Wall clock time and date at job start Tue Mar 31 2020 13:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99770 * 2 1 4 4 H 1.48498 * 109.46926 * 95.31209 * 3 2 1 5 5 H 1.48502 * 109.46936 * 215.30991 * 3 2 1 6 6 H 1.48497 * 109.47369 * 335.30905 * 3 2 1 7 7 C 1.37876 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00085 * 8.38641 * 7 2 1 9 9 C 1.50697 * 119.99793 * 188.38328 * 7 2 1 10 10 H 1.08998 * 109.47302 * 333.08421 * 9 7 2 11 11 C 1.50703 * 109.47118 * 213.08654 * 9 7 2 12 12 O 1.21282 * 119.99547 * 239.99749 * 11 9 7 13 13 N 1.34768 * 119.99979 * 59.99912 * 11 9 7 14 14 C 1.46508 * 120.00099 * 179.97438 * 13 11 9 15 15 C 1.50697 * 109.47078 * 179.97438 * 14 13 11 16 16 C 1.32562 * 119.99801 * 125.00433 * 15 14 13 17 17 C 1.47816 * 120.00072 * 179.97438 * 16 15 14 18 18 C 1.39958 * 120.55633 * 179.97438 * 17 16 15 19 19 C 1.38371 * 118.29305 * 179.97438 * 18 17 16 20 20 C 1.38333 * 119.30557 * 0.02562 * 19 18 17 21 21 N 1.31903 * 121.07375 * 0.02562 * 20 19 18 22 22 C 1.31724 * 121.87011 * 359.66189 * 21 20 19 23 23 C 1.50704 * 109.47244 * 93.08470 * 9 7 2 24 24 C 1.38233 * 119.99760 * 53.81875 * 23 9 7 25 25 C 1.38236 * 119.99821 * 179.78368 * 24 23 9 26 26 C 1.38236 * 119.99998 * 0.44870 * 25 24 23 27 27 C 1.38232 * 119.99819 * 359.80888 * 26 25 24 28 28 C 1.38233 * 120.00233 * 359.97438 * 27 26 25 29 29 H 0.97000 * 120.00257 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00222 * 0.02562 * 13 11 9 31 31 H 1.09002 * 109.47063 * 300.00390 * 14 13 11 32 32 H 1.08998 * 109.46765 * 60.00117 * 14 13 11 33 33 H 1.07997 * 119.99995 * 304.99584 * 15 14 13 34 34 H 1.08003 * 119.99982 * 359.97438 * 16 15 14 35 35 H 1.08001 * 120.85569 * 359.97438 * 18 17 16 36 36 H 1.08004 * 120.34927 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.46675 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.71330 * 180.33759 * 22 21 20 39 39 H 1.08002 * 120.00182 * 0.02562 * 24 23 9 40 40 H 1.07996 * 120.00135 * 180.27649 * 25 24 23 41 41 H 1.08001 * 120.00230 * 179.82899 * 26 25 24 42 42 H 1.08000 * 119.99778 * 180.02562 * 27 26 25 43 43 H 1.07998 * 120.00229 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6088 1.9816 1.3941 5 1 3.4861 1.4752 -0.8093 6 1 1.3950 2.6825 -0.5848 7 6 2.0045 -1.1941 0.0005 8 1 1.4732 -2.1244 -0.1355 9 6 3.4994 -1.2009 0.1908 10 1 3.9143 -0.2550 -0.1572 11 6 4.1012 -2.3343 -0.5994 12 8 4.7278 -3.2037 -0.0316 13 7 3.9430 -2.3818 -1.9369 14 6 4.5285 -3.4833 -2.7052 15 6 4.2083 -3.3023 -4.1666 16 6 5.1861 -3.2782 -5.0613 17 6 4.8721 -3.1012 -6.4948 18 6 5.8954 -3.0735 -7.4492 19 6 5.5483 -2.9059 -8.7782 20 6 4.2140 -2.7718 -9.1179 21 7 3.2707 -2.8008 -8.1964 22 6 3.5505 -2.9641 -6.9196 23 6 3.8190 -1.3823 1.6524 24 6 3.2859 -2.4507 2.3490 25 6 3.5826 -2.6195 3.6885 26 6 4.4049 -1.7148 4.3337 27 6 4.9336 -0.6434 3.6384 28 6 4.6405 -0.4771 2.2977 29 1 -0.4850 0.8400 -0.0004 30 1 3.4421 -1.6862 -2.3911 31 1 5.6097 -3.4878 -2.5675 32 1 4.1140 -4.4295 -2.3573 33 1 3.1822 -3.1924 -4.4850 34 1 6.2123 -3.3878 -4.7428 35 1 6.9293 -3.1801 -7.1561 36 1 6.3111 -2.8800 -9.5423 37 1 3.9403 -2.6405 -10.1543 38 1 2.7500 -2.9879 -6.1950 39 1 2.6408 -3.1556 1.8457 40 1 3.1698 -3.4567 4.2317 41 1 4.6345 -1.8451 5.3809 42 1 5.5764 0.0632 4.1423 43 1 5.0539 0.3597 1.7544 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413026497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:24 Heat of formation + Delta-G solvation = 34.260183 kcal Electronic energy + Delta-G solvation = -25155.387206 eV Core-core repulsion = 21551.380076 eV Total energy + Delta-G solvation = -3604.007130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.29797 -39.35025 -37.95155 -35.88103 -33.69635 -33.55797 -32.42401 -31.51259 -30.31143 -30.10845 -27.92864 -25.96135 -24.01921 -23.57359 -22.71710 -21.82497 -20.94266 -20.08890 -19.12119 -17.54859 -17.15320 -16.67602 -16.14880 -16.03207 -15.80150 -15.22883 -14.63209 -14.50112 -14.32341 -14.14275 -13.92957 -13.65628 -13.34368 -13.22590 -12.91044 -12.68571 -12.60624 -12.49577 -12.05234 -11.90758 -11.69179 -11.49312 -11.13365 -11.04858 -10.91056 -10.43490 -10.27021 -9.94671 -9.89047 -9.65971 -9.57110 -9.02288 -8.76508 -8.59536 -8.35417 -8.10940 -7.79925 -6.32081 -4.35878 0.49549 1.01242 2.16063 2.21256 2.26614 3.14704 3.20743 3.25186 3.54747 3.67903 3.99669 4.19884 4.20892 4.47559 4.54788 4.65627 4.66970 4.74283 4.95813 4.99963 5.14986 5.31732 5.54123 5.56834 5.61264 5.62153 5.70255 5.76254 5.81842 5.93185 5.96366 6.11992 6.28787 6.31513 6.33501 6.44628 6.47084 6.51478 6.75796 6.87062 7.04451 7.18938 7.27198 7.28699 7.61333 7.74588 7.82162 8.16532 8.25268 8.68172 9.06501 9.26284 10.79009 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.002848 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.825442 B = 9830.226661 C =10884.724703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.087 3.913 3 Si 0.864 3.136 4 H -0.266 1.266 5 H -0.263 1.263 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.082 0.918 9 C 0.023 3.977 10 H 0.069 0.931 11 C 0.535 3.465 12 O -0.561 6.561 13 N -0.727 5.727 14 C 0.149 3.851 15 C -0.137 4.137 16 C -0.115 4.115 17 C -0.100 4.100 18 C -0.070 4.070 19 C -0.172 4.172 20 C 0.090 3.910 21 N -0.481 5.481 22 C 0.104 3.896 23 C -0.027 4.027 24 C -0.071 4.071 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.129 4.129 28 C -0.136 4.136 29 H 0.269 0.731 30 H 0.407 0.593 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.968 -3.765 -11.121 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.118 4.118 3 Si 0.691 3.309 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.100 0.900 9 C 0.002 3.998 10 H 0.086 0.914 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.379 5.379 14 C 0.025 3.975 15 C -0.155 4.155 16 C -0.134 4.134 17 C -0.102 4.102 18 C -0.096 4.096 19 C -0.192 4.192 20 C -0.066 4.066 21 N -0.189 5.189 22 C -0.054 4.054 23 C -0.028 4.028 24 C -0.090 4.090 25 C -0.148 4.148 26 C -0.161 4.161 27 C -0.147 4.147 28 C -0.154 4.154 29 H 0.079 0.921 30 H 0.242 0.758 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.346 -4.178 -10.979 15.653 hybrid contribution 0.945 1.215 0.006 1.539 sum 11.290 -2.962 -10.973 16.020 Atomic orbital electron populations 1.69875 1.06225 1.27544 1.47859 1.24969 0.94673 0.98733 0.93410 0.87001 0.80221 0.84021 0.79684 1.19152 1.18853 1.21013 1.20519 0.87205 0.95507 1.51889 0.89957 1.18490 0.98609 0.94166 0.88557 0.91366 1.21175 0.77459 0.87468 0.81460 1.90599 1.42184 1.41077 1.70074 1.45870 1.57133 1.27414 1.07525 1.20207 0.98524 0.91766 0.86978 1.23584 0.99668 0.97552 0.94689 1.21543 0.99587 1.02130 0.90172 1.20092 0.94525 1.01058 0.94513 1.21719 0.99517 0.95769 0.92565 1.22090 0.98055 1.02050 0.96972 1.22826 0.89009 0.95632 0.99175 1.67658 1.37634 1.11730 1.01900 1.23109 0.95045 0.94584 0.92625 1.20056 0.92628 0.93355 0.96766 1.20841 0.97668 0.97184 0.93258 1.21030 0.99340 0.99232 0.95157 1.20858 1.00068 0.96204 0.98995 1.20872 1.01021 0.98254 0.94576 1.20960 0.99661 0.99805 0.94969 0.92084 0.75798 0.91524 0.90641 0.85932 0.85789 0.84646 0.84742 0.82856 0.82279 0.86496 0.87137 0.87354 0.87301 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.67 13.96 55.43 0.77 -23.90 16 2 C 0.09 2.28 5.47 -17.82 -0.10 2.18 16 3 Si 0.86 19.61 27.31 -169.99 -4.64 14.97 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.26 -5.55 6.41 56.52 0.36 -5.19 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -12.97 8.00 -34.44 -0.28 -13.24 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 9 C 0.02 0.52 1.98 -94.07 -0.19 0.34 16 10 H 0.07 1.50 4.82 -51.93 -0.25 1.25 16 11 C 0.54 11.29 7.04 -10.99 -0.08 11.22 16 12 O -0.56 -12.97 15.42 5.56 0.09 -12.89 16 13 N -0.73 -12.55 5.45 -61.47 -0.33 -12.89 16 14 C 0.15 2.07 6.12 -5.19 -0.03 2.04 16 15 C -0.14 -1.52 9.06 -36.22 -0.33 -1.85 16 16 C -0.11 -1.15 9.54 -37.57 -0.36 -1.51 16 17 C -0.10 -1.03 5.88 -104.87 -0.62 -1.64 16 18 C -0.07 -0.60 9.94 -38.89 -0.39 -0.99 16 19 C -0.17 -1.36 10.10 -39.50 -0.40 -1.76 16 20 C 0.09 0.84 11.17 -17.49 -0.20 0.64 16 21 N -0.48 -5.75 10.35 -12.92 -0.13 -5.88 16 22 C 0.10 1.17 10.58 -17.13 -0.18 0.99 16 23 C -0.03 -0.60 4.30 -104.62 -0.45 -1.05 16 24 C -0.07 -1.57 8.31 -39.58 -0.33 -1.89 16 25 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 26 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 27 C -0.13 -2.34 10.05 -39.59 -0.40 -2.74 16 28 C -0.14 -2.77 9.67 -39.58 -0.38 -3.15 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.41 6.70 8.35 -40.82 -0.34 6.36 16 31 H 0.07 0.91 7.81 -51.93 -0.41 0.51 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.12 1.29 6.07 -52.49 -0.32 0.97 16 34 H 0.12 1.08 7.87 -52.48 -0.41 0.67 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.16 1.63 6.19 -52.49 -0.32 1.30 16 39 H 0.12 2.65 7.89 -52.49 -0.41 2.24 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.11 2.01 7.96 -52.49 -0.42 1.59 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -31.36 370.20 -9.60 -40.97 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -5.44 Total: 12.24 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -5.49 Total: -18.20 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.31 Total: -42.67 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.64 Total: 14.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.36 -9.60 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413026497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.227 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds