Wall clock time and date at job start Tue Mar 31 2020 13:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47346 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47315 * 299.99684 * 3 2 1 6 6 H 1.48499 * 109.47132 * 59.99905 * 3 2 1 7 7 C 1.37874 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99933 * 185.19981 * 7 2 1 9 9 C 1.50703 * 120.00313 * 5.19154 * 7 2 1 10 10 H 1.09002 * 109.46361 * 24.88699 * 9 7 2 11 11 C 1.50705 * 109.46993 * 144.87954 * 9 7 2 12 12 O 1.21275 * 119.99445 * 120.00331 * 11 9 7 13 13 N 1.34774 * 120.00123 * 300.00576 * 11 9 7 14 14 C 1.46500 * 119.99665 * 179.97438 * 13 11 9 15 15 H 1.08993 * 115.55086 * 350.67200 * 14 13 11 16 16 C 1.52998 * 117.49611 * 136.37472 * 14 13 11 17 17 C 1.52997 * 117.49651 * 204.99562 * 14 13 11 18 18 H 1.08996 * 117.50297 * 0.03179 * 17 14 13 19 19 C 1.50710 * 117.49781 * 145.02069 * 17 14 13 20 20 C 1.38661 * 120.41968 * 240.02714 * 19 17 14 21 21 C 1.38632 * 118.42244 * 179.97438 * 20 19 17 22 22 C 1.38221 * 119.15813 * 359.97438 * 21 20 19 23 23 N 1.31863 * 120.76540 * 359.72496 * 22 21 20 24 24 C 1.31885 * 121.72214 * 0.56710 * 23 22 21 25 25 C 1.50697 * 109.47045 * 264.88533 * 9 7 2 26 26 C 1.38236 * 120.00013 * 306.00351 * 25 9 7 27 27 C 1.38233 * 119.99591 * 179.78898 * 26 25 9 28 28 C 1.38234 * 120.00118 * 0.47071 * 27 26 25 29 29 C 1.38239 * 120.00074 * 359.76591 * 28 27 26 30 30 C 1.38233 * 119.99577 * 126.28495 * 25 9 7 31 31 H 0.96996 * 120.00108 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99822 * 359.97438 * 13 11 9 33 33 H 1.09001 * 117.50271 * 0.02562 * 16 14 13 34 34 H 1.08999 * 117.50020 * 214.97226 * 16 14 13 35 35 H 1.08005 * 120.79165 * 359.95375 * 20 19 17 36 36 H 1.07999 * 120.42440 * 180.02562 * 21 20 19 37 37 H 1.08003 * 119.61906 * 180.02562 * 22 21 20 38 38 H 1.07995 * 119.61482 * 179.70796 * 24 23 22 39 39 H 1.07993 * 119.99834 * 0.02562 * 26 25 9 40 40 H 1.07996 * 119.99983 * 180.25377 * 27 26 25 41 41 H 1.08003 * 120.00244 * 179.78499 * 28 27 26 42 42 H 1.08001 * 119.99964 * 180.02562 * 29 28 27 43 43 H 1.07999 * 120.00314 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0812 -1.1959 0.0853 9 6 1.2557 -2.4966 -0.1170 10 1 0.3033 -2.3241 -0.6184 11 6 2.0746 -3.4763 -0.9174 12 8 2.4203 -4.5267 -0.4195 13 7 2.4228 -3.1852 -2.1864 14 6 3.2193 -4.1374 -2.9642 15 1 3.6238 -4.9801 -2.4037 16 6 2.8023 -4.3881 -4.4148 17 6 4.0654 -3.5800 -4.1106 18 1 4.0298 -2.5048 -4.2858 19 6 5.3942 -4.2385 -4.3787 20 6 6.5695 -3.5075 -4.2956 21 6 7.7687 -4.1549 -4.5500 22 6 7.7530 -5.4983 -4.8751 23 7 6.6163 -6.1635 -4.9391 24 6 5.4568 -5.5789 -4.7089 25 6 1.0047 -3.0576 1.2590 26 6 2.0594 -3.2417 2.1333 27 6 1.8285 -3.7522 3.3970 28 6 0.5442 -4.0877 3.7829 29 6 -0.5099 -3.9081 2.9068 30 6 -0.2796 -3.3934 1.6446 31 1 -0.4850 0.8400 -0.0004 32 1 2.1459 -2.3452 -2.5847 33 1 1.9356 -3.8443 -4.7905 34 1 2.9325 -5.3960 -4.8089 35 1 6.5512 -2.4585 -4.0392 36 1 8.7034 -3.6168 -4.4940 37 1 8.6830 -6.0102 -5.0743 38 1 4.5459 -6.1553 -4.7753 39 1 3.0633 -2.9832 1.8304 40 1 2.6520 -3.8923 4.0816 41 1 0.3642 -4.4898 4.7690 42 1 -1.5134 -4.1698 3.2084 43 1 -1.1031 -3.2534 0.9601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433938336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:36 Heat of formation + Delta-G solvation = 42.612825 kcal Electronic energy + Delta-G solvation = -25767.936952 eV Core-core repulsion = 22164.292019 eV Total energy + Delta-G solvation = -3603.644932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46255 -39.25757 -38.03759 -36.86978 -33.70960 -32.88979 -32.23923 -31.12621 -30.39302 -29.94224 -27.37625 -24.53246 -24.12455 -23.53714 -22.12346 -21.59405 -20.89701 -20.54674 -19.42380 -17.42801 -16.83724 -16.60043 -16.19747 -15.94519 -15.57423 -15.09770 -14.56122 -14.37198 -14.12520 -13.99363 -13.94990 -13.52780 -13.14339 -13.13478 -12.53550 -12.46875 -12.34660 -12.08482 -11.78394 -11.74978 -11.64837 -11.26300 -11.09467 -11.03851 -10.66482 -10.43901 -10.28379 -10.04976 -9.82433 -9.54738 -9.45996 -9.08116 -8.84414 -8.69000 -8.14666 -7.94933 -7.62116 -6.32911 -4.39694 0.96850 1.17306 2.37225 2.39641 3.13156 3.22819 3.25543 3.40278 3.67110 3.75088 4.14427 4.23784 4.32627 4.65832 4.71620 4.80410 4.82464 4.89961 4.93546 5.03418 5.09277 5.20563 5.41996 5.61990 5.71983 5.75261 5.78402 5.85108 5.91217 5.94779 6.06067 6.19858 6.22510 6.35981 6.48985 6.58062 6.58420 6.82961 6.95923 7.08258 7.15770 7.36598 7.43587 7.57995 7.72073 7.86017 7.93078 8.03928 8.26215 8.64870 9.13388 9.26783 10.75320 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.003567 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.403955 B = 7848.086237 C = 9099.698457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.074 3.926 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.051 3.949 10 H 0.090 0.910 11 C 0.532 3.468 12 O -0.562 6.562 13 N -0.701 5.701 14 C 0.112 3.888 15 H 0.134 0.866 16 C -0.189 4.189 17 C -0.135 4.135 18 H 0.119 0.881 19 C -0.090 4.090 20 C -0.070 4.070 21 C -0.170 4.170 22 C 0.085 3.915 23 N -0.482 5.482 24 C 0.095 3.905 25 C -0.010 4.010 26 C -0.085 4.085 27 C -0.135 4.135 28 C -0.148 4.148 29 C -0.132 4.132 30 C -0.117 4.117 31 H 0.267 0.733 32 H 0.408 0.592 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.315 -4.981 -7.895 11.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.131 4.131 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.030 3.970 10 H 0.108 0.892 11 C 0.322 3.678 12 O -0.440 6.440 13 N -0.351 5.351 14 C 0.005 3.995 15 H 0.151 0.849 16 C -0.227 4.227 17 C -0.155 4.155 18 H 0.137 0.863 19 C -0.092 4.092 20 C -0.096 4.096 21 C -0.190 4.190 22 C -0.072 4.072 23 N -0.191 5.191 24 C -0.062 4.062 25 C -0.011 4.011 26 C -0.103 4.103 27 C -0.153 4.153 28 C -0.167 4.167 29 C -0.150 4.150 30 C -0.136 4.136 31 H 0.077 0.923 32 H 0.243 0.757 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.392 -6.489 -7.707 12.496 hybrid contribution 0.334 2.485 0.077 2.508 sum 7.726 -4.004 -7.630 11.573 Atomic orbital electron populations 1.69923 1.05998 1.27380 1.47864 1.24970 0.94884 0.99443 0.93787 0.86446 0.80208 0.83036 0.77898 1.19506 1.20677 1.20748 1.20722 0.93265 0.88327 1.53013 0.91846 1.18123 0.97822 0.92067 0.88952 0.89224 1.21755 0.78733 0.86870 0.80427 1.90586 1.56343 1.26835 1.70269 1.45414 1.54470 1.21227 1.13976 1.21614 0.95625 0.95550 0.86748 0.84859 1.23629 0.97379 1.01389 1.00330 1.21509 0.88553 0.99488 1.05947 0.86286 1.20133 0.94475 0.95047 0.99593 1.21473 0.91646 1.00666 0.95841 1.22131 0.98952 0.96412 1.01456 1.22736 0.96452 0.91732 0.96257 1.67699 0.98552 1.39406 1.13407 1.22707 0.96100 0.91962 0.95386 1.19986 0.92201 0.91840 0.97038 1.20811 0.98982 0.97668 0.92879 1.20950 0.96301 1.01365 0.96652 1.20801 0.93345 1.03532 0.98983 1.20903 0.97935 1.01506 0.94656 1.20981 0.96895 0.99475 0.96214 0.92347 0.75679 0.87742 0.87942 0.84681 0.84821 0.82960 0.82706 0.87190 0.87609 0.87709 0.87544 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.56 12.84 55.43 0.71 -21.84 16 2 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 3 Si 0.90 19.36 29.54 -169.99 -5.02 14.34 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.52 -12.51 7.47 -34.44 -0.26 -12.77 16 8 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 9 C 0.05 1.19 2.38 -94.07 -0.22 0.96 16 10 H 0.09 2.18 7.13 -51.93 -0.37 1.81 16 11 C 0.53 11.43 7.04 -10.98 -0.08 11.36 16 12 O -0.56 -13.37 14.98 5.56 0.08 -13.29 16 13 N -0.70 -12.26 5.47 -53.81 -0.29 -12.55 16 14 C 0.11 1.65 6.07 -67.93 -0.41 1.24 16 15 H 0.13 2.21 7.40 -51.93 -0.38 1.82 16 16 C -0.19 -2.13 9.79 -26.73 -0.26 -2.39 16 17 C -0.13 -1.61 5.99 -91.77 -0.55 -2.16 16 18 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 19 C -0.09 -1.08 5.62 -104.48 -0.59 -1.67 16 20 C -0.07 -0.77 9.89 -39.28 -0.39 -1.16 16 21 C -0.17 -1.66 10.11 -39.44 -0.40 -2.06 16 22 C 0.09 0.90 11.18 -17.54 -0.20 0.71 16 23 N -0.48 -6.19 10.36 -13.25 -0.14 -6.33 16 24 C 0.10 1.17 10.47 -17.55 -0.18 0.98 16 25 C -0.01 -0.22 4.30 -104.63 -0.45 -0.67 16 26 C -0.09 -1.91 8.31 -39.58 -0.33 -2.24 16 27 C -0.13 -2.66 10.05 -39.58 -0.40 -3.06 16 28 C -0.15 -2.77 10.05 -39.58 -0.40 -3.17 16 29 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 30 C -0.12 -2.55 9.67 -39.58 -0.38 -2.94 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.41 6.69 8.71 -40.82 -0.36 6.34 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.10 1.00 6.21 -51.93 -0.32 0.68 16 35 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.16 1.66 6.04 -52.49 -0.32 1.34 16 39 H 0.11 2.50 7.89 -52.49 -0.41 2.08 16 40 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.11 2.33 7.96 -52.49 -0.42 1.92 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -29.54 370.49 -10.57 -40.11 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -5.51 Total: 14.22 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -5.99 Total: -20.25 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.28 Total: -40.72 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.54 -10.57 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433938336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.726 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds