Wall clock time and date at job start Tue Mar 31 2020 13:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47234 * 264.73707 * 3 2 1 5 5 H 1.48505 * 109.46935 * 24.73620 * 3 2 1 6 6 H 1.48498 * 109.46849 * 144.73406 * 3 2 1 7 7 C 1.37882 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00153 * 4.98907 * 7 2 1 9 9 C 1.50698 * 119.99369 * 184.98385 * 7 2 1 10 10 H 1.09000 * 109.47484 * 25.09907 * 9 7 2 11 11 C 1.50705 * 109.46627 * 145.09793 * 9 7 2 12 12 O 1.21281 * 120.00158 * 120.00249 * 11 9 7 13 13 N 1.34777 * 119.99920 * 299.99119 * 11 9 7 14 14 C 1.46503 * 120.00182 * 180.02562 * 13 11 9 15 15 C 1.50691 * 109.47155 * 180.02562 * 14 13 11 16 16 C 1.32570 * 120.00052 * 127.19965 * 15 14 13 17 17 C 1.47818 * 120.00018 * 8.71721 * 16 15 14 18 18 C 1.39954 * 120.55587 * 36.68166 * 17 16 15 19 19 C 1.38373 * 118.29403 * 180.02562 * 18 17 16 20 20 C 1.38332 * 119.30206 * 0.02562 * 19 18 17 21 21 N 1.31893 * 121.07560 * 0.02562 * 20 19 18 22 22 C 1.31725 * 121.87494 * 359.66101 * 21 20 19 23 23 C 1.50703 * 109.47009 * 265.09177 * 9 7 2 24 24 C 1.38232 * 120.00309 * 305.00634 * 23 9 7 25 25 C 1.38236 * 120.00077 * 179.81155 * 24 23 9 26 26 C 1.38239 * 119.99734 * 0.39855 * 25 24 23 27 27 C 1.38236 * 119.99839 * 359.85662 * 26 25 24 28 28 C 1.38230 * 120.00313 * 359.95903 * 27 26 25 29 29 H 0.96997 * 119.99934 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99652 * 0.02562 * 13 11 9 31 31 H 1.09000 * 109.46846 * 300.00734 * 14 13 11 32 32 H 1.08999 * 109.46956 * 60.00368 * 14 13 11 33 33 H 1.08007 * 120.00463 * 307.20162 * 15 14 13 34 34 H 1.07999 * 120.00066 * 188.71364 * 16 15 14 35 35 H 1.08003 * 120.85267 * 359.97438 * 18 17 16 36 36 H 1.08006 * 120.34467 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.46388 * 180.02562 * 20 19 18 38 38 H 1.07993 * 119.72039 * 180.33904 * 22 21 20 39 39 H 1.08000 * 119.99852 * 359.97438 * 24 23 9 40 40 H 1.07993 * 119.99855 * 180.23088 * 25 24 23 41 41 H 1.08001 * 119.99596 * 179.83627 * 26 25 24 42 42 H 1.08006 * 119.99556 * 179.97438 * 27 26 25 43 43 H 1.07996 * 119.99951 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6079 1.9822 -1.3942 5 1 1.3953 2.6822 0.5859 6 1 3.4866 1.4748 0.8084 7 6 2.0046 -1.1941 0.0005 8 1 1.4677 -2.1276 -0.0804 9 6 3.5073 -1.1964 0.1139 10 1 3.8352 -0.2860 0.6155 11 6 3.9489 -2.3964 0.9116 12 8 4.6847 -3.2202 0.4107 13 7 3.5264 -2.5539 2.1817 14 6 3.9561 -3.7201 2.9573 15 6 3.3480 -3.6591 4.3347 16 6 2.6689 -4.6956 4.8060 17 6 2.6691 -5.9765 4.0683 18 6 3.8214 -6.4165 3.4070 19 6 3.7692 -7.6224 2.7303 20 6 2.5910 -8.3473 2.7286 21 7 1.5199 -7.9071 3.3601 22 6 1.5219 -6.7688 4.0229 23 6 4.1149 -1.2578 -1.2638 24 6 3.7605 -2.2743 -2.1309 25 6 4.3149 -2.3283 -3.3961 26 6 5.2300 -1.3704 -3.7911 27 6 5.5883 -0.3569 -2.9221 28 6 5.0310 -0.3007 -1.6584 29 1 -0.4850 0.8400 -0.0004 30 1 2.9377 -1.8952 2.5822 31 1 3.6285 -4.6308 2.4558 32 1 5.0430 -3.7214 3.0394 33 1 3.4653 -2.7710 4.9380 34 1 2.1157 -4.6041 5.7290 35 1 4.7278 -5.8296 3.4236 36 1 4.6392 -7.9937 2.2090 37 1 2.5474 -9.2890 2.2017 38 1 0.6266 -6.4442 4.5321 39 1 3.0485 -3.0248 -1.8209 40 1 4.0352 -3.1204 -4.0748 41 1 5.6651 -1.4142 -4.7786 42 1 6.3036 0.3913 -3.2307 43 1 5.3107 0.4914 -0.9796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413026511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:30 Heat of formation + Delta-G solvation = 42.557626 kcal Electronic energy + Delta-G solvation = -25999.232560 eV Core-core repulsion = 22395.585234 eV Total energy + Delta-G solvation = -3603.647326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.27226 -39.32462 -37.96363 -36.06759 -33.67585 -33.27273 -32.05836 -31.51940 -30.13447 -30.12258 -28.00598 -26.16990 -23.71531 -23.45146 -22.99814 -21.85800 -20.97148 -19.83179 -18.96719 -17.22600 -17.14557 -16.58561 -16.31521 -16.08843 -15.47543 -15.09165 -15.01360 -14.58206 -14.29010 -13.94809 -13.78529 -13.70164 -13.26123 -13.08468 -12.82084 -12.69121 -12.60897 -12.31215 -12.21440 -11.93925 -11.87213 -11.20450 -11.16196 -11.00953 -10.48150 -10.38080 -10.22522 -9.93325 -9.71838 -9.55201 -9.46323 -9.03282 -8.74736 -8.48343 -8.39722 -8.13611 -7.81314 -6.31703 -4.36004 0.73991 1.21572 2.12042 2.17368 2.23483 3.12778 3.21249 3.26032 3.56688 3.78845 4.05474 4.20282 4.36331 4.62881 4.64863 4.75316 4.83580 4.90733 4.99569 5.03911 5.26354 5.51150 5.54696 5.59602 5.64738 5.67480 5.73113 5.80835 5.95088 5.98637 6.04846 6.15587 6.28690 6.32228 6.33052 6.45827 6.54700 6.64289 6.74111 6.85079 7.07348 7.16833 7.25219 7.27167 7.58960 7.79753 7.91082 8.17807 8.27153 8.68789 9.08278 9.25975 10.79272 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012367 B = 0.003831 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.573705 B = 7307.366509 C = 8400.666612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.085 3.915 3 Si 0.866 3.134 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.510 4.510 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.073 0.927 11 C 0.536 3.464 12 O -0.562 6.562 13 N -0.725 5.725 14 C 0.134 3.866 15 C -0.145 4.145 16 C -0.109 4.109 17 C -0.109 4.109 18 C -0.064 4.064 19 C -0.171 4.171 20 C 0.095 3.905 21 N -0.487 5.487 22 C 0.111 3.889 23 C -0.027 4.027 24 C -0.073 4.073 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.129 4.129 28 C -0.137 4.137 29 H 0.269 0.731 30 H 0.406 0.594 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.849 -7.511 7.398 13.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.119 4.119 3 Si 0.693 3.307 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.548 4.548 8 H 0.100 0.900 9 C -0.003 4.003 10 H 0.091 0.909 11 C 0.325 3.675 12 O -0.441 6.441 13 N -0.377 5.377 14 C 0.011 3.989 15 C -0.164 4.164 16 C -0.128 4.128 17 C -0.111 4.111 18 C -0.090 4.090 19 C -0.191 4.191 20 C -0.061 4.061 21 N -0.195 5.195 22 C -0.047 4.047 23 C -0.028 4.028 24 C -0.091 4.091 25 C -0.147 4.147 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.156 4.156 29 H 0.079 0.921 30 H 0.241 0.759 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.423 -8.495 7.003 13.279 hybrid contribution 0.758 1.879 0.098 2.029 sum 8.181 -6.616 7.102 12.694 Atomic orbital electron populations 1.69867 1.06182 1.27491 1.48229 1.24981 0.94699 0.98741 0.93520 0.87018 0.80109 0.83801 0.79746 1.19148 1.21114 1.18726 1.20525 0.86218 0.95340 1.52687 0.90049 1.18580 0.98340 0.93892 0.89442 0.90907 1.21151 0.77721 0.87916 0.80732 1.90588 1.37578 1.45772 1.70165 1.45876 1.52200 1.25772 1.13875 1.20719 0.98612 0.90752 0.88849 1.23449 0.97620 0.99066 0.96216 1.21552 0.99619 0.91568 1.00077 1.20085 0.95021 0.96374 0.99625 1.21911 0.98261 0.95020 0.93784 1.22102 1.00092 0.95911 1.00992 1.22784 0.88343 0.99402 0.95614 1.67614 1.29449 1.14575 1.07840 1.22949 0.96971 0.89543 0.95197 1.20070 0.92337 0.93273 0.97104 1.20837 0.97993 0.97639 0.92615 1.21032 0.98152 0.98962 0.96561 1.20861 0.99870 0.96330 0.99092 1.20880 1.00687 0.98685 0.94412 1.20969 0.98232 0.99745 0.96614 0.92107 0.75851 0.90481 0.91394 0.85545 0.85236 0.84364 0.84612 0.82875 0.82577 0.86598 0.87136 0.87322 0.87266 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.81 13.96 55.43 0.77 -24.04 16 2 C 0.09 2.24 5.47 -17.82 -0.10 2.15 16 3 Si 0.87 19.75 27.19 -169.99 -4.62 15.13 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -5.52 6.06 56.52 0.34 -5.18 16 7 C -0.51 -13.05 8.06 -34.44 -0.28 -13.33 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.02 0.43 1.89 -94.07 -0.18 0.25 16 10 H 0.07 1.60 4.89 -51.93 -0.25 1.35 16 11 C 0.54 11.50 7.04 -10.98 -0.08 11.42 16 12 O -0.56 -13.13 15.37 5.56 0.09 -13.05 16 13 N -0.72 -12.94 5.45 -61.47 -0.33 -13.27 16 14 C 0.13 1.96 4.42 -5.20 -0.02 1.94 16 15 C -0.15 -1.64 9.58 -36.22 -0.35 -1.99 16 16 C -0.11 -1.15 9.82 -37.57 -0.37 -1.52 16 17 C -0.11 -1.32 5.19 -104.87 -0.54 -1.87 16 18 C -0.06 -0.77 7.44 -38.89 -0.29 -1.06 16 19 C -0.17 -1.92 10.10 -39.50 -0.40 -2.32 16 20 C 0.09 1.11 11.17 -17.49 -0.20 0.92 16 21 N -0.49 -6.60 10.35 -12.92 -0.13 -6.74 16 22 C 0.11 1.39 10.95 -17.13 -0.19 1.20 16 23 C -0.03 -0.60 4.09 -104.62 -0.43 -1.03 16 24 C -0.07 -1.60 8.25 -39.58 -0.33 -1.93 16 25 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 26 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 27 C -0.13 -2.33 10.05 -39.59 -0.40 -2.72 16 28 C -0.14 -2.80 9.46 -39.58 -0.37 -3.17 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.41 6.91 8.35 -40.82 -0.34 6.57 16 31 H 0.08 1.25 4.80 -51.93 -0.25 1.00 16 32 H 0.07 0.96 7.98 -51.93 -0.41 0.55 16 33 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.14 1.52 6.33 -52.48 -0.33 1.18 16 36 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.12 2.66 7.93 -52.49 -0.42 2.24 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.11 2.03 7.95 -52.49 -0.42 1.61 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -31.66 364.71 -9.47 -41.12 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -5.42 Total: 14.17 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -5.31 Total: -18.83 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.30 Total: -44.05 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.62 Total: 15.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.66 -9.47 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413026511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.680 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds