Wall clock time and date at job start Tue Mar 31 2020 13:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00180 * 2 1 4 4 C 1.50699 * 109.47199 * 179.97438 * 3 2 1 5 5 N 1.31797 * 119.08843 * 269.73140 * 4 3 2 6 6 C 1.32508 * 120.98853 * 179.71573 * 5 4 3 7 7 C 1.38195 * 119.18838 * 0.54673 * 6 5 4 8 8 C 1.39512 * 118.33965 * 359.73477 * 7 6 5 9 9 N 1.39005 * 120.52710 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00358 * 174.91677 * 9 8 7 11 11 O 1.21574 * 119.99467 * 5.08155 * 10 9 8 12 12 N 1.34772 * 120.00172 * 185.08714 * 10 9 8 13 13 C 1.47422 * 125.64945 * 0.02562 * 12 10 9 14 14 C 1.54908 * 104.83488 * 204.09625 * 13 12 10 15 15 C 1.55162 * 101.57903 * 322.99084 * 14 13 12 16 16 O 1.42897 * 110.71880 * 277.13706 * 15 14 13 17 17 C 1.50704 * 110.71920 * 154.04521 * 15 14 13 18 18 H 1.07996 * 119.99787 * 359.97438 * 17 15 14 19 19 C 1.37871 * 119.99808 * 180.02562 * 17 15 14 20 20 N 1.31514 * 120.00305 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99900 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47518 * 59.99872 * 21 19 17 23 23 H 1.48502 * 109.47368 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47230 * 299.99779 * 21 19 17 25 25 C 1.47023 * 125.64973 * 179.71670 * 12 10 9 26 26 N 1.31745 * 119.08500 * 90.00303 * 4 3 2 27 27 H 1.08996 * 109.47268 * 59.99673 * 1 2 3 28 28 H 1.08999 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47056 * 299.99638 * 1 2 3 30 30 H 1.08996 * 109.47326 * 300.00405 * 3 2 1 31 31 H 1.09006 * 109.46875 * 60.00170 * 3 2 1 32 32 H 1.08001 * 120.40409 * 180.28457 * 6 5 4 33 33 H 1.08004 * 120.83290 * 179.70747 * 7 6 5 34 34 H 0.97001 * 119.99921 * 354.91474 * 9 8 7 35 35 H 1.09006 * 110.36870 * 322.93112 * 13 12 10 36 36 H 1.08997 * 110.36787 * 85.25223 * 13 12 10 37 37 H 1.09002 * 111.00559 * 81.06577 * 14 13 12 38 38 H 1.09000 * 111.00625 * 204.87765 * 14 13 12 39 39 H 0.96702 * 114.00227 * 180.02562 * 16 15 14 40 40 H 0.96995 * 120.00559 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.87952 * 298.39364 * 25 12 10 42 42 H 1.09002 * 109.88066 * 59.55660 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.1512 1.1414 1.1526 6 6 5.4710 1.0314 1.1972 7 6 6.1828 0.9748 0.0140 8 6 5.4760 1.0307 -1.1875 9 7 6.1463 0.9780 -2.4041 10 6 5.4488 0.9294 -3.5563 11 8 4.2369 1.0248 -3.5377 12 7 6.0946 0.7750 -4.7291 13 6 7.5538 0.6466 -4.8960 14 6 7.8294 1.1119 -6.3476 15 6 6.5897 0.5525 -7.0946 16 8 6.7816 -0.8224 -7.4335 17 6 6.2976 1.3679 -8.3279 18 1 6.9230 2.2122 -8.5777 19 6 5.2313 1.0366 -9.1367 20 7 4.4694 0.0087 -8.8322 21 14 4.8688 2.0476 -10.6650 22 1 6.0391 2.0021 -11.5778 23 1 3.6797 1.4892 -11.3574 24 1 4.5995 3.4550 -10.2751 25 6 5.4603 0.7003 -6.0533 26 7 4.1514 1.1357 -1.1504 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 5.9843 0.9907 2.1465 33 1 7.2595 0.8899 0.0193 34 1 7.1161 0.9762 -2.4239 35 1 8.0748 1.2894 -4.1863 36 1 7.8607 -0.3910 -4.7654 37 1 7.8647 2.1996 -6.4093 38 1 8.7493 0.6709 -6.7313 39 1 6.0351 -1.2197 -7.9026 40 1 3.7191 -0.2242 -9.4010 41 1 4.7966 -0.1632 -6.0982 42 1 4.8975 1.6135 -6.2468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001426000891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:58 Heat of formation + Delta-G solvation = -71.548347 kcal Electronic energy + Delta-G solvation = -27244.408314 eV Core-core repulsion = 23224.963719 eV Total energy + Delta-G solvation = -4019.444595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.42158 -41.18260 -39.30514 -38.76320 -36.52279 -36.16422 -34.25231 -34.17883 -32.85904 -31.48637 -29.65312 -29.22699 -27.26907 -26.85830 -25.43796 -24.16102 -23.65217 -21.57858 -21.36102 -19.71668 -19.10055 -18.80260 -18.07949 -17.67178 -17.26986 -16.97599 -16.61980 -16.48170 -16.46855 -16.15475 -15.97785 -15.71365 -14.96569 -14.89412 -14.78270 -14.65404 -13.98985 -13.66775 -13.49879 -13.39258 -13.30262 -12.84500 -12.74585 -12.56323 -12.40108 -12.34218 -12.29820 -12.11213 -11.82796 -11.47320 -11.21571 -11.19049 -10.78082 -10.65196 -10.35247 -10.08077 -9.99344 -9.50619 -8.28357 -6.44525 -0.22335 0.16928 1.20938 1.42876 1.43053 1.51109 1.96945 2.36051 2.39915 2.63318 2.90850 2.98305 3.24481 3.39302 3.67609 3.77394 4.03040 4.07523 4.13398 4.20581 4.28386 4.33358 4.45085 4.48967 4.52209 4.55029 4.57646 4.67448 4.80510 4.99702 5.04723 5.10803 5.16265 5.33266 5.44356 5.49385 5.64611 5.74428 6.01358 6.05152 6.16369 6.61812 6.78258 7.14401 7.27633 7.36525 7.42244 8.77614 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003162 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.029058 B = 8853.335151 C =10090.134994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.136 3.864 4 C 0.324 3.676 5 N -0.541 5.541 6 C 0.168 3.832 7 C -0.238 4.238 8 C 0.394 3.606 9 N -0.644 5.644 10 C 0.700 3.300 11 O -0.581 6.581 12 N -0.627 5.627 13 C 0.101 3.899 14 C -0.110 4.110 15 C 0.234 3.766 16 O -0.589 6.589 17 C -0.558 4.558 18 H 0.070 0.930 19 C 0.025 3.975 20 N -0.918 5.918 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.139 3.861 26 N -0.543 5.543 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.223 0.777 33 H 0.199 0.801 34 H 0.435 0.565 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.378 0.622 40 H 0.271 0.729 41 H 0.025 0.975 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 2.847 19.759 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.331 6.331 3 C 0.058 3.942 4 C 0.054 3.946 5 N -0.259 5.259 6 C 0.005 3.995 7 C -0.263 4.263 8 C 0.154 3.846 9 N -0.296 5.296 10 C 0.401 3.599 11 O -0.455 6.455 12 N -0.365 5.365 13 C -0.020 4.020 14 C -0.148 4.148 15 C 0.193 3.807 16 O -0.398 6.398 17 C -0.596 4.596 18 H 0.089 0.911 19 C -0.176 4.176 20 N -0.558 5.558 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.198 1.198 25 C 0.015 3.985 26 N -0.265 5.265 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.240 0.760 33 H 0.216 0.784 34 H 0.276 0.724 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.229 0.771 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.608 2.809 19.918 20.436 hybrid contribution -0.252 0.280 -1.741 1.781 sum 3.356 3.089 18.177 18.741 Atomic orbital electron populations 1.22980 0.78275 1.04147 1.01341 1.87863 1.22445 1.27107 1.95706 1.20991 0.84718 0.85843 1.02682 1.22808 0.97349 0.91491 0.82903 1.68241 1.12001 1.16798 1.28909 1.23866 0.88208 0.87548 0.99909 1.22728 1.04791 1.08385 0.90419 1.18889 0.88727 0.90629 0.86323 1.42500 1.10848 1.74482 1.01749 1.15823 0.84905 0.78902 0.80278 1.91007 1.13282 1.55920 1.85340 1.47967 1.09475 1.74386 1.04640 1.22552 0.78738 1.02132 0.98561 1.22734 0.98167 1.00919 0.92956 1.19714 0.90202 0.80434 0.90316 1.86055 1.47303 1.26886 1.79568 1.21843 1.13708 1.14970 1.09067 0.91144 1.25835 0.94957 0.95972 1.00822 1.69674 1.18247 1.28092 1.39773 0.85511 0.77731 0.78747 0.79088 1.19070 1.21081 1.19846 1.22471 0.97402 0.98288 0.80324 1.68132 1.09519 1.17429 1.31445 0.93697 0.88360 0.91427 0.91694 0.88056 0.76046 0.78428 0.72351 0.87211 0.90625 0.89607 0.88802 0.77111 0.91961 0.95686 0.94987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -12.54 10.69 -148.98 -1.59 -14.13 16 3 C 0.14 3.85 6.37 71.24 0.45 4.31 16 4 C 0.32 10.31 7.27 138.76 1.01 11.32 16 5 N -0.54 -13.87 10.33 -188.07 -1.94 -15.81 16 6 C 0.17 2.87 11.29 84.58 0.95 3.82 16 7 C -0.24 -4.13 10.04 22.57 0.23 -3.91 16 8 C 0.39 11.52 7.45 133.00 0.99 12.52 16 9 N -0.64 -18.47 5.34 -321.76 -1.72 -20.19 16 10 C 0.70 28.58 8.45 179.06 1.51 30.09 16 11 O -0.58 -29.85 14.98 -3.95 -0.06 -29.90 16 12 N -0.63 -25.16 3.33 -829.77 -2.76 -27.92 16 13 C 0.10 3.02 6.61 86.86 0.57 3.60 16 14 C -0.11 -3.93 6.23 31.99 0.20 -3.73 16 15 C 0.23 11.14 0.86 -10.35 -0.01 11.13 16 16 O -0.59 -29.66 13.07 -148.98 -1.95 -31.61 16 17 C -0.56 -28.89 8.12 25.60 0.21 -28.68 16 18 H 0.07 3.51 7.76 -2.91 -0.02 3.48 16 19 C 0.02 1.30 5.28 84.65 0.45 1.75 16 20 N -0.92 -50.30 10.97 21.45 0.24 -50.06 16 21 Si 0.96 41.96 29.54 68.60 2.03 43.98 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C 0.14 6.93 5.54 86.73 0.48 7.41 16 26 N -0.54 -20.13 7.94 -185.21 -1.47 -21.60 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.22 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.43 8.00 7.17 -92.71 -0.66 7.33 16 35 H 0.11 2.13 7.22 -2.38 -0.02 2.11 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.09 2.91 8.03 -2.39 -0.02 2.89 16 38 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.38 20.26 6.98 -74.06 -0.52 19.75 16 40 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.02 1.41 8.07 -2.39 -0.02 1.39 16 42 H 0.03 1.77 7.82 -2.39 -0.02 1.75 16 Total: -1.00 -80.01 356.49 -1.04 -81.05 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.11 Total: 34.74 kcal Atomic # 6 Polarization: 43.15 SS G_CDS: 8.30 Total: 51.45 kcal Atomic # 7 Polarization: -127.93 SS G_CDS: -7.66 Total: -135.58 kcal Atomic # 8 Polarization: -72.05 SS G_CDS: -3.60 Total: -75.64 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -80.01 -1.04 -81.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426000891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.505 kcal (2) G-P(sol) polarization free energy of solvation -80.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds