Wall clock time and date at job start Tue Mar 31 2020 13:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00025 * 2 1 4 4 H 1.48501 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47410 * 300.00576 * 3 2 1 6 6 H 1.48507 * 109.46572 * 60.00595 * 3 2 1 7 7 C 1.37871 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99894 * 186.39287 * 7 2 1 9 9 C 1.50699 * 120.00252 * 6.39034 * 7 2 1 10 10 H 1.08995 * 109.47150 * 333.93845 * 9 7 2 11 11 C 1.50707 * 109.46939 * 213.93884 * 9 7 2 12 12 O 1.21281 * 119.99947 * 239.99842 * 11 9 7 13 13 N 1.34773 * 119.99892 * 59.99981 * 11 9 7 14 14 C 1.46505 * 120.00190 * 179.97438 * 13 11 9 15 15 H 1.08998 * 115.55380 * 350.69053 * 14 13 11 16 16 C 1.53071 * 117.49520 * 136.39705 * 14 13 11 17 17 C 1.52994 * 117.50097 * 205.00110 * 14 13 11 18 18 H 1.09006 * 117.49916 * 0.02721 * 17 14 13 19 19 C 1.50693 * 117.50027 * 145.01831 * 17 14 13 20 20 C 1.38669 * 120.42361 * 239.93446 * 19 17 14 21 21 C 1.38630 * 118.42334 * 179.97438 * 20 19 17 22 22 C 1.38222 * 119.16124 * 0.02562 * 21 20 19 23 23 N 1.31850 * 120.76249 * 359.71998 * 22 21 20 24 24 C 1.31884 * 121.72643 * 0.57350 * 23 22 21 25 25 C 1.50695 * 109.47237 * 93.94262 * 9 7 2 26 26 C 1.38235 * 120.00257 * 53.84331 * 25 9 7 27 27 C 1.38244 * 120.00070 * 179.78846 * 26 25 9 28 28 C 1.38231 * 119.99521 * 0.44533 * 27 26 25 29 29 C 1.38239 * 120.00538 * 359.80947 * 28 27 26 30 30 C 1.38234 * 119.99494 * 359.97438 * 29 28 27 31 31 H 0.97005 * 119.99983 * 359.97438 * 1 2 3 32 32 H 0.97004 * 120.00144 * 0.02562 * 13 11 9 33 33 H 1.09006 * 117.49154 * 0.02562 * 16 14 13 34 34 H 1.08997 * 117.53516 * 214.95408 * 16 14 13 35 35 H 1.08007 * 120.78710 * 359.96159 * 20 19 17 36 36 H 1.08009 * 120.41896 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.61697 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.61958 * 179.71054 * 24 23 22 39 39 H 1.08002 * 119.99999 * 0.02562 * 26 25 9 40 40 H 1.07999 * 119.99752 * 180.27936 * 27 26 25 41 41 H 1.08001 * 119.99832 * 179.83082 * 28 27 26 42 42 H 1.07997 * 120.00086 * 180.02562 * 29 28 27 43 43 H 1.07997 * 119.99535 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3963 1.2127 7 6 2.0045 -1.1940 -0.0005 8 1 3.0795 -1.1970 0.1036 9 6 1.2580 -2.4950 -0.1464 10 1 0.2375 -2.3710 0.2160 11 6 1.9504 -3.5644 0.6587 12 8 2.3790 -4.5562 0.1078 13 7 2.0934 -3.4186 1.9909 14 6 2.7660 -4.4584 2.7737 15 1 2.9808 -5.3840 2.2396 16 6 3.7713 -4.0047 3.8350 17 6 2.4120 -4.5651 4.2583 18 1 1.6783 -3.8620 4.6526 19 6 2.3870 -5.9419 4.8704 20 6 1.2230 -6.4365 5.4391 21 6 1.2465 -7.7084 5.9899 22 6 2.4212 -8.4361 5.9547 23 7 3.5081 -7.9356 5.4011 24 6 3.5239 -6.7274 4.8726 25 6 1.2301 -2.8982 -1.5981 26 6 2.4099 -2.9906 -2.3126 27 6 2.3847 -3.3647 -3.6432 28 6 1.1789 -3.6374 -4.2617 29 6 -0.0014 -3.5399 -3.5486 30 6 0.0243 -3.1702 -2.2169 31 1 -0.4850 0.8401 0.0004 32 1 1.7503 -2.6255 2.4316 33 1 3.9316 -2.9327 3.9508 34 1 4.6476 -4.6317 3.9998 35 1 0.3196 -5.8447 5.4527 36 1 0.3581 -8.1256 6.4408 37 1 2.4476 -9.4279 6.3813 38 1 4.4346 -6.3493 4.4320 39 1 3.3517 -2.7742 -1.8303 40 1 3.3068 -3.4412 -4.2002 41 1 1.1589 -3.9270 -5.3019 42 1 -0.9434 -3.7534 -4.0317 43 1 -0.8978 -3.0936 -1.6599 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433938327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:33 Heat of formation + Delta-G solvation = 42.555945 kcal Electronic energy + Delta-G solvation = -25697.645752 eV Core-core repulsion = 22093.998353 eV Total energy + Delta-G solvation = -3603.647399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47215 -39.25630 -38.04993 -36.86625 -33.71003 -32.89276 -32.24545 -31.13670 -30.39616 -29.96743 -27.37847 -24.54637 -24.11605 -23.54641 -22.12887 -21.61002 -20.90090 -20.54730 -19.42420 -17.43604 -16.82373 -16.60697 -16.20790 -15.95356 -15.57499 -15.11264 -14.57511 -14.29260 -14.17129 -14.05445 -13.90914 -13.55630 -13.16505 -13.10451 -12.55464 -12.50494 -12.35519 -12.10027 -11.76927 -11.68151 -11.67069 -11.24132 -11.11738 -11.03708 -10.65182 -10.43035 -10.30851 -10.04449 -9.84137 -9.55692 -9.48920 -9.08304 -8.85016 -8.65525 -8.13538 -7.97727 -7.65589 -6.33662 -4.38939 0.95556 1.15625 2.34134 2.36903 3.14954 3.24589 3.27490 3.41682 3.61923 3.81239 4.12586 4.25312 4.32453 4.66686 4.70350 4.78489 4.80594 4.89384 4.92954 5.03925 5.08762 5.19864 5.41281 5.62050 5.69759 5.74640 5.78759 5.85235 5.89750 5.95467 6.06016 6.18002 6.20840 6.35629 6.47158 6.55993 6.56829 6.83038 6.93715 7.08973 7.16334 7.34070 7.41159 7.57947 7.71054 7.85088 7.91288 8.02546 8.27327 8.65766 9.14319 9.27400 10.74958 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012275 B = 0.003389 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.530552 B = 8259.365137 C = 9604.313932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.076 3.924 3 Si 0.897 3.103 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.064 0.936 9 C 0.049 3.951 10 H 0.093 0.907 11 C 0.532 3.468 12 O -0.563 6.563 13 N -0.701 5.701 14 C 0.112 3.888 15 H 0.134 0.866 16 C -0.187 4.187 17 C -0.136 4.136 18 H 0.118 0.882 19 C -0.090 4.090 20 C -0.071 4.071 21 C -0.170 4.170 22 C 0.085 3.915 23 N -0.482 5.482 24 C 0.096 3.904 25 C -0.013 4.013 26 C -0.084 4.084 27 C -0.134 4.134 28 C -0.148 4.148 29 C -0.132 4.132 30 C -0.120 4.120 31 H 0.267 0.733 32 H 0.408 0.592 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 -8.484 8.701 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.129 4.129 3 Si 0.724 3.276 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.028 3.972 10 H 0.111 0.889 11 C 0.323 3.677 12 O -0.442 6.442 13 N -0.351 5.351 14 C 0.004 3.996 15 H 0.151 0.849 16 C -0.226 4.226 17 C -0.156 4.156 18 H 0.136 0.864 19 C -0.092 4.092 20 C -0.097 4.097 21 C -0.190 4.190 22 C -0.072 4.072 23 N -0.190 5.190 24 C -0.061 4.061 25 C -0.014 4.014 26 C -0.103 4.103 27 C -0.152 4.152 28 C -0.166 4.166 29 C -0.150 4.150 30 C -0.138 4.138 31 H 0.077 0.923 32 H 0.244 0.756 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.994 -9.560 8.250 12.784 hybrid contribution -0.639 1.958 0.255 2.075 sum 1.354 -7.602 8.505 11.487 Atomic orbital electron populations 1.69887 1.06037 1.27431 1.48115 1.24954 0.94883 0.99488 0.93609 0.86450 0.80313 0.82994 0.77857 1.19429 1.20655 1.20792 1.20717 0.93543 0.88570 1.52490 0.91818 1.18141 0.99785 0.91674 0.87568 0.88914 1.21717 0.77611 0.87128 0.81253 1.90587 1.50728 1.32116 1.70725 1.45411 1.59707 1.21968 1.07966 1.21623 0.97226 0.94885 0.85829 0.84878 1.23634 0.92561 1.02377 1.04021 1.21513 1.00929 0.94376 0.98789 0.86373 1.20138 0.94608 0.95853 0.98647 1.21461 0.97891 0.95382 0.94968 1.22130 0.99865 0.95526 1.01461 1.22738 0.88516 0.99806 0.96114 1.67698 1.29569 1.12997 1.08767 1.22724 0.97895 0.89505 0.95988 1.20035 0.92146 0.92125 0.97093 1.20839 0.98333 0.97826 0.93263 1.20968 0.97076 1.01784 0.95414 1.20811 0.93047 1.03845 0.98906 1.20908 0.97259 1.01994 0.94852 1.21000 0.97804 1.00290 0.94714 0.92320 0.75597 0.87574 0.87982 0.84723 0.84821 0.82956 0.82673 0.87044 0.87530 0.87668 0.87514 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.58 12.78 55.43 0.71 -21.87 16 2 C 0.08 1.87 5.45 -17.82 -0.10 1.77 16 3 Si 0.90 19.55 29.54 -169.99 -5.02 14.53 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.52 -12.52 7.46 -34.44 -0.26 -12.78 16 8 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 9 C 0.05 1.14 2.44 -94.07 -0.23 0.91 16 10 H 0.09 2.27 7.00 -51.93 -0.36 1.91 16 11 C 0.53 11.50 7.04 -10.98 -0.08 11.42 16 12 O -0.56 -13.42 14.99 5.56 0.08 -13.33 16 13 N -0.70 -12.35 5.47 -53.77 -0.29 -12.65 16 14 C 0.11 1.66 6.07 -67.89 -0.41 1.25 16 15 H 0.13 2.20 7.40 -51.93 -0.38 1.82 16 16 C -0.19 -2.20 9.80 -26.70 -0.26 -2.47 16 17 C -0.14 -1.60 5.98 -91.78 -0.55 -2.15 16 18 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 19 C -0.09 -1.06 5.62 -104.49 -0.59 -1.65 16 20 C -0.07 -0.75 9.89 -39.28 -0.39 -1.14 16 21 C -0.17 -1.60 10.11 -39.44 -0.40 -2.00 16 22 C 0.09 0.88 11.18 -17.55 -0.20 0.69 16 23 N -0.48 -6.13 10.36 -13.25 -0.14 -6.26 16 24 C 0.10 1.17 10.47 -17.55 -0.18 0.98 16 25 C -0.01 -0.30 4.30 -104.63 -0.45 -0.75 16 26 C -0.08 -1.88 8.31 -39.58 -0.33 -2.21 16 27 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 28 C -0.15 -2.73 10.05 -39.58 -0.40 -3.13 16 29 C -0.13 -2.53 10.05 -39.58 -0.40 -2.92 16 30 C -0.12 -2.59 9.67 -39.58 -0.38 -2.97 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.41 6.82 8.71 -40.82 -0.36 6.46 16 33 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.10 1.05 6.21 -51.93 -0.32 0.72 16 35 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.16 1.68 6.04 -52.49 -0.32 1.36 16 39 H 0.11 2.50 7.89 -52.49 -0.41 2.09 16 40 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.11 2.33 7.95 -52.49 -0.42 1.91 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -29.44 370.39 -10.58 -40.02 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -5.50 Total: 14.17 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -5.99 Total: -20.18 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.28 Total: -40.78 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.44 -10.58 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433938327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.571 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds