Wall clock time and date at job start Tue Mar 31 2020 13:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34629 * 117.00013 * 2 1 4 4 O 1.21511 * 120.00256 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00009 * 180.02562 * 3 2 1 6 6 C 1.46495 * 119.99779 * 359.97438 * 5 3 2 7 7 C 1.46501 * 120.00040 * 179.97438 * 5 3 2 8 8 C 1.53003 * 109.46703 * 269.99860 * 7 5 3 9 9 N 1.46501 * 109.46703 * 179.97438 * 8 7 5 10 10 C 1.34784 * 119.99925 * 179.97438 * 9 8 7 11 11 O 1.21577 * 119.99799 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00112 * 179.97438 * 10 9 8 13 13 C 1.39454 * 120.00224 * 184.82373 * 12 10 9 14 14 C 1.38644 * 119.64992 * 185.83266 * 13 12 10 15 15 C 1.40826 * 118.67290 * 179.72967 * 14 13 12 16 16 C 1.41542 * 120.99716 * 180.25442 * 15 14 13 17 17 H 1.08004 * 119.99848 * 146.64534 * 16 15 14 18 18 C 1.40029 * 119.99933 * 326.65259 * 16 15 14 19 19 N 1.30748 * 120.00210 * 168.30852 * 18 16 15 20 20 Si 1.86803 * 120.00247 * 348.30795 * 18 16 15 21 21 H 1.48500 * 109.46824 * 92.68469 * 20 18 16 22 22 H 1.48493 * 109.47301 * 212.69007 * 20 18 16 23 23 H 1.48502 * 109.46910 * 332.69018 * 20 18 16 24 24 C 1.41161 * 118.00609 * 0.27160 * 15 14 13 25 25 C 1.36598 * 119.12605 * 0.02562 * 24 15 14 26 26 N 1.32065 * 121.25890 * 0.02562 * 25 24 15 27 27 H 1.08995 * 109.47430 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47263 * 300.00271 * 1 2 3 29 29 H 1.09002 * 109.47181 * 60.00368 * 1 2 3 30 30 H 1.08994 * 109.47359 * 270.00212 * 6 5 3 31 31 H 1.09004 * 109.47007 * 30.00460 * 6 5 3 32 32 H 1.09007 * 109.46883 * 149.99969 * 6 5 3 33 33 H 1.08998 * 109.47247 * 149.99641 * 7 5 3 34 34 H 1.09002 * 109.47100 * 29.99582 * 7 5 3 35 35 H 1.08998 * 109.47448 * 59.99904 * 8 7 5 36 36 H 1.09002 * 109.47115 * 299.99712 * 8 7 5 37 37 H 0.97001 * 120.00447 * 0.02562 * 9 8 7 38 38 H 0.97005 * 119.99704 * 4.83053 * 12 10 9 39 39 H 1.07996 * 120.66466 * 0.02562 * 14 13 12 40 40 H 0.96995 * 119.99798 * 179.97438 * 19 18 16 41 41 H 1.07998 * 120.43763 * 179.97438 * 24 15 14 42 42 H 1.08000 * 119.36777 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2070 0.0415 -0.0005 7 6 4.0743 2.5754 -0.0011 8 6 4.3053 3.0294 -1.4439 9 7 4.9698 4.3350 -1.4444 10 6 5.2758 4.9350 -2.6120 11 8 4.9997 4.3928 -3.6646 12 7 5.8866 6.1363 -2.6125 13 6 6.1126 6.8031 -3.8163 14 6 6.8478 7.9786 -3.8217 15 6 7.0684 8.6319 -5.0496 16 6 7.8164 9.8318 -5.1127 17 1 8.4276 10.0423 -5.9780 18 6 7.7642 10.7460 -4.0533 19 7 8.6179 11.7349 -4.0003 20 14 6.4746 10.5529 -2.7157 21 1 7.0376 9.7548 -1.5970 22 1 6.0753 11.8930 -2.2159 23 1 5.2859 9.8572 -3.2709 24 6 6.5209 8.0544 -6.2155 25 6 5.8047 6.8960 -6.1103 26 7 5.6164 6.3104 -4.9416 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.4052 -0.2631 1.0271 31 1 3.6583 -0.7481 -0.5140 32 1 5.1512 0.2213 -0.5148 33 1 5.0324 2.4953 0.5124 34 1 3.4464 3.3034 0.5127 35 1 3.3472 3.1095 -1.9574 36 1 4.9332 2.3014 -1.9577 37 1 5.1904 4.7674 -0.6046 38 1 6.1692 6.5371 -1.7756 39 1 7.2473 8.3826 -2.9033 40 1 8.5814 12.3683 -3.2667 41 1 6.6657 8.5226 -7.1778 42 1 5.3837 6.4510 -6.9997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434742503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:24 Heat of formation + Delta-G solvation = -54.827648 kcal Electronic energy + Delta-G solvation = -26234.384698 eV Core-core repulsion = 22215.665167 eV Total energy + Delta-G solvation = -4018.719531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89009 -40.00402 -38.40934 -37.52068 -36.09244 -34.70694 -34.19266 -33.75383 -31.28387 -30.21037 -28.61679 -28.07695 -26.62425 -25.96992 -23.77869 -22.34218 -21.69332 -20.94351 -20.10091 -18.60021 -18.24925 -17.76586 -17.36477 -17.04145 -16.34352 -15.77113 -15.50855 -15.26616 -14.78621 -14.60509 -14.50073 -14.27088 -14.15172 -13.80621 -13.63594 -13.22846 -13.07766 -12.94055 -12.82605 -12.65025 -12.40869 -12.34577 -11.70434 -11.54105 -11.11273 -10.98991 -10.89077 -10.82714 -10.66509 -10.07318 -9.92179 -9.72975 -9.37597 -9.28937 -8.97776 -8.18225 -7.90613 -7.25248 -7.01248 -4.72097 1.68565 2.39862 2.43647 2.63683 2.86552 3.01268 3.13591 3.25596 3.55107 3.69391 3.90291 4.38254 4.56523 4.57785 4.61722 4.73459 4.80285 4.88331 5.01736 5.11123 5.14592 5.33509 5.39773 5.55410 5.62670 5.74209 5.86733 5.97414 6.24435 6.34970 6.41909 6.51263 6.56362 6.84828 6.93714 7.03394 7.18490 7.29403 7.66400 7.88488 7.94182 8.17554 8.23806 8.45002 8.67443 8.97036 9.47291 10.00545 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023639 B = 0.002361 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.180672 B =11854.373489 C =12284.563858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.370 6.370 3 C 0.647 3.353 4 O -0.564 6.564 5 N -0.595 5.595 6 C 0.082 3.918 7 C 0.121 3.879 8 C 0.126 3.874 9 N -0.751 5.751 10 C 0.695 3.305 11 O -0.527 6.527 12 N -0.672 5.672 13 C 0.386 3.614 14 C -0.317 4.317 15 C 0.130 3.870 16 C -0.441 4.441 17 H 0.096 0.904 18 C 0.085 3.915 19 N -0.807 5.807 20 Si 0.916 3.084 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.245 1.245 24 C -0.269 4.269 25 C 0.129 3.871 26 N -0.552 5.552 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.393 0.607 38 H 0.404 0.596 39 H 0.109 0.891 40 H 0.286 0.714 41 H 0.111 0.889 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -19.612 13.456 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.283 6.283 3 C 0.401 3.599 4 O -0.452 6.452 5 N -0.336 5.336 6 C -0.061 4.061 7 C -0.001 4.001 8 C 0.000 4.000 9 N -0.410 5.410 10 C 0.395 3.605 11 O -0.398 6.398 12 N -0.320 5.320 13 C 0.157 3.843 14 C -0.343 4.343 15 C 0.122 3.878 16 C -0.472 4.472 17 H 0.114 0.886 18 C -0.135 4.135 19 N -0.432 5.432 20 Si 0.742 3.258 21 H -0.197 1.197 22 H -0.218 1.218 23 H -0.168 1.168 24 C -0.292 4.292 25 C -0.023 4.023 26 N -0.272 5.272 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.226 0.774 38 H 0.239 0.761 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.674 -20.460 12.576 25.891 hybrid contribution 0.262 1.333 1.478 2.007 sum -9.412 -19.127 14.054 25.534 Atomic orbital electron populations 1.23226 0.74231 1.03535 1.02927 1.86229 1.24290 1.30884 1.86943 1.18086 0.83164 0.82281 0.76363 1.91040 1.64157 1.34883 1.55143 1.46406 1.02384 1.08164 1.76625 1.21856 0.96258 0.85619 1.02349 1.21609 0.98162 0.83412 0.96920 1.21426 0.98277 0.83994 0.96332 1.44952 1.66451 1.22131 1.07444 1.15970 0.79397 0.81115 0.84057 1.91027 1.55884 1.63607 1.29236 1.42612 1.61516 1.19370 1.08464 1.17754 0.92670 0.88821 0.85057 1.21232 1.13947 0.99518 0.99633 1.17719 0.87808 0.92169 0.90149 1.19469 1.22897 1.00559 1.04226 0.88644 1.26150 0.95365 0.94147 0.97817 1.69611 1.30752 1.12212 1.30644 0.86240 0.82613 0.76916 0.79982 1.19719 1.21827 1.16843 1.21733 1.07471 1.00888 0.99131 1.21637 0.94952 0.91911 0.93777 1.67279 1.27520 1.35221 0.97132 0.87885 0.91818 0.91650 0.92169 0.90187 0.90365 0.88901 0.88679 0.91161 0.91381 0.77401 0.76129 0.87356 0.90296 0.87128 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -3.47 9.39 -40.29 -0.38 -3.85 16 3 C 0.65 7.34 8.40 54.06 0.45 7.80 16 4 O -0.56 -8.25 15.71 -19.28 -0.30 -8.56 16 5 N -0.60 -5.26 2.87 -187.41 -0.54 -5.79 16 6 C 0.08 0.46 10.44 59.84 0.62 1.08 16 7 C 0.12 1.00 5.52 -4.04 -0.02 0.98 16 8 C 0.13 1.46 6.00 -4.04 -0.02 1.44 16 9 N -0.75 -9.49 5.56 -65.22 -0.36 -9.85 16 10 C 0.70 12.80 8.51 -86.91 -0.74 12.06 16 11 O -0.53 -12.14 14.64 5.30 0.08 -12.06 16 12 N -0.67 -12.53 5.40 -15.86 -0.09 -12.61 16 13 C 0.39 8.94 7.40 -154.68 -1.15 7.80 16 14 C -0.32 -7.55 6.96 -38.45 -0.27 -7.82 16 15 C 0.13 3.28 5.09 -106.55 -0.54 2.74 16 16 C -0.44 -11.65 9.66 -37.65 -0.36 -12.01 16 17 H 0.10 2.63 8.06 -52.48 -0.42 2.21 16 18 C 0.08 2.16 5.48 -17.34 -0.10 2.06 16 19 N -0.81 -20.91 13.92 55.55 0.77 -20.14 16 20 Si 0.92 20.18 24.49 -169.99 -4.16 16.02 16 21 H -0.27 -5.56 6.71 56.52 0.38 -5.18 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.25 -5.69 6.70 56.52 0.38 -5.31 16 24 C -0.27 -6.31 9.85 -39.07 -0.38 -6.70 16 25 C 0.13 2.96 11.10 -18.04 -0.20 2.76 16 26 N -0.55 -13.64 7.90 -12.76 -0.10 -13.74 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.44 7.37 -51.93 -0.38 0.06 16 32 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.09 0.49 8.07 -51.93 -0.42 0.08 16 34 H 0.09 0.87 7.42 -51.93 -0.39 0.48 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.39 3.52 8.49 -40.82 -0.35 3.17 16 38 H 0.40 5.92 8.72 -40.82 -0.36 5.57 16 39 H 0.11 2.45 4.79 -52.49 -0.25 2.20 16 40 H 0.29 6.70 8.29 -40.82 -0.34 6.37 16 41 H 0.11 2.39 8.06 -52.49 -0.42 1.96 16 42 H 0.13 2.56 8.06 -52.49 -0.42 2.13 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -36.02 359.62 -6.84 -42.86 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.54 Total: 8.67 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: -1.64 Total: 13.64 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.31 Total: -62.14 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.60 Total: -24.47 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.16 Total: 16.02 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.02 -6.84 -42.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434742503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.965 kcal (2) G-P(sol) polarization free energy of solvation -36.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds