Wall clock time and date at job start Tue Mar 31 2020 13:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00025 * 2 1 4 4 H 1.48501 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47410 * 300.00576 * 3 2 1 6 6 H 1.48507 * 109.46572 * 60.00595 * 3 2 1 7 7 C 1.37871 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99894 * 186.39287 * 7 2 1 9 9 C 1.50699 * 120.00252 * 6.39034 * 7 2 1 10 10 H 1.08995 * 109.47150 * 333.93845 * 9 7 2 11 11 C 1.50707 * 109.46939 * 213.93884 * 9 7 2 12 12 O 1.21281 * 119.99947 * 239.99842 * 11 9 7 13 13 N 1.34773 * 119.99892 * 59.99981 * 11 9 7 14 14 C 1.46505 * 120.00190 * 179.97438 * 13 11 9 15 15 H 1.08998 * 115.55380 * 350.69053 * 14 13 11 16 16 C 1.53071 * 117.49520 * 136.39705 * 14 13 11 17 17 C 1.52994 * 117.50097 * 205.00110 * 14 13 11 18 18 H 1.09006 * 117.49916 * 0.02721 * 17 14 13 19 19 C 1.50693 * 117.50027 * 145.01831 * 17 14 13 20 20 C 1.38669 * 120.42361 * 239.93446 * 19 17 14 21 21 C 1.38630 * 118.42334 * 179.97438 * 20 19 17 22 22 C 1.38222 * 119.16124 * 0.02562 * 21 20 19 23 23 N 1.31850 * 120.76249 * 359.71998 * 22 21 20 24 24 C 1.31884 * 121.72643 * 0.57350 * 23 22 21 25 25 C 1.50695 * 109.47237 * 93.94262 * 9 7 2 26 26 C 1.38235 * 120.00257 * 53.84331 * 25 9 7 27 27 C 1.38244 * 120.00070 * 179.78846 * 26 25 9 28 28 C 1.38231 * 119.99521 * 0.44533 * 27 26 25 29 29 C 1.38239 * 120.00538 * 359.80947 * 28 27 26 30 30 C 1.38234 * 119.99494 * 359.97438 * 29 28 27 31 31 H 0.97005 * 119.99983 * 359.97438 * 1 2 3 32 32 H 0.97004 * 120.00144 * 0.02562 * 13 11 9 33 33 H 1.09006 * 117.49154 * 0.02562 * 16 14 13 34 34 H 1.08997 * 117.53516 * 214.95408 * 16 14 13 35 35 H 1.08007 * 120.78710 * 359.96159 * 20 19 17 36 36 H 1.08009 * 120.41896 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.61697 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.61958 * 179.71054 * 24 23 22 39 39 H 1.08002 * 119.99999 * 0.02562 * 26 25 9 40 40 H 1.07999 * 119.99752 * 180.27936 * 27 26 25 41 41 H 1.08001 * 119.99832 * 179.83082 * 28 27 26 42 42 H 1.07997 * 120.00086 * 180.02562 * 29 28 27 43 43 H 1.07997 * 119.99535 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3963 1.2127 7 6 2.0045 -1.1940 -0.0005 8 1 3.0795 -1.1970 0.1036 9 6 1.2580 -2.4950 -0.1464 10 1 0.2375 -2.3710 0.2160 11 6 1.9504 -3.5644 0.6587 12 8 2.3790 -4.5562 0.1078 13 7 2.0934 -3.4186 1.9909 14 6 2.7660 -4.4584 2.7737 15 1 2.9808 -5.3840 2.2396 16 6 3.7713 -4.0047 3.8350 17 6 2.4120 -4.5651 4.2583 18 1 1.6783 -3.8620 4.6526 19 6 2.3870 -5.9419 4.8704 20 6 1.2230 -6.4365 5.4391 21 6 1.2465 -7.7084 5.9899 22 6 2.4212 -8.4361 5.9547 23 7 3.5081 -7.9356 5.4011 24 6 3.5239 -6.7274 4.8726 25 6 1.2301 -2.8982 -1.5981 26 6 2.4099 -2.9906 -2.3126 27 6 2.3847 -3.3647 -3.6432 28 6 1.1789 -3.6374 -4.2617 29 6 -0.0014 -3.5399 -3.5486 30 6 0.0243 -3.1702 -2.2169 31 1 -0.4850 0.8401 0.0004 32 1 1.7503 -2.6255 2.4316 33 1 3.9316 -2.9327 3.9508 34 1 4.6476 -4.6317 3.9998 35 1 0.3196 -5.8447 5.4527 36 1 0.3581 -8.1256 6.4408 37 1 2.4476 -9.4279 6.3813 38 1 4.4346 -6.3493 4.4320 39 1 3.3517 -2.7742 -1.8303 40 1 3.3068 -3.4412 -4.2002 41 1 1.1589 -3.9270 -5.3019 42 1 -0.9434 -3.7534 -4.0317 43 1 -0.8978 -3.0936 -1.6599 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433938327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:32 Heat of formation + Delta-G solvation = 27.117256 kcal Electronic energy + Delta-G solvation = -25698.315224 eV Core-core repulsion = 22093.998353 eV Total energy + Delta-G solvation = -3604.316870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40990 -40.78761 -39.49268 -38.16427 -35.53509 -34.15436 -33.22138 -32.84686 -31.54941 -31.38842 -29.06831 -25.95648 -25.37926 -24.46175 -23.46517 -23.18055 -22.10598 -21.74583 -21.01897 -18.71925 -18.28507 -17.81078 -17.69524 -17.35662 -16.80211 -16.34577 -16.07593 -15.77910 -15.62596 -15.26384 -15.03664 -14.85994 -14.67147 -14.09581 -14.04008 -13.95914 -13.69838 -13.43926 -13.31827 -13.01862 -12.87241 -12.79350 -12.65249 -12.45207 -12.18722 -11.97239 -11.72423 -11.65594 -11.28138 -10.72155 -10.70634 -10.48481 -10.38912 -10.04965 -9.57430 -9.40013 -9.28172 -8.22989 -6.33091 0.11189 0.32837 0.73890 0.78481 1.40686 1.45506 1.54725 1.85667 2.34358 2.42270 2.72360 3.06631 3.12263 3.25237 3.48271 3.71857 3.76697 3.87642 4.00946 4.07551 4.10752 4.20463 4.29081 4.31028 4.40436 4.46426 4.52531 4.61049 4.77587 4.86216 4.90873 4.95341 4.98538 5.06216 5.11513 5.21710 5.35202 5.35592 5.43931 5.64102 5.68354 5.77184 5.77406 5.81968 5.93660 6.21854 6.39130 6.69136 6.77254 7.01350 7.33735 7.51446 8.85592 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012275 B = 0.003389 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.530552 B = 8259.365137 C = 9604.313932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.038 3.962 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.052 3.948 10 H 0.071 0.929 11 C 0.530 3.470 12 O -0.592 6.592 13 N -0.689 5.689 14 C 0.078 3.922 15 H 0.112 0.888 16 C -0.169 4.169 17 C -0.109 4.109 18 H 0.130 0.870 19 C -0.107 4.107 20 C -0.078 4.078 21 C -0.165 4.165 22 C 0.078 3.922 23 N -0.510 5.510 24 C 0.082 3.918 25 C -0.041 4.041 26 C -0.110 4.110 27 C -0.135 4.135 28 C -0.143 4.143 29 C -0.130 4.130 30 C -0.144 4.144 31 H 0.268 0.732 32 H 0.412 0.588 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.151 0.849 36 H 0.166 0.834 37 H 0.180 0.820 38 H 0.160 0.840 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -8.931 8.946 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.164 4.164 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.031 3.969 10 H 0.089 0.911 11 C 0.320 3.680 12 O -0.474 6.474 13 N -0.338 5.338 14 C -0.028 4.028 15 H 0.129 0.871 16 C -0.207 4.207 17 C -0.129 4.129 18 H 0.148 0.852 19 C -0.109 4.109 20 C -0.104 4.104 21 C -0.184 4.184 22 C -0.078 4.078 23 N -0.219 5.219 24 C -0.074 4.074 25 C -0.042 4.042 26 C -0.129 4.129 27 C -0.153 4.153 28 C -0.161 4.161 29 C -0.147 4.147 30 C -0.162 4.162 31 H 0.077 0.923 32 H 0.249 0.751 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.197 0.803 38 H 0.177 0.823 39 H 0.114 0.886 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.858 -10.004 8.542 13.285 hybrid contribution -0.618 1.963 0.202 2.068 sum 1.240 -8.041 8.744 11.944 Atomic orbital electron populations 1.69979 1.07067 1.27982 1.49201 1.25544 0.95481 1.01940 0.93463 0.85595 0.79146 0.79729 0.77768 1.19363 1.21203 1.19770 1.20757 0.93002 0.89416 1.52160 0.92829 1.18023 0.98475 0.91918 0.88527 0.91104 1.21452 0.77600 0.86449 0.82478 1.90550 1.52212 1.32994 1.71614 1.45237 1.59012 1.22599 1.06946 1.21655 1.00439 0.93760 0.86986 0.87062 1.23713 0.93108 1.03099 1.00773 1.21471 1.01011 0.94957 0.95443 0.85185 1.20178 0.95283 0.95755 0.99720 1.21794 0.97991 0.96181 0.94476 1.22486 1.00673 0.94821 1.00435 1.23295 0.88278 1.00958 0.95317 1.67707 1.31005 1.13336 1.09830 1.22850 0.98416 0.89776 0.96398 1.20148 0.93242 0.93736 0.97088 1.20870 0.97403 0.99759 0.94820 1.21343 0.99126 1.00448 0.94414 1.21287 0.92012 1.02069 1.00705 1.21315 0.99288 1.00370 0.93777 1.21161 0.97163 1.01639 0.96279 0.92290 0.75142 0.86897 0.86358 0.83110 0.81604 0.80299 0.82324 0.88604 0.84621 0.83497 0.84181 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.54 12.78 21.45 0.27 -47.26 16 2 C 0.04 1.90 5.45 84.65 0.46 2.36 16 3 Si 0.95 40.42 29.54 68.60 2.03 42.45 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.52 -25.90 7.46 25.60 0.19 -25.71 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 9 C 0.05 2.51 2.44 -13.03 -0.03 2.48 16 10 H 0.07 3.68 7.00 -2.39 -0.02 3.67 16 11 C 0.53 24.07 7.04 87.66 0.62 24.69 16 12 O -0.59 -29.68 14.99 -3.03 -0.05 -29.72 16 13 N -0.69 -25.24 5.47 -442.42 -2.42 -27.66 16 14 C 0.08 2.37 6.07 45.01 0.27 2.64 16 15 H 0.11 3.90 7.40 -2.39 -0.02 3.88 16 16 C -0.17 -3.87 9.80 30.62 0.30 -3.57 16 17 C -0.11 -2.50 5.98 -11.54 -0.07 -2.57 16 18 H 0.13 2.68 8.14 -2.38 -0.02 2.66 16 19 C -0.11 -2.43 5.62 -19.78 -0.11 -2.54 16 20 C -0.08 -1.52 9.89 22.47 0.22 -1.30 16 21 C -0.16 -2.71 10.11 22.36 0.23 -2.48 16 22 C 0.08 1.48 11.18 84.69 0.95 2.43 16 23 N -0.51 -12.58 10.36 -195.85 -2.03 -14.61 16 24 C 0.08 1.96 10.47 84.67 0.89 2.85 16 25 C -0.04 -1.97 4.30 -19.87 -0.09 -2.05 16 26 C -0.11 -5.02 8.31 22.27 0.19 -4.84 16 27 C -0.14 -5.14 10.05 22.27 0.22 -4.91 16 28 C -0.14 -4.89 10.05 22.27 0.22 -4.67 16 29 C -0.13 -4.75 10.05 22.27 0.22 -4.53 16 30 C -0.14 -6.34 9.67 22.27 0.22 -6.13 16 31 H 0.27 13.38 8.31 -92.70 -0.77 12.61 16 32 H 0.41 14.21 8.71 -92.71 -0.81 13.40 16 33 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.12 2.32 6.21 -2.39 -0.01 2.31 16 35 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.16 3.44 6.04 -2.91 -0.02 3.42 16 39 H 0.10 4.52 7.89 -2.91 -0.02 4.50 16 40 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.11 4.66 7.95 -2.91 -0.02 4.64 16 Total: -1.00 -65.71 370.39 2.93 -62.77 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: 0.23 Total: 41.88 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 4.90 Total: -27.85 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -4.17 Total: -89.52 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.05 Total: -29.72 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -65.71 2.93 -62.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433938327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.889 kcal (2) G-P(sol) polarization free energy of solvation -65.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds