Wall clock time and date at job start Tue Mar 31 2020 13:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86799 * 119.99714 * 2 1 4 4 H 1.48499 * 109.47437 * 239.99661 * 3 2 1 5 5 H 1.48499 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.46713 * 119.99945 * 3 2 1 7 7 C 1.40267 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00182 * 188.98117 * 7 2 1 9 9 C 1.40892 * 120.00264 * 8.98004 * 7 2 1 10 10 C 1.40712 * 120.32296 * 35.82366 * 9 7 2 11 11 C 1.37603 * 119.87865 * 180.25433 * 10 9 7 12 12 C 1.38833 * 120.56912 * 359.74086 * 11 10 9 13 13 C 1.38218 * 120.67381 * 0.02562 * 12 11 10 14 14 C 1.39223 * 120.09826 * 359.97438 * 13 12 11 15 15 C 1.47433 * 120.28568 * 180.02562 * 14 13 12 16 16 O 1.21606 * 119.99683 * 175.34626 * 15 14 13 17 17 N 1.34777 * 119.99781 * 355.34740 * 15 14 13 18 18 N 1.40097 * 119.99589 * 180.02562 * 17 15 14 19 19 C 1.46933 * 120.53852 * 254.97529 * 18 17 15 20 20 C 1.53433 * 107.78958 * 224.77549 * 19 18 17 21 21 C 1.52850 * 108.86532 * 296.83568 * 20 19 18 22 22 C 1.50596 * 110.49105 * 51.32393 * 21 20 19 23 23 C 1.38502 * 118.93302 * 159.47585 * 22 21 20 24 24 C 1.38123 * 120.30391 * 179.59180 * 23 22 21 25 25 C 1.38308 * 120.16480 * 0.26804 * 24 23 22 26 26 C 1.38027 * 119.90540 * 359.53970 * 25 24 23 27 27 C 1.38603 * 121.50072 * 339.22546 * 22 21 20 28 28 H 0.96994 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.06631 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.71710 * 179.76673 * 11 10 9 31 31 H 1.07998 * 119.66168 * 180.02562 * 12 11 10 32 32 H 1.08003 * 119.94866 * 180.02562 * 13 12 11 33 33 H 0.96990 * 120.00097 * 359.97438 * 17 15 14 34 34 H 1.08995 * 109.79390 * 344.34466 * 19 18 17 35 35 H 1.08995 * 109.79412 * 105.14435 * 19 18 17 36 36 H 1.08998 * 109.57899 * 56.65395 * 20 19 18 37 37 H 1.09008 * 109.56604 * 176.90181 * 20 19 18 38 38 H 1.08999 * 109.27023 * 291.05878 * 21 20 19 39 39 H 1.08997 * 109.26912 * 171.58220 * 21 20 19 40 40 H 1.08003 * 119.84549 * 359.56975 * 23 22 21 41 41 H 1.08001 * 119.91597 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.04530 * 179.77857 * 25 24 23 43 43 H 1.08009 * 119.98217 * 180.27973 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6965 -1.2124 5 1 1.2752 2.7464 0.0006 6 1 3.0940 1.6964 1.2126 7 6 2.0077 -1.2147 0.0005 8 1 3.0778 -1.2204 0.1466 9 6 1.3162 -2.4276 -0.1894 10 6 0.2160 -2.4886 -1.0644 11 6 -0.4559 -3.6766 -1.2391 12 6 -0.0548 -4.8207 -0.5626 13 6 1.0257 -4.7882 0.2988 14 6 1.7257 -3.6011 0.4963 15 6 2.8791 -3.5619 1.4137 16 8 3.5385 -2.5454 1.5183 17 7 3.2028 -4.6525 2.1363 18 7 4.2985 -4.6151 3.0085 19 6 5.5565 -5.2876 2.6561 20 6 6.0431 -6.0507 3.8951 21 6 6.3418 -5.0468 5.0082 22 6 5.1694 -4.1245 5.2148 23 6 5.0533 -3.4473 6.4174 24 6 3.9939 -2.5879 6.6340 25 6 3.0379 -2.4020 5.6519 26 6 3.1481 -3.0699 4.4490 27 6 4.2129 -3.9371 4.2294 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1034 -1.6036 -1.5946 30 1 -1.3023 -3.7196 -1.9084 31 1 -0.5925 -5.7455 -0.7109 32 1 1.3279 -5.6853 0.8188 33 1 2.6766 -5.4631 2.0531 34 1 5.3850 -5.9853 1.8365 35 1 6.3006 -4.5477 2.3614 36 1 5.2683 -6.7426 4.2255 37 1 6.9482 -6.6064 3.6494 38 1 7.2186 -4.4590 4.7368 39 1 6.5431 -5.5856 5.9341 40 1 5.7944 -3.5922 7.1896 41 1 3.9093 -2.0634 7.5743 42 1 2.2084 -1.7323 5.8247 43 1 2.4046 -2.9222 3.6796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412875410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:00 Heat of formation + Delta-G solvation = 34.740947 kcal Electronic energy + Delta-G solvation = -26959.715163 eV Core-core repulsion = 23355.728881 eV Total energy + Delta-G solvation = -3603.986282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42355 -40.25873 -38.61923 -37.38676 -35.81585 -35.33817 -32.95202 -31.77000 -31.34982 -31.20166 -29.87075 -27.38320 -25.80077 -24.31773 -24.03574 -23.17264 -22.56725 -21.50139 -20.32626 -19.57474 -18.68578 -18.17871 -17.40289 -17.13267 -16.75745 -16.06514 -15.99603 -15.70093 -15.62964 -15.07104 -14.87500 -14.76827 -14.53960 -14.32123 -14.24871 -14.06357 -13.82186 -13.52130 -13.24835 -12.93770 -12.90037 -12.52251 -12.43682 -12.36643 -12.09292 -11.99344 -11.73187 -11.64941 -11.55093 -11.19407 -11.02678 -10.33813 -10.30370 -9.59950 -9.47560 -9.26633 -8.72987 -8.29854 -6.42387 0.45056 0.49175 0.67511 0.97664 1.07648 1.28039 1.39103 1.45642 2.16216 2.27586 2.74651 2.91623 3.24135 3.66316 3.84958 3.90955 4.03896 4.10397 4.22763 4.27821 4.33620 4.42583 4.51808 4.55610 4.63829 4.68378 4.81476 4.82733 4.85427 5.04036 5.05742 5.07604 5.20302 5.22475 5.28638 5.33176 5.42484 5.55958 5.63266 5.71794 5.76314 5.95416 6.01544 6.06102 6.27867 6.36571 6.54768 6.63113 6.72661 6.84963 6.94689 7.75134 8.25019 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.004660 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.140640 B = 6007.058312 C = 7270.284593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.035 3.965 3 Si 0.973 3.027 4 H -0.256 1.256 5 H -0.256 1.256 6 H -0.278 1.278 7 C -0.462 4.462 8 H 0.082 0.918 9 C 0.120 3.880 10 C -0.173 4.173 11 C -0.090 4.090 12 C -0.231 4.231 13 C -0.054 4.054 14 C -0.275 4.275 15 C 0.561 3.439 16 O -0.561 6.561 17 N -0.522 5.522 18 N -0.438 5.438 19 C 0.127 3.873 20 C -0.121 4.121 21 C -0.069 4.069 22 C -0.154 4.154 23 C -0.080 4.080 24 C -0.171 4.171 25 C -0.103 4.103 26 C -0.197 4.197 27 C 0.203 3.797 28 H 0.290 0.710 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.417 0.583 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.159 0.841 41 H 0.144 0.856 42 H 0.117 0.883 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.654 -11.561 9.435 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.180 1.180 6 H -0.204 1.204 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.116 3.884 10 C -0.192 4.192 11 C -0.108 4.108 12 C -0.250 4.250 13 C -0.073 4.073 14 C -0.282 4.282 15 C 0.354 3.646 16 O -0.439 6.439 17 N -0.270 5.270 18 N -0.242 5.242 19 C 0.006 3.994 20 C -0.160 4.160 21 C -0.106 4.106 22 C -0.159 4.159 23 C -0.098 4.098 24 C -0.190 4.190 25 C -0.122 4.122 26 C -0.219 4.219 27 C 0.103 3.897 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.140 0.860 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.261 0.739 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.097 0.903 39 H 0.123 0.877 40 H 0.176 0.824 41 H 0.162 0.838 42 H 0.135 0.865 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.916 -10.794 9.325 16.821 hybrid contribution -0.643 1.067 -0.508 1.346 sum 8.272 -9.727 8.816 15.517 Atomic orbital electron populations 1.69719 1.08463 1.30732 1.35712 1.26730 0.95577 1.04108 0.91584 0.85401 0.79022 0.76554 0.79588 1.18057 1.17957 1.20387 1.20173 0.96708 0.91191 1.40978 0.89967 1.17799 0.90853 0.91940 0.87764 1.21279 0.99582 0.97255 1.01127 1.21209 0.98210 0.92883 0.98524 1.20819 1.01292 0.98593 1.04288 1.21066 0.94376 0.95255 0.96583 1.19646 1.03368 0.97482 1.07661 1.18886 0.84187 0.82340 0.79155 1.90670 1.53830 1.32128 1.67302 1.44858 1.26398 1.15768 1.40023 1.45830 1.06760 1.59339 1.12258 1.22067 0.82152 0.95553 0.99640 1.21889 1.03141 0.97440 0.93505 1.20413 0.94131 0.95471 1.00596 1.19713 0.98915 1.03944 0.93370 1.21227 0.97776 0.94725 0.96109 1.21159 0.95756 1.02160 0.99946 1.21063 0.99687 0.98371 0.93049 1.20780 1.00949 1.01367 0.98802 1.17915 0.95177 0.91667 0.84972 0.89940 0.88274 0.85956 0.84657 0.85051 0.73931 0.88781 0.93360 0.90887 0.86573 0.90291 0.87727 0.82366 0.83782 0.86479 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.48 11.25 21.88 0.25 -44.23 16 2 C 0.04 1.92 5.25 85.36 0.45 2.37 16 3 Si 0.97 43.07 29.57 68.60 2.03 45.10 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.46 -27.13 7.78 23.41 0.18 -26.95 16 8 H 0.08 5.15 5.73 -2.91 -0.02 5.13 16 9 C 0.12 6.69 5.48 -21.11 -0.12 6.57 16 10 C -0.17 -8.92 8.62 22.72 0.20 -8.72 16 11 C -0.09 -3.84 10.01 22.26 0.22 -3.62 16 12 C -0.23 -8.86 10.03 22.41 0.22 -8.64 16 13 C -0.05 -2.16 9.52 22.50 0.21 -1.94 16 14 C -0.28 -13.55 5.92 -19.70 -0.12 -13.67 16 15 C 0.56 27.06 6.19 86.67 0.54 27.60 16 16 O -0.56 -31.89 12.88 -4.05 -0.05 -31.94 16 17 N -0.52 -19.65 5.47 -175.88 -0.96 -20.61 16 18 N -0.44 -15.09 3.22 -337.68 -1.09 -16.17 16 19 C 0.13 3.23 6.78 86.44 0.59 3.81 16 20 C -0.12 -2.04 6.11 30.69 0.19 -1.85 16 21 C -0.07 -1.26 5.78 29.77 0.17 -1.09 16 22 C -0.15 -4.23 5.76 -19.75 -0.11 -4.35 16 23 C -0.08 -1.94 9.66 22.31 0.22 -1.72 16 24 C -0.17 -4.66 10.04 22.26 0.22 -4.44 16 25 C -0.10 -3.61 10.05 22.24 0.22 -3.39 16 26 C -0.20 -8.14 8.80 22.42 0.20 -7.94 16 27 C 0.20 7.29 6.29 38.14 0.24 7.53 16 28 H 0.29 14.24 8.29 -92.71 -0.77 13.47 16 29 H 0.10 5.34 6.72 -2.91 -0.02 5.32 16 30 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 32 H 0.13 4.02 6.42 -2.91 -0.02 4.00 16 33 H 0.42 12.90 6.88 -213.33 -1.47 11.44 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 1.31 8.12 -2.39 -0.02 1.29 16 40 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.08 3.97 5.91 -2.91 -0.02 3.96 16 Total: -1.00 -74.23 350.85 3.48 -70.75 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -0.42 Total: 37.53 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 3.72 Total: -40.42 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -1.80 Total: -81.02 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.05 Total: -31.94 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.23 3.48 -70.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412875410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.492 kcal (2) G-P(sol) polarization free energy of solvation -74.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds