Wall clock time and date at job start Tue Mar 31 2020 13:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 120.00330 * 2 1 4 4 H 1.48499 * 109.46839 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46861 * 300.00139 * 3 2 1 6 6 H 1.48490 * 109.47046 * 60.00296 * 3 2 1 7 7 C 1.39940 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99620 * 195.61833 * 7 2 1 9 9 C 1.41402 * 120.00082 * 15.61649 * 7 2 1 10 10 C 1.40775 * 120.21137 * 29.19602 * 9 7 2 11 11 C 1.37639 * 119.89044 * 179.97438 * 10 9 7 12 12 C 1.38539 * 120.31720 * 359.97438 * 11 10 9 13 13 C 1.39243 * 120.42817 * 0.26014 * 12 11 10 14 14 N 1.39958 * 119.94769 * 179.74692 * 13 12 11 15 15 C 1.34783 * 119.99916 * 213.02563 * 14 13 12 16 16 O 1.21583 * 119.99922 * 5.14199 * 15 14 13 17 17 N 1.34775 * 119.99796 * 185.13981 * 15 14 13 18 18 C 1.47063 * 136.06004 * 359.63631 * 17 15 14 19 19 C 1.53240 * 88.08300 * 207.19948 * 18 17 15 20 20 C 1.50695 * 114.50511 * 220.45546 * 19 18 17 21 21 C 1.38242 * 119.99943 * 33.56869 * 20 19 18 22 22 C 1.38236 * 119.99526 * 179.76190 * 21 20 19 23 23 C 1.38237 * 120.00307 * 0.51802 * 22 21 20 24 24 C 1.38227 * 119.99929 * 359.73646 * 23 22 21 25 25 C 1.38234 * 120.00242 * 0.02562 * 24 23 22 26 26 C 1.47070 * 136.05494 * 179.97438 * 17 15 14 27 27 C 1.38280 * 120.10611 * 359.48197 * 13 12 11 28 28 H 0.97002 * 119.99624 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.05716 * 359.97438 * 10 9 7 30 30 H 1.07991 * 119.84464 * 179.97438 * 11 10 9 31 31 H 1.07994 * 119.78433 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00216 * 33.02322 * 14 13 12 33 33 H 1.09005 * 113.46633 * 321.93158 * 18 17 15 34 34 H 1.09000 * 113.47004 * 92.36653 * 18 17 15 35 35 H 1.09004 * 114.01533 * 87.71076 * 19 18 17 36 36 H 1.07991 * 119.99940 * 0.02562 * 21 20 19 37 37 H 1.08007 * 119.99856 * 180.23084 * 22 21 20 38 38 H 1.08001 * 119.99946 * 179.72437 * 23 22 21 39 39 H 1.08003 * 120.00317 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.00583 * 179.97438 * 25 24 23 41 41 H 1.08995 * 113.46865 * 267.63084 * 26 17 15 42 42 H 1.09000 * 113.46549 * 38.07184 * 26 17 15 43 43 H 1.08003 * 120.16022 * 180.27667 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3462 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0580 -1.2293 0.2513 9 6 1.3400 -2.4138 -0.3307 10 6 0.2410 -2.3948 -1.2103 11 6 -0.4040 -3.5686 -1.5276 12 6 0.0234 -4.7699 -0.9858 13 6 1.1058 -4.8033 -0.1106 14 7 1.5258 -6.0218 0.4350 15 6 2.0419 -6.0608 1.6795 16 8 2.0569 -5.0554 2.3631 17 7 2.5414 -7.2141 2.1661 18 6 2.6951 -8.5919 1.6755 19 6 2.6403 -9.0622 3.1329 20 6 3.6102 -10.1650 3.4707 21 6 4.8432 -10.2160 2.8477 22 6 5.7348 -11.2248 3.1613 23 6 5.3892 -12.1887 4.0899 24 6 4.1543 -12.1408 4.7090 25 6 3.2646 -11.1292 4.3991 26 6 3.1672 -7.6500 3.4236 27 6 1.7700 -3.6353 0.2161 28 1 -0.4850 0.8401 0.0004 29 1 -0.0955 -1.4607 -1.6355 30 1 -1.2472 -3.5531 -2.2021 31 1 -0.4893 -5.6857 -1.2403 32 1 1.4453 -6.8384 -0.0824 33 1 1.8513 -8.9365 1.0777 34 1 3.6560 -8.7771 1.1954 35 1 1.6314 -9.2478 3.5016 36 1 5.1115 -9.4653 2.1193 37 1 6.6996 -11.2625 2.6773 38 1 6.0841 -12.9794 4.3316 39 1 3.8841 -12.8941 5.4342 40 1 2.2995 -11.0919 4.8825 41 1 4.2550 -7.5818 3.4135 42 1 2.7240 -7.1950 4.3094 43 1 2.6126 -3.6609 0.8914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466577630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:41 Heat of formation + Delta-G solvation = 43.972687 kcal Electronic energy + Delta-G solvation = -25193.319545 eV Core-core repulsion = 21589.733581 eV Total energy + Delta-G solvation = -3603.585964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.98421 -40.63425 -39.33646 -38.45816 -36.17433 -34.84550 -32.99573 -31.75595 -31.74248 -30.51015 -28.69079 -27.25949 -27.02636 -24.71942 -23.46295 -23.01838 -22.65731 -21.46003 -20.36006 -19.61202 -18.97843 -18.00930 -17.50974 -17.10438 -16.82784 -16.49562 -16.17273 -16.05544 -15.61229 -15.33556 -14.94224 -14.83316 -14.65170 -14.18666 -14.04110 -13.70202 -13.69783 -13.60663 -13.39009 -13.18123 -12.99723 -12.83136 -12.57704 -12.22525 -12.08300 -11.92457 -11.87054 -11.76203 -11.58003 -11.32624 -11.03760 -10.74782 -9.81148 -9.75469 -9.55509 -9.36929 -8.68855 -8.61409 -6.37854 0.43907 0.56672 0.89231 0.99296 1.35062 1.39747 1.47874 1.51450 2.11851 2.21796 2.74026 2.80634 2.90312 3.53479 3.71044 3.77018 3.89672 3.99614 4.21208 4.28596 4.36365 4.37265 4.45660 4.50466 4.53028 4.61989 4.67021 4.70131 4.78380 5.02435 5.08625 5.11255 5.11828 5.16901 5.21630 5.23504 5.31931 5.63924 5.70054 5.72750 5.76050 5.83660 6.04727 6.09518 6.16497 6.23760 6.39518 6.67729 6.91968 6.95393 7.00929 7.54187 8.36495 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.002271 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.091174 B =12324.452454 C =12954.276909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.256 1.256 6 H -0.266 1.266 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.091 3.909 10 C -0.193 4.193 11 C -0.089 4.089 12 C -0.248 4.248 13 C 0.176 3.824 14 N -0.666 5.666 15 C 0.722 3.278 16 O -0.620 6.620 17 N -0.670 5.670 18 C 0.106 3.894 19 C -0.063 4.063 20 C -0.078 4.078 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.117 4.117 26 C 0.126 3.874 27 C -0.237 4.237 28 H 0.288 0.712 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.416 0.584 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 -25.174 4.764 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.191 1.191 7 C -0.535 4.535 8 H 0.082 0.918 9 C 0.088 3.912 10 C -0.213 4.213 11 C -0.107 4.107 12 C -0.269 4.269 13 C 0.082 3.918 14 N -0.313 5.313 15 C 0.426 3.574 16 O -0.500 6.500 17 N -0.410 5.410 18 C -0.016 4.016 19 C -0.082 4.082 20 C -0.079 4.079 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.135 4.135 26 C 0.004 3.996 27 C -0.259 4.259 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.253 0.747 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.785 -24.134 5.200 25.603 hybrid contribution 0.322 0.771 0.015 0.836 sum 7.108 -23.363 5.215 24.971 Atomic orbital electron populations 1.69877 1.08831 1.30431 1.36462 1.26744 0.95647 1.04373 0.91253 0.85136 0.79108 0.76052 0.79191 1.18646 1.17992 1.19114 1.19729 0.97167 0.92537 1.44065 0.91833 1.17838 0.92026 0.92327 0.88988 1.21216 1.00746 0.97354 1.01991 1.20835 0.98728 0.91990 0.99177 1.20439 1.00101 0.98512 1.07850 1.17324 0.94486 0.84090 0.95917 1.42246 1.65128 1.09504 1.14464 1.15495 0.78552 0.81881 0.81482 1.90970 1.64412 1.34540 1.60049 1.48638 1.62962 1.08364 1.21026 1.23358 1.04014 0.77096 0.97118 1.21713 0.99727 0.90671 0.96049 1.19448 0.94675 0.95824 0.97972 1.21232 0.93644 0.99147 1.00238 1.21406 1.00069 0.94810 0.98247 1.21487 0.97191 0.99264 0.96679 1.21438 0.94101 0.98762 1.00173 1.21283 1.00567 0.94310 0.97377 1.23130 0.98568 0.91373 0.86559 1.20944 1.04923 0.93215 1.06794 0.90129 0.88163 0.85483 0.84866 0.74684 0.88401 0.87904 0.85990 0.85416 0.84662 0.84435 0.84296 0.84672 0.89039 0.91343 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.55 11.15 21.83 0.24 -46.30 16 2 C 0.03 1.85 5.15 85.25 0.44 2.29 16 3 Si 0.98 41.52 29.59 68.60 2.03 43.55 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.50 -30.34 9.04 23.46 0.21 -30.13 16 8 H 0.06 3.80 7.89 -2.91 -0.02 3.78 16 9 C 0.09 5.43 5.52 -21.31 -0.12 5.31 16 10 C -0.19 -10.65 8.66 22.75 0.20 -10.45 16 11 C -0.09 -4.12 10.02 22.20 0.22 -3.90 16 12 C -0.25 -10.68 9.97 22.58 0.23 -10.46 16 13 C 0.18 8.32 6.28 38.09 0.24 8.56 16 14 N -0.67 -25.02 5.35 -317.32 -1.70 -26.72 16 15 C 0.72 29.10 8.53 179.05 1.53 30.63 16 16 O -0.62 -32.72 14.79 -3.98 -0.06 -32.78 16 17 N -0.67 -18.65 3.69 -877.03 -3.24 -21.89 16 18 C 0.11 1.72 7.68 83.09 0.64 2.36 16 19 C -0.06 -0.93 4.30 -11.29 -0.05 -0.98 16 20 C -0.08 -1.07 5.35 -19.86 -0.11 -1.17 16 21 C -0.12 -1.67 8.72 22.27 0.19 -1.47 16 22 C -0.13 -1.54 10.05 22.27 0.22 -1.31 16 23 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 24 C -0.13 -1.41 10.05 22.27 0.22 -1.19 16 25 C -0.12 -1.45 9.72 22.27 0.22 -1.23 16 26 C 0.13 2.80 8.11 83.18 0.67 3.47 16 27 C -0.24 -13.46 8.39 22.85 0.19 -13.27 16 28 H 0.29 14.46 8.30 -92.71 -0.77 13.69 16 29 H 0.10 5.70 6.43 -2.91 -0.02 5.68 16 30 H 0.13 4.95 8.06 -2.92 -0.02 4.93 16 31 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.42 11.52 8.54 -92.71 -0.79 10.73 16 33 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.10 1.37 6.20 -2.39 -0.01 1.36 16 35 H 0.12 1.64 8.11 -2.39 -0.02 1.62 16 36 H 0.13 1.54 6.49 -2.92 -0.02 1.52 16 37 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.09 1.85 7.76 -2.39 -0.02 1.83 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 4.95 6.39 -2.91 -0.02 4.93 16 Total: -1.00 -79.05 362.20 2.90 -76.15 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.25 Total: 32.15 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 5.38 Total: -24.15 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -4.69 Total: -94.92 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.06 Total: -32.78 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -79.05 2.90 -76.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.124 kcal (2) G-P(sol) polarization free energy of solvation -79.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds