Wall clock time and date at job start Tue Mar 31 2020 13:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86803 * 119.99839 * 2 1 4 4 H 1.48497 * 109.47242 * 266.74091 * 3 2 1 5 5 H 1.48503 * 109.47034 * 26.74030 * 3 2 1 6 6 H 1.48501 * 109.47088 * 146.73677 * 3 2 1 7 7 C 1.39924 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00494 * 342.42558 * 7 2 1 9 9 C 1.41415 * 120.00050 * 162.42480 * 7 2 1 10 10 C 1.40773 * 120.20655 * 330.14223 * 9 7 2 11 11 C 1.37642 * 119.88580 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.31932 * 359.74779 * 11 10 9 13 13 C 1.39246 * 120.42852 * 0.51280 * 12 11 10 14 14 N 1.39957 * 119.94814 * 179.76374 * 13 12 11 15 15 C 1.34775 * 120.00109 * 34.58335 * 14 13 12 16 16 O 1.21590 * 119.99961 * 4.73374 * 15 14 13 17 17 N 1.34777 * 120.00239 * 184.73114 * 15 14 13 18 18 C 1.47235 * 121.34311 * 174.75464 * 17 15 14 19 19 C 1.52785 * 107.88439 * 115.69959 * 18 17 15 20 20 C 1.50609 * 110.84478 * 47.47299 * 19 18 17 21 21 C 1.38985 * 117.60623 * 160.42125 * 20 19 18 22 22 C 1.37908 * 120.58283 * 179.38133 * 21 20 19 23 23 C 1.38258 * 119.82536 * 0.02562 * 22 21 20 24 24 C 1.37959 * 119.71940 * 0.19422 * 23 22 21 25 25 C 1.37668 * 122.87402 * 340.17600 * 20 19 18 26 26 C 1.46686 * 121.33821 * 354.77969 * 17 15 14 27 27 C 1.38276 * 120.10347 * 359.48484 * 13 12 11 28 28 H 0.96999 * 119.99846 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.05835 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.84112 * 179.97438 * 11 10 9 31 31 H 1.07999 * 119.78896 * 180.27193 * 12 11 10 32 32 H 0.97002 * 119.99732 * 214.57954 * 14 13 12 33 33 H 1.09005 * 109.78128 * 356.10210 * 18 17 15 34 34 H 1.09001 * 109.78162 * 235.29341 * 18 17 15 35 35 H 1.09002 * 109.20516 * 287.12773 * 19 18 17 36 36 H 1.08995 * 109.16940 * 167.80183 * 19 18 17 37 37 H 1.07999 * 119.70489 * 359.40477 * 21 20 19 38 38 H 1.07997 * 120.08737 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.14143 * 180.22057 * 23 22 21 40 40 H 1.08003 * 119.74918 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.43498 * 104.20142 * 26 17 15 42 42 H 1.08995 * 109.43804 * 344.32598 * 26 17 15 43 43 H 1.08001 * 120.16128 * 180.23863 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.5588 2.0067 -1.3978 5 1 1.4069 2.6716 0.6300 6 1 3.5037 1.4612 0.7679 7 6 2.0080 -1.2118 0.0005 8 1 1.5059 -2.1252 0.2834 9 6 3.3726 -1.2405 -0.3692 10 6 3.8764 -0.3039 -1.2916 11 6 5.2056 -0.3383 -1.6472 12 6 6.0522 -1.2873 -1.0979 13 6 5.5668 -2.2234 -0.1885 14 7 6.4300 -3.1807 0.3566 15 6 7.7151 -2.8631 0.6097 16 8 8.1031 -1.7225 0.4458 17 7 8.5702 -3.8098 1.0445 18 6 10.0038 -3.5241 1.2211 19 6 10.3298 -3.6610 2.7075 20 6 9.7538 -4.9350 3.2674 21 6 10.2902 -5.4166 4.4557 22 6 9.8004 -6.5710 5.0296 23 6 8.7671 -7.2575 4.4192 24 6 8.2358 -6.7843 3.2372 25 6 8.7299 -5.6237 2.6571 26 6 8.1102 -5.1664 1.3604 27 6 4.2346 -2.2049 0.1813 28 1 -0.4850 0.8400 -0.0004 29 1 3.2208 0.4398 -1.7201 30 1 5.5912 0.3803 -2.3552 31 1 7.0947 -1.3036 -1.3797 32 1 6.1033 -4.0729 0.5522 33 1 10.2215 -2.5095 0.8877 34 1 10.5954 -4.2369 0.6467 35 1 9.9109 -2.8111 3.2462 36 1 11.4120 -3.6695 2.8372 37 1 11.0974 -4.8818 4.9341 38 1 10.2229 -6.9378 5.9533 39 1 8.3773 -8.1601 4.8660 40 1 7.4289 -7.3204 2.7598 41 1 8.4036 -5.8446 0.5592 42 1 7.0245 -5.1680 1.4568 43 1 3.8579 -2.9281 0.8895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466577760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:04 Heat of formation + Delta-G solvation = 27.820935 kcal Electronic energy + Delta-G solvation = -25936.389643 eV Core-core repulsion = 22332.103287 eV Total energy + Delta-G solvation = -3604.286357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.80086 -39.51338 -37.69452 -36.06764 -34.59231 -33.45175 -32.86210 -31.56717 -30.24832 -29.74299 -28.40778 -25.89570 -25.08111 -24.05328 -22.53891 -21.92139 -21.07562 -20.60601 -19.09127 -18.19037 -17.58479 -16.88011 -16.07147 -15.94647 -15.64640 -15.17711 -14.96617 -14.84109 -14.56789 -14.34837 -13.90914 -13.71593 -13.40732 -13.37199 -12.86643 -12.65708 -12.54449 -12.44367 -12.34210 -11.92137 -11.78190 -11.50532 -11.33758 -11.10716 -10.96768 -10.91420 -10.46680 -10.07605 -9.76044 -9.57139 -9.26262 -9.10232 -9.04225 -8.84863 -8.69856 -7.63597 -7.10970 -6.89947 -4.45782 1.06477 1.10371 2.47061 2.66433 2.70982 3.17384 3.26681 3.36496 3.44946 3.49811 4.03220 4.04539 4.34972 4.44525 4.57482 4.62476 4.74128 4.88485 4.95924 5.04550 5.13125 5.27628 5.30416 5.39549 5.43967 5.63534 5.65608 5.72415 5.89264 6.04201 6.15155 6.23334 6.28713 6.35305 6.40203 6.48491 6.56941 6.70457 6.76732 6.79035 7.00824 7.28014 7.41394 7.59348 7.74003 7.90484 8.09384 8.21428 8.39126 8.66479 8.80353 8.87362 10.12569 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.002879 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.733958 B = 9724.328798 C =10399.880300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.248 1.248 7 C -0.451 4.451 8 H 0.089 0.911 9 C 0.108 3.892 10 C -0.252 4.252 11 C -0.066 4.066 12 C -0.229 4.229 13 C 0.184 3.816 14 N -0.681 5.681 15 C 0.709 3.291 16 O -0.566 6.566 17 N -0.633 5.633 18 C 0.132 3.868 19 C -0.100 4.100 20 C -0.064 4.064 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.112 4.112 25 C -0.095 4.095 26 C 0.152 3.848 27 C -0.232 4.232 28 H 0.284 0.716 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.397 0.603 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.394 -12.902 6.549 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.133 4.133 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.221 1.221 6 H -0.172 1.172 7 C -0.480 4.480 8 H 0.107 0.893 9 C 0.104 3.896 10 C -0.272 4.272 11 C -0.085 4.085 12 C -0.251 4.251 13 C 0.092 3.908 14 N -0.329 5.329 15 C 0.412 3.588 16 O -0.442 6.442 17 N -0.372 5.372 18 C 0.008 3.992 19 C -0.138 4.138 20 C -0.065 4.065 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.131 4.131 25 C -0.096 4.096 26 C 0.029 3.971 27 C -0.254 4.254 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.233 0.767 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.418 -11.965 6.431 22.885 hybrid contribution -0.003 0.083 0.340 0.350 sum 18.415 -11.882 6.771 22.938 Atomic orbital electron populations 1.69692 1.08054 1.30199 1.35771 1.26108 0.94679 1.01681 0.90802 0.86364 0.80453 0.79604 0.79492 1.19238 1.22105 1.17169 1.19399 0.92756 0.96033 1.39791 0.89252 1.17467 0.92726 0.90150 0.89230 1.21250 0.95728 1.05332 1.04844 1.20499 0.93453 0.96731 0.97843 1.20350 0.99230 1.01411 1.04075 1.17324 0.88772 0.90786 0.93933 1.42794 1.08696 1.15254 1.66160 1.15749 0.80871 0.84109 0.78110 1.90939 1.76616 1.18024 1.58624 1.47210 1.08423 1.10544 1.71020 1.21423 0.79472 1.03437 0.94828 1.20890 1.00889 0.95285 0.96695 1.19526 0.95620 0.96200 0.95110 1.21190 1.00489 0.96754 0.95505 1.21084 0.97126 0.95616 0.99877 1.21059 0.97059 1.00157 0.95807 1.21055 1.00072 0.95805 0.96136 1.19785 0.97010 0.95905 0.96904 1.20398 0.98954 0.83906 0.93889 1.20714 0.91630 1.06515 1.06509 0.90513 0.87640 0.88502 0.87445 0.76723 0.88112 0.91111 0.89867 0.89640 0.86084 0.86089 0.85910 0.85720 0.90083 0.89347 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.92 13.93 55.55 0.77 -21.14 16 2 C 0.09 2.28 5.41 -17.34 -0.09 2.19 16 3 Si 0.91 21.56 24.66 -169.99 -4.19 17.37 16 4 H -0.27 -6.07 6.28 56.52 0.35 -5.71 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.25 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.45 -12.30 9.57 -37.74 -0.36 -12.66 16 8 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 9 C 0.11 2.78 5.11 -106.85 -0.55 2.23 16 10 C -0.25 -6.27 7.32 -38.84 -0.28 -6.56 16 11 C -0.07 -1.53 10.02 -39.69 -0.40 -1.93 16 12 C -0.23 -5.24 8.66 -39.10 -0.34 -5.58 16 13 C 0.18 4.03 6.25 -83.76 -0.52 3.51 16 14 N -0.68 -11.98 5.24 -14.27 -0.07 -12.05 16 15 C 0.71 12.45 8.06 -86.92 -0.70 11.75 16 16 O -0.57 -12.10 13.58 5.29 0.07 -12.03 16 17 N -0.63 -8.27 2.93 -180.12 -0.53 -8.79 16 18 C 0.13 1.43 6.43 -3.75 -0.02 1.41 16 19 C -0.10 -0.95 5.86 -28.04 -0.16 -1.11 16 20 C -0.06 -0.65 5.76 -104.60 -0.60 -1.25 16 21 C -0.12 -1.08 9.59 -39.43 -0.38 -1.45 16 22 C -0.12 -0.98 10.04 -39.69 -0.40 -1.37 16 23 C -0.12 -1.01 10.05 -39.68 -0.40 -1.40 16 24 C -0.11 -0.98 9.62 -39.46 -0.38 -1.36 16 25 C -0.10 -0.96 5.82 -104.55 -0.61 -1.57 16 26 C 0.15 1.53 6.07 -5.04 -0.03 1.50 16 27 C -0.23 -5.42 9.70 -38.69 -0.38 -5.80 16 28 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 29 H 0.11 2.61 4.44 -52.48 -0.23 2.38 16 30 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 31 H 0.11 2.43 6.47 -52.49 -0.34 2.09 16 32 H 0.40 5.58 6.48 -40.82 -0.26 5.32 16 33 H 0.10 1.23 7.10 -51.93 -0.37 0.87 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.61 8.11 -51.93 -0.42 0.18 16 37 H 0.12 0.85 8.05 -52.49 -0.42 0.43 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.12 0.85 8.05 -52.48 -0.42 0.43 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.84 5.98 -51.93 -0.31 0.53 16 43 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 347.87 15.07 5.24 5.24 Total: -1.00 -32.01 347.87 -10.66 -42.66 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.35 Total: 8.20 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -6.61 Total: -19.46 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.17 Total: -41.99 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.03 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.19 Total: 17.37 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.01 -10.66 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.485 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds