Wall clock time and date at job start Tue Mar 31 2020 13:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 120.00330 * 2 1 4 4 H 1.48499 * 109.46839 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46861 * 300.00139 * 3 2 1 6 6 H 1.48490 * 109.47046 * 60.00296 * 3 2 1 7 7 C 1.39940 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99620 * 195.61833 * 7 2 1 9 9 C 1.41402 * 120.00082 * 15.61649 * 7 2 1 10 10 C 1.40775 * 120.21137 * 29.19602 * 9 7 2 11 11 C 1.37639 * 119.89044 * 179.97438 * 10 9 7 12 12 C 1.38539 * 120.31720 * 359.97438 * 11 10 9 13 13 C 1.39243 * 120.42817 * 0.26014 * 12 11 10 14 14 N 1.39958 * 119.94769 * 179.74692 * 13 12 11 15 15 C 1.34783 * 119.99916 * 213.02563 * 14 13 12 16 16 O 1.21583 * 119.99922 * 5.14199 * 15 14 13 17 17 N 1.34775 * 119.99796 * 185.13981 * 15 14 13 18 18 C 1.47063 * 136.06004 * 359.63631 * 17 15 14 19 19 C 1.53240 * 88.08300 * 207.19948 * 18 17 15 20 20 C 1.50695 * 114.50511 * 220.45546 * 19 18 17 21 21 C 1.38242 * 119.99943 * 33.56869 * 20 19 18 22 22 C 1.38236 * 119.99526 * 179.76190 * 21 20 19 23 23 C 1.38237 * 120.00307 * 0.51802 * 22 21 20 24 24 C 1.38227 * 119.99929 * 359.73646 * 23 22 21 25 25 C 1.38234 * 120.00242 * 0.02562 * 24 23 22 26 26 C 1.47070 * 136.05494 * 179.97438 * 17 15 14 27 27 C 1.38280 * 120.10611 * 359.48197 * 13 12 11 28 28 H 0.97002 * 119.99624 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.05716 * 359.97438 * 10 9 7 30 30 H 1.07991 * 119.84464 * 179.97438 * 11 10 9 31 31 H 1.07994 * 119.78433 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00216 * 33.02322 * 14 13 12 33 33 H 1.09005 * 113.46633 * 321.93158 * 18 17 15 34 34 H 1.09000 * 113.47004 * 92.36653 * 18 17 15 35 35 H 1.09004 * 114.01533 * 87.71076 * 19 18 17 36 36 H 1.07991 * 119.99940 * 0.02562 * 21 20 19 37 37 H 1.08007 * 119.99856 * 180.23084 * 22 21 20 38 38 H 1.08001 * 119.99946 * 179.72437 * 23 22 21 39 39 H 1.08003 * 120.00317 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.00583 * 179.97438 * 25 24 23 41 41 H 1.08995 * 113.46865 * 267.63084 * 26 17 15 42 42 H 1.09000 * 113.46549 * 38.07184 * 26 17 15 43 43 H 1.08003 * 120.16022 * 180.27667 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3462 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0580 -1.2293 0.2513 9 6 1.3400 -2.4138 -0.3307 10 6 0.2410 -2.3948 -1.2103 11 6 -0.4040 -3.5686 -1.5276 12 6 0.0234 -4.7699 -0.9858 13 6 1.1058 -4.8033 -0.1106 14 7 1.5258 -6.0218 0.4350 15 6 2.0419 -6.0608 1.6795 16 8 2.0569 -5.0554 2.3631 17 7 2.5414 -7.2141 2.1661 18 6 2.6951 -8.5919 1.6755 19 6 2.6403 -9.0622 3.1329 20 6 3.6102 -10.1650 3.4707 21 6 4.8432 -10.2160 2.8477 22 6 5.7348 -11.2248 3.1613 23 6 5.3892 -12.1887 4.0899 24 6 4.1543 -12.1408 4.7090 25 6 3.2646 -11.1292 4.3991 26 6 3.1672 -7.6500 3.4236 27 6 1.7700 -3.6353 0.2161 28 1 -0.4850 0.8401 0.0004 29 1 -0.0955 -1.4607 -1.6355 30 1 -1.2472 -3.5531 -2.2021 31 1 -0.4893 -5.6857 -1.2403 32 1 1.4453 -6.8384 -0.0824 33 1 1.8513 -8.9365 1.0777 34 1 3.6560 -8.7771 1.1954 35 1 1.6314 -9.2478 3.5016 36 1 5.1115 -9.4653 2.1193 37 1 6.6996 -11.2625 2.6773 38 1 6.0841 -12.9794 4.3316 39 1 3.8841 -12.8941 5.4342 40 1 2.2995 -11.0919 4.8825 41 1 4.2550 -7.5818 3.4135 42 1 2.7240 -7.1950 4.3094 43 1 2.6126 -3.6609 0.8914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466577630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:41 Heat of formation + Delta-G solvation = 63.216039 kcal Electronic energy + Delta-G solvation = -25192.485091 eV Core-core repulsion = 21589.733581 eV Total energy + Delta-G solvation = -3602.751510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92109 -39.42468 -38.21131 -36.82955 -34.32749 -32.98912 -32.15774 -31.22636 -29.76031 -29.12024 -27.31135 -26.14332 -25.22040 -23.83477 -22.83291 -21.45722 -20.83486 -20.33596 -19.08987 -18.04126 -17.56685 -17.16548 -16.05964 -15.75950 -15.43949 -15.07985 -15.04934 -14.63087 -14.34104 -14.19120 -13.86134 -13.65531 -13.10117 -13.01856 -12.81992 -12.75532 -12.67846 -12.31222 -12.09088 -11.63831 -11.36743 -11.28159 -11.27022 -11.07106 -11.04639 -10.59521 -10.46654 -10.11788 -9.68300 -9.53284 -9.23384 -9.14859 -8.98562 -8.86202 -8.61087 -7.35881 -6.81242 -6.64683 -4.27491 0.99243 1.08772 2.57415 2.81703 2.99594 3.14216 3.20518 3.24247 3.39473 3.70135 4.02458 4.15470 4.28721 4.44026 4.56564 4.67643 4.72270 4.77058 4.82231 4.96340 5.15352 5.23888 5.24981 5.32830 5.48505 5.65150 5.67010 5.72460 5.75868 5.88640 6.15581 6.20654 6.27064 6.30622 6.43483 6.67425 6.83707 6.95921 7.09149 7.15053 7.30281 7.47213 7.74066 7.87690 8.02794 8.15596 8.31490 8.44857 8.71681 8.95354 9.03304 9.09264 10.31728 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.002271 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.091174 B =12324.452454 C =12954.276909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.077 0.923 9 C 0.122 3.878 10 C -0.169 4.169 11 C -0.092 4.092 12 C -0.261 4.261 13 C 0.169 3.831 14 N -0.678 5.678 15 C 0.729 3.271 16 O -0.557 6.557 17 N -0.670 5.670 18 C 0.106 3.894 19 C -0.089 4.089 20 C -0.069 4.069 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.110 4.110 26 C 0.138 3.862 27 C -0.209 4.209 28 H 0.278 0.722 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.393 0.607 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 -22.554 5.225 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.119 3.881 10 C -0.189 4.189 11 C -0.111 4.111 12 C -0.283 4.283 13 C 0.077 3.923 14 N -0.323 5.323 15 C 0.433 3.567 16 O -0.431 6.431 17 N -0.412 5.412 18 C -0.018 4.018 19 C -0.108 4.108 20 C -0.070 4.070 21 C -0.133 4.133 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.128 4.128 26 C 0.014 3.986 27 C -0.231 4.231 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.226 0.774 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.962 -21.394 5.669 23.202 hybrid contribution 0.238 0.235 -0.195 0.388 sum 7.201 -21.159 5.474 23.011 Atomic orbital electron populations 1.69840 1.07481 1.28904 1.36131 1.25872 0.94744 1.01130 0.92391 0.86271 0.80974 0.81093 0.78408 1.18473 1.19807 1.20062 1.19540 0.97352 0.90831 1.41346 0.90491 1.17491 0.90863 0.91680 0.88031 1.21246 1.00093 0.96500 1.01089 1.20433 0.98499 0.92695 0.99441 1.19998 1.01316 0.97188 1.09787 1.17252 0.95025 0.83473 0.96541 1.42520 1.65419 1.10064 1.14346 1.15277 0.78528 0.81173 0.81766 1.91013 1.62084 1.31548 1.58463 1.48625 1.64664 1.08300 1.19566 1.23006 1.02148 0.80673 0.95940 1.21925 0.99257 0.92402 0.97177 1.19531 0.94663 0.95720 0.97062 1.21100 0.93502 0.98758 0.99964 1.21158 0.99489 0.94875 0.97995 1.21177 0.96818 0.99009 0.97165 1.21152 0.94168 0.98512 0.99916 1.21065 0.99799 0.94385 0.97601 1.22809 0.98060 0.89642 0.88072 1.21016 1.04372 0.91697 1.05970 0.91085 0.86799 0.88990 0.89347 0.77362 0.90471 0.89729 0.86899 0.85754 0.86000 0.86205 0.86076 0.85882 0.89992 0.90101 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.70 11.15 55.55 0.62 -21.08 16 2 C 0.08 2.00 5.15 -17.34 -0.09 1.91 16 3 Si 0.91 19.66 29.59 -169.99 -5.03 14.63 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.46 -13.02 9.04 -37.74 -0.34 -13.36 16 8 H 0.08 2.13 7.89 -52.49 -0.41 1.71 16 9 C 0.12 3.47 5.52 -106.85 -0.59 2.88 16 10 C -0.17 -4.55 8.66 -38.84 -0.34 -4.89 16 11 C -0.09 -2.19 10.02 -39.69 -0.40 -2.58 16 12 C -0.26 -5.92 9.97 -39.10 -0.39 -6.31 16 13 C 0.17 4.01 6.28 -83.76 -0.53 3.48 16 14 N -0.68 -13.03 5.35 -14.27 -0.08 -13.10 16 15 C 0.73 14.51 8.53 -86.91 -0.74 13.77 16 16 O -0.56 -13.96 14.79 5.29 0.08 -13.89 16 17 N -0.67 -9.58 3.69 -191.18 -0.71 -10.29 16 18 C 0.11 1.00 7.68 -8.64 -0.07 0.93 16 19 C -0.09 -0.75 4.30 -91.38 -0.39 -1.15 16 20 C -0.07 -0.55 5.35 -104.62 -0.56 -1.11 16 21 C -0.12 -0.89 8.72 -39.58 -0.35 -1.23 16 22 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 23 C -0.12 -0.84 10.05 -39.59 -0.40 -1.23 16 24 C -0.12 -0.81 10.05 -39.59 -0.40 -1.21 16 25 C -0.11 -0.81 9.72 -39.58 -0.38 -1.20 16 26 C 0.14 1.56 8.11 -8.50 -0.07 1.49 16 27 C -0.21 -5.65 8.39 -38.68 -0.32 -5.97 16 28 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 29 H 0.11 3.12 6.43 -52.48 -0.34 2.78 16 30 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.39 5.96 8.54 -40.82 -0.35 5.61 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.69 6.20 -51.93 -0.32 0.37 16 35 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16 36 H 0.12 0.87 6.49 -52.49 -0.34 0.53 16 37 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.12 0.60 8.06 -52.48 -0.42 0.17 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.08 0.85 7.76 -51.93 -0.40 0.45 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.11 3.04 6.39 -52.48 -0.34 2.70 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -33.83 362.20 -11.84 -45.67 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.44 Total: 9.60 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -6.75 Total: -17.00 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.16 Total: -44.47 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.08 Total: -13.89 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.83 -11.84 -45.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.886 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds