Wall clock time and date at job start Tue Mar 31 2020 13:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47234 * 264.73707 * 3 2 1 5 5 H 1.48505 * 109.46935 * 24.73620 * 3 2 1 6 6 H 1.48498 * 109.46849 * 144.73406 * 3 2 1 7 7 C 1.37882 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00153 * 4.98907 * 7 2 1 9 9 C 1.50698 * 119.99369 * 184.98385 * 7 2 1 10 10 H 1.09000 * 109.47484 * 25.09907 * 9 7 2 11 11 C 1.50705 * 109.46627 * 145.09793 * 9 7 2 12 12 O 1.21281 * 120.00158 * 120.00249 * 11 9 7 13 13 N 1.34777 * 119.99920 * 299.99119 * 11 9 7 14 14 C 1.46503 * 120.00182 * 180.02562 * 13 11 9 15 15 C 1.50691 * 109.47155 * 180.02562 * 14 13 11 16 16 C 1.32570 * 120.00052 * 127.19965 * 15 14 13 17 17 C 1.47818 * 120.00018 * 8.71721 * 16 15 14 18 18 C 1.39954 * 120.55587 * 36.68166 * 17 16 15 19 19 C 1.38373 * 118.29403 * 180.02562 * 18 17 16 20 20 C 1.38332 * 119.30206 * 0.02562 * 19 18 17 21 21 N 1.31893 * 121.07560 * 0.02562 * 20 19 18 22 22 C 1.31725 * 121.87494 * 359.66101 * 21 20 19 23 23 C 1.50703 * 109.47009 * 265.09177 * 9 7 2 24 24 C 1.38232 * 120.00309 * 305.00634 * 23 9 7 25 25 C 1.38236 * 120.00077 * 179.81155 * 24 23 9 26 26 C 1.38239 * 119.99734 * 0.39855 * 25 24 23 27 27 C 1.38236 * 119.99839 * 359.85662 * 26 25 24 28 28 C 1.38230 * 120.00313 * 359.95903 * 27 26 25 29 29 H 0.96997 * 119.99934 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99652 * 0.02562 * 13 11 9 31 31 H 1.09000 * 109.46846 * 300.00734 * 14 13 11 32 32 H 1.08999 * 109.46956 * 60.00368 * 14 13 11 33 33 H 1.08007 * 120.00463 * 307.20162 * 15 14 13 34 34 H 1.07999 * 120.00066 * 188.71364 * 16 15 14 35 35 H 1.08003 * 120.85267 * 359.97438 * 18 17 16 36 36 H 1.08006 * 120.34467 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.46388 * 180.02562 * 20 19 18 38 38 H 1.07993 * 119.72039 * 180.33904 * 22 21 20 39 39 H 1.08000 * 119.99852 * 359.97438 * 24 23 9 40 40 H 1.07993 * 119.99855 * 180.23088 * 25 24 23 41 41 H 1.08001 * 119.99596 * 179.83627 * 26 25 24 42 42 H 1.08006 * 119.99556 * 179.97438 * 27 26 25 43 43 H 1.07996 * 119.99951 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6079 1.9822 -1.3942 5 1 1.3953 2.6822 0.5859 6 1 3.4866 1.4748 0.8084 7 6 2.0046 -1.1941 0.0005 8 1 1.4677 -2.1276 -0.0804 9 6 3.5073 -1.1964 0.1139 10 1 3.8352 -0.2860 0.6155 11 6 3.9489 -2.3964 0.9116 12 8 4.6847 -3.2202 0.4107 13 7 3.5264 -2.5539 2.1817 14 6 3.9561 -3.7201 2.9573 15 6 3.3480 -3.6591 4.3347 16 6 2.6689 -4.6956 4.8060 17 6 2.6691 -5.9765 4.0683 18 6 3.8214 -6.4165 3.4070 19 6 3.7692 -7.6224 2.7303 20 6 2.5910 -8.3473 2.7286 21 7 1.5199 -7.9071 3.3601 22 6 1.5219 -6.7688 4.0229 23 6 4.1149 -1.2578 -1.2638 24 6 3.7605 -2.2743 -2.1309 25 6 4.3149 -2.3283 -3.3961 26 6 5.2300 -1.3704 -3.7911 27 6 5.5883 -0.3569 -2.9221 28 6 5.0310 -0.3007 -1.6584 29 1 -0.4850 0.8400 -0.0004 30 1 2.9377 -1.8952 2.5822 31 1 3.6285 -4.6308 2.4558 32 1 5.0430 -3.7214 3.0394 33 1 3.4653 -2.7710 4.9380 34 1 2.1157 -4.6041 5.7290 35 1 4.7278 -5.8296 3.4236 36 1 4.6392 -7.9937 2.2090 37 1 2.5474 -9.2890 2.2017 38 1 0.6266 -6.4442 4.5321 39 1 3.0485 -3.0248 -1.8209 40 1 4.0352 -3.1204 -4.0748 41 1 5.6651 -1.4142 -4.7786 42 1 6.3036 0.3913 -3.2307 43 1 5.3107 0.4914 -0.9796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413026511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:30 Heat of formation + Delta-G solvation = 23.649959 kcal Electronic energy + Delta-G solvation = -26000.052458 eV Core-core repulsion = 22395.585234 eV Total energy + Delta-G solvation = -3604.467224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27247 -40.87118 -39.46092 -37.20614 -35.53418 -34.61560 -33.33860 -32.97624 -31.63711 -31.15814 -29.57191 -27.46422 -25.40742 -24.40873 -24.12107 -23.37794 -22.47315 -21.17120 -20.21497 -19.11905 -18.29507 -17.82267 -17.61437 -17.48368 -16.70637 -16.49501 -16.18341 -16.08821 -15.79349 -15.34480 -15.09951 -14.82576 -14.71798 -14.37508 -14.31454 -14.14626 -13.85650 -13.79142 -13.46577 -13.33266 -13.17551 -12.96401 -12.72075 -12.13019 -12.03719 -11.96985 -11.63719 -11.41575 -11.34827 -10.92349 -10.67903 -10.55748 -10.37531 -9.89565 -9.65379 -9.43639 -9.35584 -8.34875 -6.43448 -0.18103 0.27924 0.63360 0.69662 1.24357 1.32112 1.40316 1.44363 1.86834 2.29720 2.60129 2.88557 2.96817 3.16247 3.49869 3.71289 3.87785 3.91904 3.99532 4.09152 4.14455 4.20902 4.27572 4.30521 4.36083 4.38443 4.50970 4.59443 4.66967 4.79536 4.81310 4.89154 4.92124 5.06553 5.15887 5.19222 5.30964 5.38595 5.42312 5.56309 5.68910 5.70546 5.73174 5.77214 5.93846 6.19632 6.29730 6.58961 6.69702 6.97583 7.21684 7.44437 8.79777 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012367 B = 0.003831 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.573705 B = 7307.366509 C = 8400.666612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.037 3.963 3 Si 0.924 3.076 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.232 1.232 7 C -0.500 4.500 8 H 0.033 0.967 9 C 0.022 3.978 10 H 0.082 0.918 11 C 0.530 3.470 12 O -0.586 6.586 13 N -0.716 5.716 14 C 0.133 3.867 15 C -0.152 4.152 16 C -0.096 4.096 17 C -0.122 4.122 18 C -0.077 4.077 19 C -0.176 4.176 20 C 0.084 3.916 21 N -0.513 5.513 22 C 0.096 3.904 23 C -0.055 4.055 24 C -0.105 4.105 25 C -0.134 4.134 26 C -0.137 4.137 27 C -0.124 4.124 28 C -0.153 4.153 29 H 0.270 0.730 30 H 0.410 0.590 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.178 0.822 38 H 0.173 0.827 39 H 0.085 0.915 40 H 0.133 0.867 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.188 -6.164 7.320 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.163 4.163 3 Si 0.747 3.253 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.155 1.155 7 C -0.538 4.538 8 H 0.051 0.949 9 C 0.000 4.000 10 H 0.100 0.900 11 C 0.319 3.681 12 O -0.467 6.467 13 N -0.367 5.367 14 C 0.011 3.989 15 C -0.170 4.170 16 C -0.116 4.116 17 C -0.124 4.124 18 C -0.102 4.102 19 C -0.195 4.195 20 C -0.072 4.072 21 N -0.222 5.222 22 C -0.061 4.061 23 C -0.056 4.056 24 C -0.123 4.123 25 C -0.152 4.152 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.171 4.171 29 H 0.080 0.920 30 H 0.246 0.754 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.162 0.838 36 H 0.175 0.825 37 H 0.195 0.805 38 H 0.190 0.810 39 H 0.103 0.897 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.773 -7.164 6.963 13.976 hybrid contribution 0.038 1.294 0.046 1.295 sum 9.811 -5.870 7.010 13.410 Atomic orbital electron populations 1.70002 1.08036 1.28461 1.50343 1.25715 0.95278 1.02213 0.93134 0.86089 0.80028 0.79207 0.79944 1.19448 1.20799 1.15509 1.20414 0.87983 0.93428 1.51928 0.94887 1.18508 0.96047 0.94811 0.90608 0.90031 1.21015 0.77846 0.87505 0.81761 1.90557 1.38921 1.46323 1.70946 1.45877 1.51217 1.26585 1.13061 1.20833 0.99252 0.88587 0.90257 1.23411 0.98282 1.00574 0.94740 1.21832 0.98636 0.90430 1.00656 1.20331 0.95021 0.97111 0.99954 1.22144 0.98640 0.95515 0.93948 1.22405 1.00779 0.95668 1.00695 1.23245 0.88145 1.00376 0.95447 1.67626 1.30454 1.15331 1.08743 1.23288 0.97840 0.89561 0.95448 1.20101 0.94183 0.94634 0.96707 1.20800 0.99056 0.97838 0.94598 1.21345 0.98063 1.00151 0.95595 1.21348 0.98425 0.94954 1.00720 1.21374 1.00303 0.99253 0.93249 1.21251 0.98079 0.99541 0.98205 0.92034 0.75421 0.92163 0.90794 0.83042 0.82260 0.83798 0.82464 0.80540 0.81019 0.89665 0.84928 0.83196 0.83298 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.14 13.96 21.45 0.30 -53.84 16 2 C 0.04 1.98 5.47 84.66 0.46 2.45 16 3 Si 0.92 40.21 27.19 68.60 1.86 42.08 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.23 -8.85 6.06 99.48 0.60 -8.25 16 7 C -0.50 -26.64 8.06 25.60 0.21 -26.43 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 9 C 0.02 0.99 1.89 -13.03 -0.02 0.97 16 10 H 0.08 3.51 4.89 -2.39 -0.01 3.50 16 11 C 0.53 23.30 7.04 87.66 0.62 23.92 16 12 O -0.59 -28.15 15.37 -3.03 -0.05 -28.20 16 13 N -0.72 -25.87 5.45 -466.79 -2.54 -28.41 16 14 C 0.13 3.89 4.42 85.63 0.38 4.27 16 15 C -0.15 -3.24 9.58 24.53 0.24 -3.00 16 16 C -0.10 -1.91 9.82 23.65 0.23 -1.67 16 17 C -0.12 -2.93 5.19 -20.02 -0.10 -3.03 16 18 C -0.08 -1.84 7.44 22.72 0.17 -1.67 16 19 C -0.18 -3.92 10.10 22.32 0.23 -3.70 16 20 C 0.08 1.97 11.17 84.71 0.95 2.91 16 21 N -0.51 -14.07 10.35 -194.80 -2.02 -16.08 16 22 C 0.10 2.41 10.95 85.01 0.93 3.34 16 23 C -0.06 -2.48 4.09 -19.87 -0.08 -2.56 16 24 C -0.10 -4.72 8.25 22.27 0.18 -4.53 16 25 C -0.13 -4.93 10.05 22.27 0.22 -4.71 16 26 C -0.14 -4.32 10.05 22.27 0.22 -4.09 16 27 C -0.12 -4.01 10.05 22.27 0.22 -3.79 16 28 C -0.15 -5.89 9.46 22.27 0.21 -5.68 16 29 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.41 14.01 8.35 -92.71 -0.77 13.24 16 31 H 0.06 2.00 4.80 -2.39 -0.01 1.98 16 32 H 0.07 2.06 7.98 -2.39 -0.02 2.05 16 33 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.14 3.16 6.33 -2.91 -0.02 3.14 16 36 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 38 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 39 H 0.09 4.22 7.93 -2.91 -0.02 4.20 16 40 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 42 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.12 4.24 7.95 -2.91 -0.02 4.22 16 Total: -1.00 -71.91 364.71 2.97 -68.94 By element: Atomic # 1 Polarization: 42.37 SS G_CDS: 0.15 Total: 42.52 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 5.26 Total: -27.01 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -4.26 Total: -98.33 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.05 Total: -28.20 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 1.86 Total: 42.08 kcal Total: -71.91 2.97 -68.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413026511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.587 kcal (2) G-P(sol) polarization free energy of solvation -71.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds