Wall clock time and date at job start Tue Mar 31 2020 13:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34629 * 117.00013 * 2 1 4 4 O 1.21511 * 120.00256 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00009 * 180.02562 * 3 2 1 6 6 C 1.46495 * 119.99779 * 359.97438 * 5 3 2 7 7 C 1.46501 * 120.00040 * 179.97438 * 5 3 2 8 8 C 1.53003 * 109.46703 * 269.99860 * 7 5 3 9 9 N 1.46501 * 109.46703 * 179.97438 * 8 7 5 10 10 C 1.34784 * 119.99925 * 179.97438 * 9 8 7 11 11 O 1.21577 * 119.99799 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00112 * 179.97438 * 10 9 8 13 13 C 1.39454 * 120.00224 * 184.82373 * 12 10 9 14 14 C 1.38644 * 119.64992 * 185.83266 * 13 12 10 15 15 C 1.40826 * 118.67290 * 179.72967 * 14 13 12 16 16 C 1.41542 * 120.99716 * 180.25442 * 15 14 13 17 17 H 1.08004 * 119.99848 * 146.64534 * 16 15 14 18 18 C 1.40029 * 119.99933 * 326.65259 * 16 15 14 19 19 N 1.30748 * 120.00210 * 168.30852 * 18 16 15 20 20 Si 1.86803 * 120.00247 * 348.30795 * 18 16 15 21 21 H 1.48500 * 109.46824 * 92.68469 * 20 18 16 22 22 H 1.48493 * 109.47301 * 212.69007 * 20 18 16 23 23 H 1.48502 * 109.46910 * 332.69018 * 20 18 16 24 24 C 1.41161 * 118.00609 * 0.27160 * 15 14 13 25 25 C 1.36598 * 119.12605 * 0.02562 * 24 15 14 26 26 N 1.32065 * 121.25890 * 0.02562 * 25 24 15 27 27 H 1.08995 * 109.47430 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47263 * 300.00271 * 1 2 3 29 29 H 1.09002 * 109.47181 * 60.00368 * 1 2 3 30 30 H 1.08994 * 109.47359 * 270.00212 * 6 5 3 31 31 H 1.09004 * 109.47007 * 30.00460 * 6 5 3 32 32 H 1.09007 * 109.46883 * 149.99969 * 6 5 3 33 33 H 1.08998 * 109.47247 * 149.99641 * 7 5 3 34 34 H 1.09002 * 109.47100 * 29.99582 * 7 5 3 35 35 H 1.08998 * 109.47448 * 59.99904 * 8 7 5 36 36 H 1.09002 * 109.47115 * 299.99712 * 8 7 5 37 37 H 0.97001 * 120.00447 * 0.02562 * 9 8 7 38 38 H 0.97005 * 119.99704 * 4.83053 * 12 10 9 39 39 H 1.07996 * 120.66466 * 0.02562 * 14 13 12 40 40 H 0.96995 * 119.99798 * 179.97438 * 19 18 16 41 41 H 1.07998 * 120.43763 * 179.97438 * 24 15 14 42 42 H 1.08000 * 119.36777 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2070 0.0415 -0.0005 7 6 4.0743 2.5754 -0.0011 8 6 4.3053 3.0294 -1.4439 9 7 4.9698 4.3350 -1.4444 10 6 5.2758 4.9350 -2.6120 11 8 4.9997 4.3928 -3.6646 12 7 5.8866 6.1363 -2.6125 13 6 6.1126 6.8031 -3.8163 14 6 6.8478 7.9786 -3.8217 15 6 7.0684 8.6319 -5.0496 16 6 7.8164 9.8318 -5.1127 17 1 8.4276 10.0423 -5.9780 18 6 7.7642 10.7460 -4.0533 19 7 8.6179 11.7349 -4.0003 20 14 6.4746 10.5529 -2.7157 21 1 7.0376 9.7548 -1.5970 22 1 6.0753 11.8930 -2.2159 23 1 5.2859 9.8572 -3.2709 24 6 6.5209 8.0544 -6.2155 25 6 5.8047 6.8960 -6.1103 26 7 5.6164 6.3104 -4.9416 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.4052 -0.2631 1.0271 31 1 3.6583 -0.7481 -0.5140 32 1 5.1512 0.2213 -0.5148 33 1 5.0324 2.4953 0.5124 34 1 3.4464 3.3034 0.5127 35 1 3.3472 3.1095 -1.9574 36 1 4.9332 2.3014 -1.9577 37 1 5.1904 4.7674 -0.6046 38 1 6.1692 6.5371 -1.7756 39 1 7.2473 8.3826 -2.9033 40 1 8.5814 12.3683 -3.2667 41 1 6.6657 8.5226 -7.1778 42 1 5.3837 6.4510 -6.9997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434742503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:24 Heat of formation + Delta-G solvation = -82.093205 kcal Electronic energy + Delta-G solvation = -26235.567022 eV Core-core repulsion = 22215.665167 eV Total energy + Delta-G solvation = -4019.901855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72902 -41.49253 -40.04819 -38.32064 -36.99069 -36.19435 -35.58759 -35.52630 -33.18817 -31.40100 -29.99620 -28.65859 -27.92050 -27.25816 -24.77254 -24.17244 -23.19517 -21.91554 -21.51153 -19.89138 -19.49523 -19.11235 -18.18602 -18.16012 -17.66083 -17.30599 -16.82558 -16.48296 -16.36952 -16.01111 -15.55049 -15.44016 -15.36638 -14.86585 -14.83070 -14.72248 -14.67803 -14.29738 -13.88075 -13.46388 -13.28537 -13.14018 -12.96763 -12.76059 -12.65473 -12.60043 -12.44524 -11.86109 -11.83012 -11.76877 -11.59050 -11.42056 -11.17851 -10.20298 -10.08806 -9.98878 -9.73082 -8.98941 -8.91913 -6.71686 0.59530 0.76609 0.96031 1.24578 1.40466 1.49220 1.54614 1.66388 2.11151 2.18019 2.71512 2.87651 3.18629 3.52181 3.76945 3.90889 4.00478 4.27142 4.32444 4.33997 4.35454 4.44727 4.60695 4.62412 4.65405 4.67613 4.71716 4.76514 4.84424 4.97501 5.13574 5.19064 5.22214 5.29553 5.42611 5.51623 5.68299 5.83900 6.11887 6.12441 6.28572 6.52583 6.70343 6.88939 7.10100 7.49632 7.74055 8.14457 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023639 B = 0.002361 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.180672 B =11854.373489 C =12284.563858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.369 6.369 3 C 0.638 3.362 4 O -0.606 6.606 5 N -0.592 5.592 6 C 0.077 3.923 7 C 0.129 3.871 8 C 0.131 3.869 9 N -0.724 5.724 10 C 0.693 3.307 11 O -0.577 6.577 12 N -0.662 5.662 13 C 0.383 3.617 14 C -0.320 4.320 15 C 0.115 3.885 16 C -0.470 4.470 17 H 0.066 0.934 18 C 0.051 3.949 19 N -0.840 5.840 20 Si 0.966 3.034 21 H -0.240 1.240 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.279 4.279 25 C 0.128 3.872 26 N -0.573 5.573 27 H 0.138 0.862 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.416 0.584 38 H 0.424 0.576 39 H 0.121 0.879 40 H 0.297 0.703 41 H 0.122 0.878 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 -21.370 16.035 28.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.282 6.282 3 C 0.393 3.607 4 O -0.498 6.498 5 N -0.332 5.332 6 C -0.064 4.064 7 C 0.007 3.993 8 C 0.005 3.995 9 N -0.383 5.383 10 C 0.392 3.608 11 O -0.451 6.451 12 N -0.312 5.312 13 C 0.153 3.847 14 C -0.346 4.346 15 C 0.106 3.894 16 C -0.501 4.501 17 H 0.084 0.916 18 C -0.166 4.166 19 N -0.466 5.466 20 Si 0.790 3.210 21 H -0.164 1.164 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.302 4.302 25 C -0.023 4.023 26 N -0.293 5.293 27 H 0.156 0.844 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.153 0.847 34 H 0.106 0.894 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.253 0.747 38 H 0.262 0.738 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.140 0.860 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.915 -22.247 15.246 28.734 hybrid contribution 0.310 1.744 0.613 1.874 sum -9.604 -20.503 15.859 27.643 Atomic orbital electron populations 1.23493 0.72968 1.05674 1.02376 1.86242 1.25575 1.29816 1.86580 1.18431 0.83962 0.82234 0.76066 1.91006 1.65299 1.36261 1.57191 1.46600 1.01808 1.09391 1.75383 1.22089 0.96260 0.84191 1.03874 1.21623 0.99914 0.83243 0.94507 1.21454 0.96268 0.83274 0.98532 1.44663 1.64815 1.22129 1.06722 1.16154 0.78991 0.80818 0.84818 1.90997 1.57764 1.64778 1.31536 1.42464 1.61320 1.19408 1.07976 1.17958 0.91910 0.88813 0.86060 1.21309 1.13989 0.99716 0.99568 1.17913 0.87894 0.91999 0.91576 1.19439 1.24285 1.02158 1.04252 0.91600 1.26823 0.96784 0.93530 0.99435 1.69630 1.32014 1.13035 1.31943 0.85475 0.79461 0.77693 0.78418 1.16427 1.20540 1.18856 1.21924 1.07611 1.01312 0.99358 1.22090 0.94242 0.91520 0.94489 1.67413 1.28024 1.35825 0.98007 0.84379 0.91942 0.92699 0.90210 0.90329 0.88802 0.84697 0.89351 0.94718 0.91270 0.74733 0.73796 0.86108 0.89205 0.86026 0.82487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 10.56 113.37 1.20 1.81 16 2 O -0.37 -6.50 9.39 -55.39 -0.52 -7.02 16 3 C 0.64 13.95 8.40 129.79 1.09 15.04 16 4 O -0.61 -17.77 15.71 19.81 0.31 -17.46 16 5 N -0.59 -9.20 2.87 -977.26 -2.81 -12.01 16 6 C 0.08 0.63 10.44 127.77 1.33 1.97 16 7 C 0.13 1.78 5.52 86.38 0.48 2.26 16 8 C 0.13 2.81 6.00 86.38 0.52 3.33 16 9 N -0.72 -16.50 5.56 -478.53 -2.66 -19.16 16 10 C 0.69 24.33 8.51 179.05 1.52 25.85 16 11 O -0.58 -26.19 14.64 -3.96 -0.06 -26.25 16 12 N -0.66 -23.23 5.40 -322.37 -1.74 -24.97 16 13 C 0.38 17.23 7.40 132.76 0.98 18.22 16 14 C -0.32 -14.87 6.96 23.00 0.16 -14.71 16 15 C 0.11 5.81 5.09 -21.11 -0.11 5.71 16 16 C -0.47 -25.48 9.66 23.52 0.23 -25.25 16 17 H 0.07 3.83 8.06 -2.91 -0.02 3.80 16 18 C 0.05 2.59 5.48 85.29 0.47 3.06 16 19 N -0.84 -43.85 13.92 21.84 0.30 -43.55 16 20 Si 0.97 40.34 24.49 68.60 1.68 42.02 16 21 H -0.24 -8.76 6.71 99.48 0.67 -8.09 16 22 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 23 H -0.26 -11.81 6.70 99.48 0.67 -11.15 16 24 C -0.28 -13.11 9.85 22.60 0.22 -12.89 16 25 C 0.13 5.80 11.10 84.27 0.94 6.74 16 26 N -0.57 -27.83 7.90 -194.27 -1.53 -29.36 16 27 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.08 0.69 7.37 -2.39 -0.02 0.68 16 32 H 0.09 0.50 8.07 -2.38 -0.02 0.49 16 33 H 0.14 0.79 8.07 -2.39 -0.02 0.77 16 34 H 0.09 1.41 7.42 -2.39 -0.02 1.39 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.42 5.90 8.49 -92.71 -0.79 5.11 16 38 H 0.42 11.05 8.72 -92.70 -0.81 10.24 16 39 H 0.12 5.20 4.79 -2.91 -0.01 5.19 16 40 H 0.30 13.83 8.29 -92.71 -0.77 13.06 16 41 H 0.12 5.30 8.06 -2.91 -0.02 5.28 16 42 H 0.16 6.03 8.06 -2.91 -0.02 6.00 16 Total: -1.00 -80.53 359.62 1.41 -79.13 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.60 Total: 27.52 kcal Atomic # 6 Polarization: 22.09 SS G_CDS: 9.03 Total: 31.12 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -8.44 Total: -129.05 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.27 Total: -50.73 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.68 Total: 42.02 kcal Total: -80.53 1.41 -79.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434742503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.965 kcal (2) G-P(sol) polarization free energy of solvation -80.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds