Wall clock time and date at job start Tue Mar 31 2020 13:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48501 * 109.47174 * 264.66685 * 3 2 1 5 5 H 1.48498 * 109.46748 * 24.67010 * 3 2 1 6 6 H 1.48498 * 109.46658 * 144.66854 * 3 2 1 7 7 C 1.37878 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00213 * 4.98305 * 7 2 1 9 9 C 1.50703 * 120.00092 * 184.98420 * 7 2 1 10 10 H 1.09002 * 109.46680 * 25.09395 * 9 7 2 11 11 C 1.50691 * 109.47089 * 145.09568 * 9 7 2 12 12 O 1.21284 * 119.99776 * 120.00167 * 11 9 7 13 13 N 1.34777 * 120.00237 * 300.00071 * 11 9 7 14 14 C 1.46500 * 120.00066 * 180.02562 * 13 11 9 15 15 C 1.50696 * 109.47258 * 180.02562 * 14 13 11 16 16 C 1.32568 * 120.00031 * 125.00065 * 15 14 13 17 17 C 1.47814 * 119.99854 * 179.97438 * 16 15 14 18 18 C 1.39957 * 120.55914 * 179.97438 * 17 16 15 19 19 C 1.38369 * 118.30037 * 180.02562 * 18 17 16 20 20 C 1.38344 * 119.30076 * 0.02562 * 19 18 17 21 21 N 1.31901 * 121.07256 * 0.02562 * 20 19 18 22 22 C 1.31719 * 121.87259 * 359.65427 * 21 20 19 23 23 C 1.50696 * 109.47076 * 265.09896 * 9 7 2 24 24 C 1.38237 * 119.99972 * 305.02138 * 23 9 7 25 25 C 1.38235 * 119.99921 * 179.81077 * 24 23 9 26 26 C 1.38236 * 120.00103 * 0.39634 * 25 24 23 27 27 C 1.38236 * 119.99862 * 359.85500 * 26 25 24 28 28 C 1.38232 * 120.00157 * 125.29374 * 23 9 7 29 29 H 0.97002 * 120.00277 * 359.97438 * 1 2 3 30 30 H 0.96992 * 119.99925 * 0.02562 * 13 11 9 31 31 H 1.09002 * 109.47517 * 300.00145 * 14 13 11 32 32 H 1.09005 * 109.47064 * 59.99952 * 14 13 11 33 33 H 1.08002 * 120.00015 * 304.99923 * 15 14 13 34 34 H 1.07992 * 119.99932 * 359.97438 * 16 15 14 35 35 H 1.08007 * 120.84976 * 359.97438 * 18 17 16 36 36 H 1.07991 * 120.35347 * 180.02562 * 19 18 17 37 37 H 1.07993 * 119.46351 * 179.97438 * 20 19 18 38 38 H 1.07997 * 119.71361 * 180.33709 * 22 21 20 39 39 H 1.08000 * 120.00328 * 359.97438 * 24 23 9 40 40 H 1.08007 * 119.99552 * 180.22502 * 25 24 23 41 41 H 1.07995 * 119.99756 * 179.83432 * 26 25 24 42 42 H 1.07992 * 119.99997 * 179.97438 * 27 26 25 43 43 H 1.08000 * 119.99894 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6093 1.9814 -1.3940 5 1 1.3948 2.6825 0.5844 6 1 3.4858 1.4752 0.8097 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1276 -0.0822 9 6 3.5072 -1.1966 0.1129 10 1 3.8352 -0.2866 0.6152 11 6 3.9488 -2.3972 0.9094 12 8 4.6845 -3.2206 0.4076 13 7 3.5262 -2.5560 2.1793 14 6 3.9560 -3.7229 2.9538 15 6 3.3478 -3.6633 4.3313 16 6 2.6320 -4.6829 4.7845 17 6 2.0360 -4.6246 6.1359 18 6 1.2778 -5.6941 6.6260 19 6 0.7411 -5.5897 7.8971 20 6 0.9684 -4.4423 8.6358 21 7 1.6864 -3.4494 8.1476 22 6 2.2230 -3.5044 6.9459 23 6 4.1148 -1.2566 -1.2649 24 6 3.7601 -2.2721 -2.1331 25 6 4.3145 -2.3250 -3.3983 26 6 5.2298 -1.3670 -3.7924 27 6 5.5885 -0.3544 -2.9223 28 6 5.0312 -0.2994 -1.6585 29 1 -0.4850 0.8400 0.0004 30 1 2.9376 -1.8977 2.5804 31 1 3.6284 -4.6332 2.4515 32 1 5.0429 -3.7243 3.0359 33 1 3.4951 -2.7899 4.9493 34 1 2.4844 -5.5561 4.1665 35 1 1.1150 -6.5780 6.0269 36 1 0.1511 -6.3954 8.3082 37 1 0.5504 -4.3579 9.6280 38 1 2.8094 -2.6732 6.5830 39 1 3.0478 -3.0228 -1.8240 40 1 4.0345 -3.1163 -4.0779 41 1 5.6649 -1.4098 -4.7799 42 1 6.3039 0.3937 -3.2300 43 1 5.3113 0.4917 -0.9787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413026495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:22 Heat of formation + Delta-G solvation = 34.784073 kcal Electronic energy + Delta-G solvation = -25190.320545 eV Core-core repulsion = 21586.336132 eV Total energy + Delta-G solvation = -3603.984412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.26338 -39.35056 -37.95653 -35.85054 -33.68750 -33.54163 -32.39072 -31.52271 -30.28343 -30.12837 -27.91911 -25.94098 -23.99103 -23.56156 -22.69404 -21.85034 -20.94530 -20.06908 -19.10759 -17.52171 -17.15268 -16.65899 -16.12351 -16.01834 -15.81221 -15.22170 -14.66617 -14.44799 -14.26299 -14.11114 -13.93893 -13.72032 -13.30227 -13.12381 -12.91151 -12.72481 -12.64979 -12.44240 -12.07493 -11.88239 -11.68210 -11.47458 -11.16261 -11.00212 -10.86940 -10.46859 -10.24069 -9.92713 -9.85085 -9.63796 -9.54892 -9.04432 -8.76588 -8.56012 -8.32247 -8.13086 -7.80829 -6.31650 -4.36004 0.53117 1.05024 2.15011 2.20774 2.28356 3.13994 3.22440 3.27003 3.56626 3.71353 4.01015 4.20970 4.22039 4.50272 4.58913 4.65196 4.70448 4.78604 4.98444 5.00120 5.18012 5.34412 5.55344 5.57027 5.60278 5.64015 5.71017 5.77183 5.85111 5.95520 5.95846 6.12840 6.29104 6.32723 6.34869 6.46383 6.48835 6.54547 6.74613 6.85577 7.06432 7.17455 7.25575 7.27405 7.59250 7.76794 7.80238 8.17578 8.26797 8.68393 9.08046 9.26301 10.79283 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.002853 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.140882 B = 9811.859081 C =10835.962659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.086 3.914 3 Si 0.866 3.134 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.511 4.511 8 H 0.082 0.918 9 C 0.019 3.981 10 H 0.073 0.927 11 C 0.536 3.464 12 O -0.562 6.562 13 N -0.726 5.726 14 C 0.149 3.851 15 C -0.140 4.140 16 C -0.110 4.110 17 C -0.099 4.099 18 C -0.069 4.069 19 C -0.171 4.171 20 C 0.090 3.910 21 N -0.483 5.483 22 C 0.103 3.897 23 C -0.028 4.028 24 C -0.073 4.073 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.129 4.129 28 C -0.137 4.137 29 H 0.269 0.731 30 H 0.407 0.593 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 -7.388 10.469 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.119 4.119 3 Si 0.693 3.307 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.548 4.548 8 H 0.100 0.900 9 C -0.003 4.003 10 H 0.091 0.909 11 C 0.325 3.675 12 O -0.441 6.441 13 N -0.379 5.379 14 C 0.026 3.974 15 C -0.158 4.158 16 C -0.129 4.129 17 C -0.101 4.101 18 C -0.094 4.094 19 C -0.191 4.191 20 C -0.067 4.067 21 N -0.190 5.190 22 C -0.054 4.054 23 C -0.029 4.029 24 C -0.091 4.091 25 C -0.147 4.147 26 C -0.161 4.161 27 C -0.147 4.147 28 C -0.155 4.155 29 H 0.079 0.921 30 H 0.243 0.757 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.070 -7.112 10.628 13.757 hybrid contribution -0.249 0.465 -0.394 0.658 sum 4.821 -6.647 10.234 13.121 Atomic orbital electron populations 1.69860 1.06197 1.27520 1.48216 1.24973 0.94692 0.98757 0.93484 0.87023 0.80155 0.83810 0.79743 1.19151 1.21111 1.18674 1.20528 0.86224 0.95348 1.52745 0.90001 1.18575 0.98323 0.93915 0.89440 0.90883 1.21153 0.77702 0.87916 0.80732 1.90597 1.37516 1.45825 1.70118 1.45863 1.52299 1.25776 1.13923 1.20196 0.98891 0.90466 0.87864 1.23511 0.96867 0.98577 0.96843 1.21560 0.97905 1.00026 0.93425 1.20091 0.98967 0.95487 0.95551 1.21736 0.94417 0.97969 0.95316 1.22093 1.01604 0.99872 0.95510 1.22810 0.94802 0.89210 0.99839 1.67636 1.08476 1.29101 1.13837 1.23052 0.96340 0.96696 0.89336 1.20077 0.92366 0.93295 0.97126 1.20841 0.98015 0.97653 0.92605 1.21033 0.98166 0.98962 0.96574 1.20859 0.99863 0.96338 0.99085 1.20882 1.00680 0.98694 0.94412 1.20973 0.98199 0.99741 0.96608 0.92099 0.75743 0.91397 0.90899 0.86209 0.85685 0.84564 0.84709 0.82868 0.82450 0.86540 0.87131 0.87333 0.87267 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.75 13.96 55.43 0.77 -23.97 16 2 C 0.09 2.25 5.47 -17.82 -0.10 2.15 16 3 Si 0.87 19.77 27.18 -169.99 -4.62 15.15 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.52 6.06 56.52 0.34 -5.18 16 7 C -0.51 -12.94 8.06 -34.44 -0.28 -13.22 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 9 C 0.02 0.42 1.89 -94.08 -0.18 0.25 16 10 H 0.07 1.60 4.89 -51.93 -0.25 1.35 16 11 C 0.54 11.34 7.04 -10.99 -0.08 11.26 16 12 O -0.56 -13.01 15.37 5.55 0.09 -12.92 16 13 N -0.73 -12.65 5.45 -61.47 -0.33 -12.98 16 14 C 0.15 2.10 6.12 -5.20 -0.03 2.07 16 15 C -0.14 -1.58 9.06 -36.22 -0.33 -1.91 16 16 C -0.11 -1.17 9.54 -37.57 -0.36 -1.53 16 17 C -0.10 -1.07 5.88 -104.87 -0.62 -1.69 16 18 C -0.07 -0.64 9.94 -38.89 -0.39 -1.02 16 19 C -0.17 -1.44 10.10 -39.49 -0.40 -1.83 16 20 C 0.09 0.86 11.17 -17.48 -0.20 0.67 16 21 N -0.48 -5.82 10.35 -12.92 -0.13 -5.96 16 22 C 0.10 1.18 10.58 -17.13 -0.18 1.00 16 23 C -0.03 -0.61 4.09 -104.63 -0.43 -1.04 16 24 C -0.07 -1.59 8.25 -39.58 -0.33 -1.91 16 25 C -0.13 -2.44 10.05 -39.58 -0.40 -2.83 16 26 C -0.14 -2.51 10.05 -39.58 -0.40 -2.90 16 27 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 28 C -0.14 -2.78 9.46 -39.58 -0.37 -3.16 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.41 6.81 8.35 -40.82 -0.34 6.47 16 31 H 0.07 1.00 7.81 -51.93 -0.41 0.59 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.12 1.20 6.07 -52.49 -0.32 0.88 16 34 H 0.13 1.22 7.86 -52.49 -0.41 0.81 16 35 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.16 1.57 6.19 -52.49 -0.32 1.24 16 39 H 0.12 2.61 7.93 -52.49 -0.42 2.20 16 40 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.11 2.02 7.95 -52.49 -0.42 1.61 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -31.45 369.27 -9.58 -41.03 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -5.47 Total: 12.48 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -5.45 Total: -18.38 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.30 Total: -42.91 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.62 Total: 15.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.45 -9.58 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413026495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.810 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds