Wall clock time and date at job start Tue Mar 31 2020 13:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 113.99790 * 2 1 4 4 C 1.50703 * 109.47085 * 180.02562 * 3 2 1 5 5 N 1.31794 * 119.08666 * 269.73321 * 4 3 2 6 6 C 1.32504 * 120.98837 * 179.71653 * 5 4 3 7 7 C 1.38201 * 119.18953 * 0.54018 * 6 5 4 8 8 C 1.39508 * 118.33546 * 359.73904 * 7 6 5 9 9 N 1.39014 * 120.52192 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99603 * 174.92943 * 9 8 7 11 11 O 1.21572 * 120.00630 * 5.09220 * 10 9 8 12 12 N 1.34779 * 119.99644 * 185.09190 * 10 9 8 13 13 C 1.47427 * 125.64894 * 359.68820 * 12 10 9 14 14 C 1.55135 * 104.72232 * 155.81853 * 13 12 10 15 15 C 1.55161 * 101.48247 * 37.29971 * 14 13 12 16 16 O 1.42895 * 110.72124 * 82.69695 * 15 14 13 17 17 C 1.50701 * 110.87009 * 205.89840 * 15 14 13 18 18 H 1.08002 * 120.00120 * 355.06678 * 17 15 14 19 19 C 1.37874 * 119.99990 * 175.05995 * 17 15 14 20 20 N 1.31514 * 120.00285 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99987 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46851 * 60.00543 * 21 19 17 23 23 H 1.48509 * 109.47267 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47711 * 300.00471 * 21 19 17 25 25 C 1.47023 * 125.64693 * 180.02562 * 12 10 9 26 26 N 1.31747 * 119.08408 * 89.99614 * 4 3 2 27 27 H 1.09003 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47093 * 299.99784 * 1 2 3 29 29 H 1.08999 * 109.47522 * 59.99900 * 1 2 3 30 30 H 1.08999 * 109.47430 * 299.99742 * 3 2 1 31 31 H 1.09000 * 109.47260 * 60.00338 * 3 2 1 32 32 H 1.08007 * 120.40455 * 180.25232 * 6 5 4 33 33 H 1.07998 * 120.83500 * 179.75221 * 7 6 5 34 34 H 0.97003 * 120.00094 * 354.92951 * 9 8 7 35 35 H 1.09001 * 110.36862 * 274.74709 * 13 12 10 36 36 H 1.08997 * 110.36658 * 37.07579 * 13 12 10 37 37 H 1.09001 * 111.19470 * 279.19574 * 14 13 12 38 38 H 1.08995 * 110.90554 * 155.27572 * 14 13 12 39 39 H 0.96702 * 113.99929 * 185.02764 * 16 15 14 40 40 H 0.97001 * 120.00562 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.88203 * 300.43293 * 25 12 10 42 42 H 1.09001 * 109.88436 * 61.44712 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.1521 1.1410 1.1508 6 6 5.4718 1.0311 1.1943 7 6 6.1828 0.9749 0.0105 8 6 5.4750 1.0312 -1.1904 9 7 6.1443 0.9778 -2.4076 10 6 5.4457 0.9299 -3.5591 11 8 4.2340 1.0266 -3.5396 12 7 6.0905 0.7747 -4.7325 13 6 7.5499 0.6518 -4.9012 14 6 7.7293 -0.1036 -6.2443 15 6 6.5794 0.4995 -7.0938 16 8 6.9748 1.7474 -7.6667 17 6 6.1432 -0.4637 -8.1676 18 1 6.6771 -1.3916 -8.3101 19 6 5.0624 -0.1603 -8.9682 20 7 4.4125 0.9699 -8.7950 21 14 4.5222 -1.3538 -10.2998 22 1 4.1566 -2.6533 -9.6810 23 1 3.3459 -0.7975 -11.0156 24 1 5.6347 -1.5591 -11.2617 25 6 5.4554 0.7070 -6.0567 26 7 4.1504 1.1360 -1.1523 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 5.9860 0.9906 2.1432 33 1 7.2594 0.8893 0.0149 34 1 7.1141 0.9750 -2.4281 35 1 8.0102 1.6385 -4.9538 36 1 7.9793 0.0751 -4.0820 37 1 7.5965 -1.1775 -6.1133 38 1 8.7000 0.1172 -6.6881 39 1 6.2676 2.2029 -8.1436 40 1 3.6524 1.1835 -9.3585 41 1 4.7596 -0.1314 -6.0917 42 1 4.9255 1.6372 -6.2618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001426000894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:01 Heat of formation + Delta-G solvation = -44.914146 kcal Electronic energy + Delta-G solvation = -27270.060313 eV Core-core repulsion = 23251.770663 eV Total energy + Delta-G solvation = -4018.289650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30081 -39.73174 -37.90334 -37.51149 -35.17730 -34.37969 -33.19502 -32.26047 -31.65350 -29.92496 -28.29937 -27.85995 -25.95277 -25.51047 -24.12649 -22.86231 -22.44259 -20.15532 -19.65815 -18.39609 -17.49022 -17.20878 -16.88811 -16.64203 -15.74420 -15.65044 -15.49960 -15.47583 -15.10007 -14.62832 -14.43468 -14.37411 -13.96630 -13.44133 -12.99716 -12.90639 -12.72316 -12.41723 -12.35149 -11.83383 -11.66929 -11.52975 -11.27018 -11.06165 -10.88912 -10.81998 -10.75510 -10.53198 -10.22802 -10.10121 -9.96237 -9.80240 -9.37734 -8.92790 -8.80562 -8.70506 -8.37713 -7.91776 -6.31002 -4.39977 0.78013 1.16835 2.52769 3.21877 3.24492 3.27681 3.29388 3.58796 3.83813 3.99308 4.23227 4.28098 4.39091 4.61749 4.93823 4.96669 5.06161 5.14351 5.23708 5.26100 5.30592 5.42019 5.47391 5.57178 5.58253 5.69127 5.88507 5.98177 6.01412 6.41879 6.49812 6.60842 6.74351 6.81235 6.91984 6.98794 7.17549 7.24559 7.43703 7.70094 7.97970 8.11370 8.30947 8.63028 8.90500 9.25012 9.34516 10.76847 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.003264 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.579852 B = 8575.346627 C = 9972.420508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.136 3.864 4 C 0.348 3.652 5 N -0.537 5.537 6 C 0.169 3.831 7 C -0.269 4.269 8 C 0.431 3.569 9 N -0.663 5.663 10 C 0.701 3.299 11 O -0.526 6.526 12 N -0.625 5.625 13 C 0.097 3.903 14 C -0.115 4.115 15 C 0.249 3.751 16 O -0.585 6.585 17 C -0.540 4.540 18 H 0.066 0.934 19 C 0.072 3.928 20 N -0.893 5.893 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.123 3.877 26 N -0.491 5.491 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.171 0.829 33 H 0.148 0.852 34 H 0.414 0.586 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.383 0.617 40 H 0.271 0.729 41 H 0.067 0.933 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 1.143 17.481 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C 0.057 3.943 4 C 0.078 3.922 5 N -0.255 5.255 6 C 0.005 3.995 7 C -0.296 4.296 8 C 0.189 3.811 9 N -0.312 5.312 10 C 0.402 3.598 11 O -0.397 6.397 12 N -0.363 5.363 13 C -0.026 4.026 14 C -0.153 4.153 15 C 0.209 3.791 16 O -0.394 6.394 17 C -0.578 4.578 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.532 5.532 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C 0.001 3.999 26 N -0.212 5.212 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.188 0.812 33 H 0.166 0.834 34 H 0.251 0.749 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.233 0.767 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.908 1.067 17.553 17.609 hybrid contribution 0.500 -0.324 -1.030 1.189 sum 1.407 0.743 16.524 16.600 Atomic orbital electron populations 1.22765 0.80204 1.03031 1.00203 1.87919 1.20168 1.26306 1.95507 1.20927 0.85036 0.86057 1.02258 1.22572 0.96580 0.90270 0.82766 1.68177 1.10107 1.17145 1.30093 1.22916 0.89261 0.89502 0.97859 1.22244 1.02591 1.12082 0.92715 1.18407 0.88814 0.88636 0.85232 1.42950 1.10169 1.74809 1.03246 1.15630 0.85344 0.79588 0.79267 1.91044 1.10690 1.53690 1.84282 1.48110 1.07897 1.74344 1.05915 1.22390 0.81363 1.00049 0.98812 1.22760 1.00373 0.99129 0.93019 1.19499 0.87548 0.83065 0.89033 1.86102 1.42970 1.36332 1.73967 1.21435 1.14367 1.05166 1.16824 0.91540 1.25067 0.95421 0.95511 0.97187 1.69677 1.20907 1.22916 1.39658 0.86451 0.78115 0.80980 0.81317 1.19995 1.21041 1.19988 1.22976 0.97514 1.02027 0.77384 1.68287 1.07319 1.15997 1.29621 0.89407 0.93913 0.93534 0.90179 0.90595 0.81157 0.83429 0.74873 0.91607 0.92528 0.90338 0.90416 0.76676 0.91866 0.91458 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.63 10.69 -35.23 -0.38 -6.01 16 3 C 0.14 1.87 6.37 36.01 0.23 2.10 16 4 C 0.35 5.53 7.27 -157.23 -1.14 4.39 16 5 N -0.54 -7.41 10.33 -10.79 -0.11 -7.52 16 6 C 0.17 1.79 11.29 -17.28 -0.20 1.59 16 7 C -0.27 -2.91 10.04 -39.12 -0.39 -3.31 16 8 C 0.43 6.64 7.45 -154.42 -1.15 5.48 16 9 N -0.66 -10.09 5.33 -15.67 -0.08 -10.17 16 10 C 0.70 14.17 8.45 -86.92 -0.73 13.44 16 11 O -0.53 -12.86 14.98 5.30 0.08 -12.78 16 12 N -0.62 -12.52 3.32 -176.09 -0.59 -13.10 16 13 C 0.10 1.57 6.54 -2.41 -0.02 1.56 16 14 C -0.11 -2.16 6.24 -24.46 -0.15 -2.32 16 15 C 0.25 5.84 0.85 -89.93 -0.08 5.76 16 16 O -0.58 -14.22 13.07 -35.23 -0.46 -14.69 16 17 C -0.54 -13.85 8.13 -34.44 -0.28 -14.13 16 18 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 19 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 20 N -0.89 -23.56 10.96 55.43 0.61 -22.95 16 21 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C 0.12 2.92 5.23 -3.06 -0.02 2.90 16 26 N -0.49 -8.96 7.94 -9.89 -0.08 -9.04 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.41 4.61 7.26 -40.82 -0.30 4.31 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.70 7.37 -51.93 -0.38 0.32 16 37 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.38 9.60 7.45 45.56 0.34 9.94 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.07 1.78 7.81 -51.93 -0.41 1.37 16 42 H 0.07 1.72 7.92 -51.93 -0.41 1.31 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -33.60 356.70 -8.49 -42.09 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -4.92 Total: 12.82 kcal Atomic # 6 Polarization: 23.60 SS G_CDS: -2.91 Total: 20.69 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.25 Total: -62.79 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.76 Total: -33.48 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.60 -8.49 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426000894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.822 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds