Wall clock time and date at job start Tue Mar 31 2020 13:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 113.99790 * 2 1 4 4 C 1.50703 * 109.47085 * 180.02562 * 3 2 1 5 5 N 1.31794 * 119.08666 * 269.73321 * 4 3 2 6 6 C 1.32504 * 120.98837 * 179.71653 * 5 4 3 7 7 C 1.38201 * 119.18953 * 0.54018 * 6 5 4 8 8 C 1.39508 * 118.33546 * 359.73904 * 7 6 5 9 9 N 1.39014 * 120.52192 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99603 * 174.92943 * 9 8 7 11 11 O 1.21572 * 120.00630 * 5.09220 * 10 9 8 12 12 N 1.34779 * 119.99644 * 185.09190 * 10 9 8 13 13 C 1.47427 * 125.64894 * 359.68820 * 12 10 9 14 14 C 1.55135 * 104.72232 * 155.81853 * 13 12 10 15 15 C 1.55161 * 101.48247 * 37.29971 * 14 13 12 16 16 O 1.42895 * 110.72124 * 82.69695 * 15 14 13 17 17 C 1.50701 * 110.87009 * 205.89840 * 15 14 13 18 18 H 1.08002 * 120.00120 * 355.06678 * 17 15 14 19 19 C 1.37874 * 119.99990 * 175.05995 * 17 15 14 20 20 N 1.31514 * 120.00285 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99987 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46851 * 60.00543 * 21 19 17 23 23 H 1.48509 * 109.47267 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47711 * 300.00471 * 21 19 17 25 25 C 1.47023 * 125.64693 * 180.02562 * 12 10 9 26 26 N 1.31747 * 119.08408 * 89.99614 * 4 3 2 27 27 H 1.09003 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47093 * 299.99784 * 1 2 3 29 29 H 1.08999 * 109.47522 * 59.99900 * 1 2 3 30 30 H 1.08999 * 109.47430 * 299.99742 * 3 2 1 31 31 H 1.09000 * 109.47260 * 60.00338 * 3 2 1 32 32 H 1.08007 * 120.40455 * 180.25232 * 6 5 4 33 33 H 1.07998 * 120.83500 * 179.75221 * 7 6 5 34 34 H 0.97003 * 120.00094 * 354.92951 * 9 8 7 35 35 H 1.09001 * 110.36862 * 274.74709 * 13 12 10 36 36 H 1.08997 * 110.36658 * 37.07579 * 13 12 10 37 37 H 1.09001 * 111.19470 * 279.19574 * 14 13 12 38 38 H 1.08995 * 110.90554 * 155.27572 * 14 13 12 39 39 H 0.96702 * 113.99929 * 185.02764 * 16 15 14 40 40 H 0.97001 * 120.00562 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.88203 * 300.43293 * 25 12 10 42 42 H 1.09001 * 109.88436 * 61.44712 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.1521 1.1410 1.1508 6 6 5.4718 1.0311 1.1943 7 6 6.1828 0.9749 0.0105 8 6 5.4750 1.0312 -1.1904 9 7 6.1443 0.9778 -2.4076 10 6 5.4457 0.9299 -3.5591 11 8 4.2340 1.0266 -3.5396 12 7 6.0905 0.7747 -4.7325 13 6 7.5499 0.6518 -4.9012 14 6 7.7293 -0.1036 -6.2443 15 6 6.5794 0.4995 -7.0938 16 8 6.9748 1.7474 -7.6667 17 6 6.1432 -0.4637 -8.1676 18 1 6.6771 -1.3916 -8.3101 19 6 5.0624 -0.1603 -8.9682 20 7 4.4125 0.9699 -8.7950 21 14 4.5222 -1.3538 -10.2998 22 1 4.1566 -2.6533 -9.6810 23 1 3.3459 -0.7975 -11.0156 24 1 5.6347 -1.5591 -11.2617 25 6 5.4554 0.7070 -6.0567 26 7 4.1504 1.1360 -1.1523 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 5.9860 0.9906 2.1432 33 1 7.2594 0.8893 0.0149 34 1 7.1141 0.9750 -2.4281 35 1 8.0102 1.6385 -4.9538 36 1 7.9793 0.0751 -4.0820 37 1 7.5965 -1.1775 -6.1133 38 1 8.7000 0.1172 -6.6881 39 1 6.2676 2.2029 -8.1436 40 1 3.6524 1.1835 -9.3585 41 1 4.7596 -0.1314 -6.0917 42 1 4.9255 1.6372 -6.2618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001426000894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:01 Heat of formation + Delta-G solvation = -71.609722 kcal Electronic energy + Delta-G solvation = -27271.217920 eV Core-core repulsion = 23251.770663 eV Total energy + Delta-G solvation = -4019.447257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.41924 -41.17874 -39.30598 -38.76274 -36.51751 -36.13393 -34.25165 -34.23738 -32.85141 -31.47453 -29.61445 -29.22537 -27.26236 -26.85810 -25.43699 -24.16639 -23.65097 -21.58131 -21.37248 -19.70165 -19.05667 -18.78870 -18.08842 -17.65852 -17.33582 -16.91883 -16.60169 -16.48701 -16.46224 -16.20018 -15.96975 -15.72047 -14.98234 -14.89168 -14.78052 -14.63826 -13.95530 -13.66177 -13.52790 -13.38873 -13.30458 -12.83772 -12.74595 -12.55612 -12.40279 -12.33808 -12.33043 -12.10754 -11.82503 -11.46846 -11.19214 -11.18212 -10.78129 -10.66665 -10.34336 -10.07844 -9.99021 -9.50021 -8.27635 -6.43504 -0.22211 0.17104 1.21696 1.42323 1.42695 1.50432 1.97269 2.35738 2.40648 2.63586 2.91063 2.99437 3.24674 3.39395 3.67930 3.76588 4.00718 4.06915 4.14077 4.20656 4.28636 4.33994 4.45071 4.48979 4.52256 4.54980 4.57317 4.68288 4.80427 5.02506 5.04895 5.10605 5.16290 5.32436 5.45187 5.49667 5.65649 5.73414 6.03284 6.05572 6.16929 6.62631 6.78756 7.14711 7.25872 7.33640 7.42813 8.78184 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.003264 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.579852 B = 8575.346627 C = 9972.420508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.136 3.864 4 C 0.324 3.676 5 N -0.541 5.541 6 C 0.168 3.832 7 C -0.237 4.237 8 C 0.394 3.606 9 N -0.644 5.644 10 C 0.699 3.301 11 O -0.581 6.581 12 N -0.628 5.628 13 C 0.101 3.899 14 C -0.110 4.110 15 C 0.234 3.766 16 O -0.585 6.585 17 C -0.559 4.559 18 H 0.068 0.932 19 C 0.026 3.974 20 N -0.916 5.916 21 Si 0.961 3.039 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.143 3.857 26 N -0.543 5.543 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.223 0.777 33 H 0.199 0.801 34 H 0.435 0.565 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.375 0.625 40 H 0.270 0.730 41 H 0.028 0.972 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 0.414 19.925 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.331 6.331 3 C 0.058 3.942 4 C 0.054 3.946 5 N -0.259 5.259 6 C 0.005 3.995 7 C -0.263 4.263 8 C 0.154 3.846 9 N -0.296 5.296 10 C 0.401 3.599 11 O -0.456 6.456 12 N -0.366 5.366 13 C -0.021 4.021 14 C -0.148 4.148 15 C 0.194 3.806 16 O -0.393 6.393 17 C -0.597 4.597 18 H 0.086 0.914 19 C -0.175 4.175 20 N -0.555 5.555 21 Si 0.787 3.213 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 C 0.019 3.981 26 N -0.265 5.265 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.240 0.760 33 H 0.216 0.784 34 H 0.277 0.723 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.224 0.776 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.641 0.334 20.053 20.383 hybrid contribution -0.318 -0.093 -1.673 1.705 sum 3.323 0.241 18.380 18.680 Atomic orbital electron populations 1.22981 0.78282 1.04153 1.01333 1.87862 1.22436 1.27084 1.95704 1.20988 0.84734 0.85850 1.02659 1.22805 0.97344 0.91499 0.82905 1.68239 1.11979 1.16794 1.28937 1.23869 0.88216 0.87549 0.99903 1.22728 1.04783 1.08383 0.90416 1.18892 0.88725 0.90629 0.86325 1.42504 1.10840 1.74479 1.01755 1.15827 0.84913 0.78909 0.80281 1.91008 1.13333 1.55870 1.85339 1.48004 1.09451 1.74469 1.04672 1.22607 0.78907 1.01342 0.99195 1.22758 0.99123 0.99453 0.93420 1.19706 0.89524 0.82511 0.88883 1.86090 1.42585 1.36724 1.73916 1.21819 1.14578 1.05742 1.17571 0.91352 1.25807 0.95603 0.96894 0.99178 1.69795 1.21109 1.24241 1.40308 0.85553 0.77778 0.78963 0.79032 1.19919 1.21070 1.19088 1.22411 0.97164 0.98361 0.80143 1.68135 1.09564 1.17422 1.31410 0.88338 0.91441 0.93709 0.91743 0.88059 0.76041 0.78412 0.72348 0.90268 0.87377 0.89796 0.88747 0.77590 0.92117 0.95332 0.95288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -12.52 10.69 -148.98 -1.59 -14.11 16 3 C 0.14 3.87 6.37 71.24 0.45 4.32 16 4 C 0.32 10.33 7.27 138.77 1.01 11.33 16 5 N -0.54 -13.88 10.33 -188.06 -1.94 -15.82 16 6 C 0.17 2.86 11.29 84.58 0.96 3.82 16 7 C -0.24 -4.12 10.04 22.57 0.23 -3.90 16 8 C 0.39 11.53 7.45 132.99 0.99 12.52 16 9 N -0.64 -18.49 5.33 -321.75 -1.72 -20.21 16 10 C 0.70 28.62 8.45 179.05 1.51 30.13 16 11 O -0.58 -29.95 14.98 -3.94 -0.06 -30.01 16 12 N -0.63 -25.21 3.32 -829.29 -2.76 -27.97 16 13 C 0.10 2.99 6.54 86.93 0.57 3.56 16 14 C -0.11 -3.93 6.24 32.07 0.20 -3.73 16 15 C 0.23 11.11 0.85 -10.35 -0.01 11.10 16 16 O -0.59 -28.90 13.07 -148.98 -1.95 -30.85 16 17 C -0.56 -29.12 8.13 25.60 0.21 -28.91 16 18 H 0.07 3.44 7.78 -2.91 -0.02 3.42 16 19 C 0.03 1.38 5.28 84.65 0.45 1.83 16 20 N -0.92 -50.27 10.96 21.45 0.24 -50.04 16 21 Si 0.96 42.28 29.54 68.60 2.03 44.31 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 C 0.14 7.13 5.23 86.73 0.45 7.58 16 26 N -0.54 -20.17 7.94 -185.20 -1.47 -21.64 16 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.22 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.43 8.03 7.26 -92.71 -0.67 7.36 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.11 2.14 7.37 -2.39 -0.02 2.12 16 37 H 0.08 2.90 8.04 -2.39 -0.02 2.88 16 38 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.38 19.56 7.45 -74.06 -0.55 19.00 16 40 H 0.27 14.29 8.31 -92.71 -0.77 13.51 16 41 H 0.03 1.60 7.81 -2.39 -0.02 1.58 16 42 H 0.03 1.62 7.92 -2.39 -0.02 1.60 16 Total: -1.00 -80.11 356.70 -1.11 -81.22 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.15 Total: 33.62 kcal Atomic # 6 Polarization: 43.22 SS G_CDS: 8.26 Total: 51.49 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -7.65 Total: -135.67 kcal Atomic # 8 Polarization: -71.37 SS G_CDS: -3.60 Total: -74.97 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -80.11 -1.11 -81.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426000894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.609 kcal (2) G-P(sol) polarization free energy of solvation -80.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds