Wall clock time and date at job start Tue Mar 31 2020 13:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48501 * 109.47174 * 264.66685 * 3 2 1 5 5 H 1.48498 * 109.46748 * 24.67010 * 3 2 1 6 6 H 1.48498 * 109.46658 * 144.66854 * 3 2 1 7 7 C 1.37878 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00213 * 4.98305 * 7 2 1 9 9 C 1.50703 * 120.00092 * 184.98420 * 7 2 1 10 10 H 1.09002 * 109.46680 * 25.09395 * 9 7 2 11 11 C 1.50691 * 109.47089 * 145.09568 * 9 7 2 12 12 O 1.21284 * 119.99776 * 120.00167 * 11 9 7 13 13 N 1.34777 * 120.00237 * 300.00071 * 11 9 7 14 14 C 1.46500 * 120.00066 * 180.02562 * 13 11 9 15 15 C 1.50696 * 109.47258 * 180.02562 * 14 13 11 16 16 C 1.32568 * 120.00031 * 125.00065 * 15 14 13 17 17 C 1.47814 * 119.99854 * 179.97438 * 16 15 14 18 18 C 1.39957 * 120.55914 * 179.97438 * 17 16 15 19 19 C 1.38369 * 118.30037 * 180.02562 * 18 17 16 20 20 C 1.38344 * 119.30076 * 0.02562 * 19 18 17 21 21 N 1.31901 * 121.07256 * 0.02562 * 20 19 18 22 22 C 1.31719 * 121.87259 * 359.65427 * 21 20 19 23 23 C 1.50696 * 109.47076 * 265.09896 * 9 7 2 24 24 C 1.38237 * 119.99972 * 305.02138 * 23 9 7 25 25 C 1.38235 * 119.99921 * 179.81077 * 24 23 9 26 26 C 1.38236 * 120.00103 * 0.39634 * 25 24 23 27 27 C 1.38236 * 119.99862 * 359.85500 * 26 25 24 28 28 C 1.38232 * 120.00157 * 125.29374 * 23 9 7 29 29 H 0.97002 * 120.00277 * 359.97438 * 1 2 3 30 30 H 0.96992 * 119.99925 * 0.02562 * 13 11 9 31 31 H 1.09002 * 109.47517 * 300.00145 * 14 13 11 32 32 H 1.09005 * 109.47064 * 59.99952 * 14 13 11 33 33 H 1.08002 * 120.00015 * 304.99923 * 15 14 13 34 34 H 1.07992 * 119.99932 * 359.97438 * 16 15 14 35 35 H 1.08007 * 120.84976 * 359.97438 * 18 17 16 36 36 H 1.07991 * 120.35347 * 180.02562 * 19 18 17 37 37 H 1.07993 * 119.46351 * 179.97438 * 20 19 18 38 38 H 1.07997 * 119.71361 * 180.33709 * 22 21 20 39 39 H 1.08000 * 120.00328 * 359.97438 * 24 23 9 40 40 H 1.08007 * 119.99552 * 180.22502 * 25 24 23 41 41 H 1.07995 * 119.99756 * 179.83432 * 26 25 24 42 42 H 1.07992 * 119.99997 * 179.97438 * 27 26 25 43 43 H 1.08000 * 119.99894 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6093 1.9814 -1.3940 5 1 1.3948 2.6825 0.5844 6 1 3.4858 1.4752 0.8097 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1276 -0.0822 9 6 3.5072 -1.1966 0.1129 10 1 3.8352 -0.2866 0.6152 11 6 3.9488 -2.3972 0.9094 12 8 4.6845 -3.2206 0.4076 13 7 3.5262 -2.5560 2.1793 14 6 3.9560 -3.7229 2.9538 15 6 3.3478 -3.6633 4.3313 16 6 2.6320 -4.6829 4.7845 17 6 2.0360 -4.6246 6.1359 18 6 1.2778 -5.6941 6.6260 19 6 0.7411 -5.5897 7.8971 20 6 0.9684 -4.4423 8.6358 21 7 1.6864 -3.4494 8.1476 22 6 2.2230 -3.5044 6.9459 23 6 4.1148 -1.2566 -1.2649 24 6 3.7601 -2.2721 -2.1331 25 6 4.3145 -2.3250 -3.3983 26 6 5.2298 -1.3670 -3.7924 27 6 5.5885 -0.3544 -2.9223 28 6 5.0312 -0.2994 -1.6585 29 1 -0.4850 0.8400 0.0004 30 1 2.9376 -1.8977 2.5804 31 1 3.6284 -4.6332 2.4515 32 1 5.0429 -3.7243 3.0359 33 1 3.4951 -2.7899 4.9493 34 1 2.4844 -5.5561 4.1665 35 1 1.1150 -6.5780 6.0269 36 1 0.1511 -6.3954 8.3082 37 1 0.5504 -4.3579 9.6280 38 1 2.8094 -2.6732 6.5830 39 1 3.0478 -3.0228 -1.8240 40 1 4.0345 -3.1163 -4.0779 41 1 5.6649 -1.4098 -4.7799 42 1 6.3039 0.3937 -3.2300 43 1 5.3113 0.4917 -0.9787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413026495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:21 Heat of formation + Delta-G solvation = 16.398433 kcal Electronic energy + Delta-G solvation = -25191.117806 eV Core-core repulsion = 21586.336132 eV Total energy + Delta-G solvation = -3604.781674 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07340 -40.91522 -39.45205 -36.96895 -35.52253 -34.75607 -33.36087 -33.15573 -31.62051 -31.28015 -29.48437 -27.15650 -25.35568 -24.71149 -23.66471 -23.34890 -22.42292 -21.25059 -20.44857 -19.10864 -18.30753 -17.96317 -17.67439 -17.11564 -16.82664 -16.55386 -16.28197 -15.86050 -15.50972 -15.37220 -14.97239 -14.90899 -14.72913 -14.30232 -14.20337 -14.06971 -13.97842 -13.88187 -13.56196 -13.44527 -12.96604 -12.71549 -12.56122 -12.41778 -12.02858 -11.96160 -11.75545 -11.61576 -11.40009 -10.91318 -10.63671 -10.51198 -10.41545 -9.97408 -9.63713 -9.38064 -9.27191 -8.34561 -6.42478 -0.27405 0.31365 0.64986 0.71283 1.32536 1.38553 1.40152 1.44102 1.87982 2.30027 2.60369 2.95972 2.98081 3.17423 3.43982 3.62042 3.86437 3.97953 4.07425 4.10512 4.19957 4.22654 4.24524 4.34349 4.39736 4.43427 4.52158 4.60525 4.63630 4.77690 4.83043 4.85701 4.91285 5.10397 5.19133 5.20585 5.32864 5.39890 5.49266 5.54443 5.68857 5.70799 5.74793 5.78686 5.95090 6.20630 6.31268 6.60148 6.70051 7.00135 7.22767 7.45163 8.79860 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.002853 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.140882 B = 9811.859081 C =10835.962659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.038 3.962 3 Si 0.920 3.080 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.233 1.233 7 C -0.499 4.499 8 H 0.038 0.962 9 C 0.021 3.979 10 H 0.080 0.920 11 C 0.532 3.468 12 O -0.586 6.586 13 N -0.717 5.717 14 C 0.152 3.848 15 C -0.150 4.150 16 C -0.096 4.096 17 C -0.117 4.117 18 C -0.073 4.073 19 C -0.166 4.166 20 C 0.081 3.919 21 N -0.513 5.513 22 C 0.087 3.913 23 C -0.057 4.057 24 C -0.104 4.104 25 C -0.133 4.133 26 C -0.137 4.137 27 C -0.125 4.125 28 C -0.153 4.153 29 H 0.270 0.730 30 H 0.410 0.590 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.179 0.821 38 H 0.162 0.838 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.148 -7.082 10.600 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.162 4.162 3 Si 0.744 3.256 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.156 1.156 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.000 4.000 10 H 0.098 0.902 11 C 0.320 3.680 12 O -0.467 6.467 13 N -0.368 5.368 14 C 0.029 3.971 15 C -0.168 4.168 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.098 4.098 19 C -0.185 4.185 20 C -0.075 4.075 21 N -0.222 5.222 22 C -0.070 4.070 23 C -0.058 4.058 24 C -0.123 4.123 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.143 4.143 28 C -0.171 4.171 29 H 0.079 0.921 30 H 0.246 0.754 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.176 0.824 36 H 0.186 0.814 37 H 0.196 0.804 38 H 0.179 0.821 39 H 0.108 0.892 40 H 0.152 0.848 41 H 0.168 0.832 42 H 0.166 0.834 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.624 -6.820 10.793 14.383 hybrid contribution -0.772 0.198 -0.415 0.899 sum 5.852 -6.621 10.377 13.630 Atomic orbital electron populations 1.69991 1.07973 1.28390 1.50467 1.25676 0.95240 1.02096 0.93217 0.86136 0.80055 0.79452 0.79935 1.19389 1.20970 1.15628 1.20449 0.87958 0.93571 1.51730 0.94377 1.18502 0.96100 0.94792 0.90605 0.90202 1.20990 0.77816 0.87469 0.81733 1.90568 1.38855 1.46379 1.70911 1.45863 1.51283 1.26615 1.13084 1.20283 0.99352 0.88649 0.88818 1.23332 0.98130 0.99793 0.95583 1.21688 0.96482 0.99874 0.93542 1.20157 1.00084 0.96192 0.95449 1.22113 0.93566 0.98138 0.96011 1.22460 1.00954 1.00223 0.94878 1.23359 0.94047 0.89093 1.01012 1.67639 1.09701 1.30543 1.14288 1.23207 0.96868 0.97301 0.89639 1.20116 0.94223 0.94705 0.96757 1.20833 0.99067 0.97841 0.94515 1.21358 0.98005 1.00121 0.95643 1.21347 0.98458 0.94974 1.00683 1.21367 1.00337 0.99306 0.93278 1.21245 0.98127 0.99556 0.98186 0.92092 0.75410 0.92190 0.90499 0.84945 0.84869 0.82422 0.81404 0.80386 0.82076 0.89246 0.84782 0.83232 0.83411 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.96 21.45 0.30 -53.79 16 2 C 0.04 2.04 5.47 84.66 0.46 2.51 16 3 Si 0.92 40.55 27.18 68.60 1.86 42.41 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.23 -9.07 6.06 99.48 0.60 -8.47 16 7 C -0.50 -26.41 8.06 25.60 0.21 -26.20 16 8 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 9 C 0.02 0.98 1.89 -13.04 -0.02 0.95 16 10 H 0.08 3.46 4.89 -2.39 -0.01 3.45 16 11 C 0.53 23.16 7.04 87.65 0.62 23.78 16 12 O -0.59 -27.95 15.37 -3.04 -0.05 -28.00 16 13 N -0.72 -25.68 5.45 -466.79 -2.54 -28.22 16 14 C 0.15 4.35 6.12 85.63 0.52 4.88 16 15 C -0.15 -3.40 9.06 24.53 0.22 -3.18 16 16 C -0.10 -2.03 9.54 23.65 0.23 -1.80 16 17 C -0.12 -2.44 5.88 -20.02 -0.12 -2.56 16 18 C -0.07 -1.22 9.94 22.72 0.23 -1.00 16 19 C -0.17 -2.39 10.10 22.33 0.23 -2.17 16 20 C 0.08 1.43 11.17 84.71 0.95 2.38 16 21 N -0.51 -12.11 10.35 -194.79 -2.02 -14.13 16 22 C 0.09 1.97 10.58 85.01 0.90 2.87 16 23 C -0.06 -2.55 4.09 -19.87 -0.08 -2.63 16 24 C -0.10 -4.64 8.25 22.27 0.18 -4.46 16 25 C -0.13 -4.86 10.05 22.27 0.22 -4.64 16 26 C -0.14 -4.31 10.05 22.27 0.22 -4.09 16 27 C -0.13 -4.07 10.05 22.27 0.22 -3.84 16 28 C -0.15 -5.93 9.46 22.27 0.21 -5.72 16 29 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.41 14.09 8.35 -92.71 -0.77 13.32 16 31 H 0.06 1.82 7.81 -2.39 -0.02 1.80 16 32 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.13 2.64 6.07 -2.91 -0.02 2.62 16 34 H 0.13 2.52 7.86 -2.91 -0.02 2.50 16 35 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.17 1.24 8.06 -2.92 -0.02 1.22 16 37 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.16 3.27 6.19 -2.91 -0.02 3.25 16 39 H 0.09 4.32 7.93 -2.91 -0.02 4.29 16 40 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 41 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.12 4.24 7.95 -2.91 -0.02 4.22 16 Total: -1.00 -71.03 369.27 3.11 -67.92 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: 0.15 Total: 38.73 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 5.40 Total: -24.93 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -4.26 Total: -96.14 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.05 Total: -28.00 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 1.86 Total: 42.41 kcal Total: -71.03 3.11 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413026495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.323 kcal (2) G-P(sol) polarization free energy of solvation -71.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds