.46933 * 120.53852 * 254.97529 * 18 17 15 20 20 C 1.53433 * 107.78958 * 224.77549 * 19 18 17 21 21 C 1.52850 * 108.86532 * 296.83568 * 20 19 18 22 22 C 1.50596 * 110.49105 * 51.32393 * 21 20 19 23 23 C 1.38502 * 118.93302 * 159.47585 * 22 21 20 24 24 C 1.38123 * 120.30391 * 179.59180 * 23 22 21 25 25 C 1.38308 * 120.16480 * 0.26804 * 24 23 22 26 26 C 1.38027 * 119.90540 * 359.53970 * 25 24 23 27 27 C 1.38603 * 121.50072 * 339.22546 * 22 21 20 28 28 H 0.96994 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.06631 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.71710 * 179.76673 * 11 10 9 31 31 H 1.07998 * 119.66168 * 180.02562 * 12 11 10 32 32 H 1.08003 * 119.94866 * 180.02562 * 13 12 11 33 33 H 0.96990 * 120.00097 * 359.97438 * 17 15 14 34 34 H 1.08995 * 109.79390 * 344.34466 * 19 18 17 35 35 H 1.08995 * 109.79412 * 105.14435 * 19 18 17 36 36 H 1.08998 * 109.57899 * 56.65395 * 20 19 18 37 37 H 1.09008 * 109.56604 * 176.90181 * 20 19 18 38 38 H 1.08999 * 109.27023 * 291.05878 * 21 20 19 39 39 H 1.08997 * 109.26912 * 171.58220 * 21 20 19 40 40 H 1.08003 * 119.84549 * 359.56975 * 23 22 21 41 41 H 1.08001 * 119.91597 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.04530 * 179.77857 * 25 24 23 43 43 H 1.08009 * 119.98217 * 180.27973 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6965 -1.2124 5 1 1.2752 2.7464 0.0006 6 1 3.0940 1.6964 1.2126 7 6 2.0077 -1.2147 0.0005 8 1 3.0778 -1.2204 0.1466 9 6 1.3162 -2.4276 -0.1894 10 6 0.2160 -2.4886 -1.0644 11 6 -0.4559 -3.6766 -1.2391 12 6 -0.0548 -4.8207 -0.5626 13 6 1.0257 -4.7882 0.2988 14 6 1.7257 -3.6011 0.4963 15 6 2.8791 -3.5619 1.4137 16 8 3.5385 -2.5454 1.5183 17 7 3.2028 -4.6525 2.1363 18 7 4.2985 -4.6151 3.0085 19 6 5.5565 -5.2876 2.6561 20 6 6.0431 -6.0507 3.8951 21 6 6.3418 -5.0468 5.0082 22 6 5.1694 -4.1245 5.2148 23 6 5.0533 -3.4473 6.4174 24 6 3.9939 -2.5879 6.6340 25 6 3.0379 -2.4020 5.6519 26 6 3.1481 -3.0699 4.4490 27 6 4.2129 -3.9371 4.2294 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1034 -1.6036 -1.5946 30 1 -1.3023 -3.7196 -1.9084 31 1 -0.5925 -5.7455 -0.7109 32 1 1.3279 -5.6853 0.8188 33 1 2.6766 -5.4631 2.0531 34 1 5.3850 -5.9853 1.8365 35 1 6.3006 -4.5477 2.3614 36 1 5.2683 -6.7426 4.2255 37 1 6.9482 -6.6064 3.6494 38 1 7.2186 -4.4590 4.7368 39 1 6.5431 -5.5856 5.9341 40 1 5.7944 -3.5922 7.1896 41 1 3.9093 -2.0634 7.5743 42 1 2.2084 -1.7323 5.8247 43 1 2.4046 -2.9222 3.6796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412875410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:01 Heat of formation + Delta-G solvation = 50.627408 kcal Electronic energy + Delta-G solvation = -26959.026274 eV Core-core repulsion = 23355.728881 eV Total energy + Delta-G solvation = -3603.297394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.07937 -38.65434 -36.94271 -36.06904 -34.29125 -33.67548 -31.46643 -30.22814 -29.96428 -29.60244 -28.55245 -25.56875 -24.56180 -23.01237 -22.67550 -21.68238 -20.89518 -19.92592 -19.09933 -17.87778 -17.13454 -16.58518 -16.03991 -15.62039 -15.27020 -14.79081 -14.34674 -14.23059 -14.08148 -13.66137 -13.50773 -13.36725 -13.14897 -12.97963 -12.75151 -12.64852 -12.34516 -12.17678 -11.66520 -11.38091 -11.15108 -11.13915 -11.11146 -10.75906 -10.69661 -10.57662 -10.54068 -10.18457 -9.88210 -9.67676 -9.30039 -8.76326 -8.51452 -8.37327 -7.68439 -7.41793 -7.01443 -6.85620 -4.46314 1.72389 1.91029 2.26580 2.41580 2.77121 3.07455 3.13594 3.22264 3.94995 4.06293 4.14141 4.55762 4.63150 4.87193 4.88676 4.96005 5.20533 5.38597 5.43036 5.51929 5.54342 5.65032 5.71079 5.77998 5.88333 5.89999 6.00404 6.01117 6.14422 6.17341 6.21828 6.39918 6.50085 6.67146 6.80759 6.86881 6.96244 7.04038 7.13915 7.17982 7.37414 7.52835 7.64071 7.78096 7.88636 8.06229 8.12912 8.22774 8.62091 8.75639 8.83218 9.42047 10.10084 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.004660 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.140640 B = 6007.058312 C = 7270.284593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.071 3.929 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.420 4.420 8 H 0.110 0.890 9 C 0.150 3.850 10 C -0.144 4.144 11 C -0.095 4.095 12 C -0.242 4.242 13 C -0.057 4.057 14 C -0.258 4.258 15 C 0.561 3.439 16 O -0.517 6.517 17 N -0.536 5.536 18 N -0.431 5.431 19 C 0.137 3.863 20 C -0.134 4.134 21 C -0.068 4.068 22 C -0.156 4.156 23 C -0.086 4.086 24 C -0.174 4.174 25 C -0.084 4.084 26 C -0.158 4.158 27 C 0.229 3.771 28 H 0.284 0.716 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.402 0.598 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.248 -8.660 7.650 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.448 4.448 8 H 0.127 0.873 9 C 0.145 3.855 10 C -0.163 4.163 11 C -0.114 4.114 12 C -0.261 4.261 13 C -0.076 4.076 14 C -0.265 4.265 15 C 0.355 3.645 16 O -0.392 6.392 17 N -0.286 5.286 18 N -0.233 5.233 19 C 0.014 3.986 20 C -0.173 4.173 21 C -0.105 4.105 22 C -0.162 4.162 23 C -0.105 4.105 24 C -0.194 4.194 25 C -0.103 4.103 26 C -0.180 4.180 27 C 0.129 3.871 28 H 0.094 0.906 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.244 0.756 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.523 -7.835 7.539 13.222 hybrid contribution -0.209 0.388 -0.042 0.443 sum 7.314 -7.447 7.497 12.851 Atomic orbital electron populations 1.69700 1.07758 1.29844 1.34258 1.26130 0.94780 1.01802 0.92079 0.86229 0.80036 0.79372 0.80430 1.18699 1.20382 1.18543 1.20274 0.97651 0.89392 1.37515 0.87270 1.17434 0.89874 0.91138 0.87040 1.21342 0.98500 0.96317 1.00133 1.20815 0.98209 0.93610 0.98742 1.20289 1.02004 0.97607 1.06239 1.20645 0.95057 0.95045 0.96846 1.19265 1.02711 0.96815 1.07695 1.18900 0.84674 0.81908 0.79044 1.90700 1.52417 1.30213 1.65872 1.45306 1.25561 1.16721 1.40972 1.45430 1.06249 1.58737 1.12880 1.21758 0.84142 0.95601 0.97130 1.21902 1.01704 0.97986 0.95682 1.20263 0.95830 0.95692 0.98759 1.19168 0.98988 1.03917 0.94101 1.20693 0.97707 0.96357 0.95695 1.20794 0.96583 1.02331 0.99729 1.20910 0.98410 0.98110 0.92884 1.20923 1.00107 0.98389 0.98534 1.17602 0.94534 0.91216 0.83791 0.90559 0.86566 0.88957 0.88958 0.89291 0.75629 0.90104 0.91961 0.91127 0.90216 0.91187 0.90919 0.86585 0.86830 0.86420 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.22 11.25 55.56 0.63 -19.59 16 2 C 0.07 1.81 5.25 -17.30 -0.09 1.72 16 3 Si 0.92 19.71 29.57 -169.99 -5.03 14.68 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.42 -11.39 7.78 -37.82 -0.29 -11.68 16 8 H 0.11 3.10 5.73 -52.49 -0.30 2.80 16 9 C 0.15 3.91 5.48 -106.54 -0.58 3.33 16 10 C -0.14 -3.56 8.62 -38.88 -0.34 -3.89 16 11 C -0.09 -2.08 10.01 -39.59 -0.40 -2.47 16 12 C -0.24 -4.97 10.03 -39.37 -0.39 -5.36 16 13 C -0.06 -1.17 9.52 -39.22 -0.37 -1.55 16 14 C -0.26 -6.13 5.92 -104.37 -0.62 -6.74 16 15 C 0.56 12.80 6.19 -12.52 -0.08 12.72 16 16 O -0.52 -13.58 12.88 5.27 0.07 -13.51 16 17 N -0.54 -9.87 5.47 30.43 0.17 -9.71 16 18 N -0.43 -7.38 3.22 -58.08 -0.19 -7.57 16 19 C 0.14 1.83 6.78 -3.58 -0.02 1.80 16 20 C -0.13 -1.38 6.11 -26.58 -0.16 -1.54 16 21 C -0.07 -0.76 5.78 -28.01 -0.16 -0.92 16 22 C -0.16 -2.32 5.76 -104.44 -0.60 -2.92 16 23 C -0.09 -1.18 9.66 -39.53 -0.38 -1.56 16 24 C -0.17 -2.53 10.04 -39.60 -0.40 -2.93 16 25 C -0.08 -1.42 10.05 -39.63 -0.40 -1.82 16 26 C -0.16 -3.06 8.80 -39.35 -0.35 -3.41 16 27 C 0.23 4.08 6.29 -83.72 -0.53 3.55 16 28 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 29 H 0.12 2.94 6.72 -52.49 -0.35 2.59 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.09 1.49 6.42 -52.48 -0.34 1.16 16 33 H 0.40 6.35 6.88 -182.61 -1.26 5.10 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 41 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.13 2.80 5.91 -52.48 -0.31 2.49 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -30.18 350.85 -11.57 -41.75 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -6.34 Total: 12.33 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -6.16 Total: -23.68 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.60 Total: -36.86 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.51 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.18 -11.57 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412875410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.376 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds