Wall clock time and date at job start Tue Mar 31 2020 13:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86803 * 119.99839 * 2 1 4 4 H 1.48497 * 109.47242 * 266.74091 * 3 2 1 5 5 H 1.48503 * 109.47034 * 26.74030 * 3 2 1 6 6 H 1.48501 * 109.47088 * 146.73677 * 3 2 1 7 7 C 1.39924 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00494 * 342.42558 * 7 2 1 9 9 C 1.41415 * 120.00050 * 162.42480 * 7 2 1 10 10 C 1.40773 * 120.20655 * 330.14223 * 9 7 2 11 11 C 1.37642 * 119.88580 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.31932 * 359.74779 * 11 10 9 13 13 C 1.39246 * 120.42852 * 0.51280 * 12 11 10 14 14 N 1.39957 * 119.94814 * 179.76374 * 13 12 11 15 15 C 1.34775 * 120.00109 * 34.58335 * 14 13 12 16 16 O 1.21590 * 119.99961 * 4.73374 * 15 14 13 17 17 N 1.34777 * 120.00239 * 184.73114 * 15 14 13 18 18 C 1.47235 * 121.34311 * 174.75464 * 17 15 14 19 19 C 1.52785 * 107.88439 * 115.69959 * 18 17 15 20 20 C 1.50609 * 110.84478 * 47.47299 * 19 18 17 21 21 C 1.38985 * 117.60623 * 160.42125 * 20 19 18 22 22 C 1.37908 * 120.58283 * 179.38133 * 21 20 19 23 23 C 1.38258 * 119.82536 * 0.02562 * 22 21 20 24 24 C 1.37959 * 119.71940 * 0.19422 * 23 22 21 25 25 C 1.37668 * 122.87402 * 340.17600 * 20 19 18 26 26 C 1.46686 * 121.33821 * 354.77969 * 17 15 14 27 27 C 1.38276 * 120.10347 * 359.48484 * 13 12 11 28 28 H 0.96999 * 119.99846 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.05835 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.84112 * 179.97438 * 11 10 9 31 31 H 1.07999 * 119.78896 * 180.27193 * 12 11 10 32 32 H 0.97002 * 119.99732 * 214.57954 * 14 13 12 33 33 H 1.09005 * 109.78128 * 356.10210 * 18 17 15 34 34 H 1.09001 * 109.78162 * 235.29341 * 18 17 15 35 35 H 1.09002 * 109.20516 * 287.12773 * 19 18 17 36 36 H 1.08995 * 109.16940 * 167.80183 * 19 18 17 37 37 H 1.07999 * 119.70489 * 359.40477 * 21 20 19 38 38 H 1.07997 * 120.08737 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.14143 * 180.22057 * 23 22 21 40 40 H 1.08003 * 119.74918 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.43498 * 104.20142 * 26 17 15 42 42 H 1.08995 * 109.43804 * 344.32598 * 26 17 15 43 43 H 1.08001 * 120.16128 * 180.23863 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.5588 2.0067 -1.3978 5 1 1.4069 2.6716 0.6300 6 1 3.5037 1.4612 0.7679 7 6 2.0080 -1.2118 0.0005 8 1 1.5059 -2.1252 0.2834 9 6 3.3726 -1.2405 -0.3692 10 6 3.8764 -0.3039 -1.2916 11 6 5.2056 -0.3383 -1.6472 12 6 6.0522 -1.2873 -1.0979 13 6 5.5668 -2.2234 -0.1885 14 7 6.4300 -3.1807 0.3566 15 6 7.7151 -2.8631 0.6097 16 8 8.1031 -1.7225 0.4458 17 7 8.5702 -3.8098 1.0445 18 6 10.0038 -3.5241 1.2211 19 6 10.3298 -3.6610 2.7075 20 6 9.7538 -4.9350 3.2674 21 6 10.2902 -5.4166 4.4557 22 6 9.8004 -6.5710 5.0296 23 6 8.7671 -7.2575 4.4192 24 6 8.2358 -6.7843 3.2372 25 6 8.7299 -5.6237 2.6571 26 6 8.1102 -5.1664 1.3604 27 6 4.2346 -2.2049 0.1813 28 1 -0.4850 0.8400 -0.0004 29 1 3.2208 0.4398 -1.7201 30 1 5.5912 0.3803 -2.3552 31 1 7.0947 -1.3036 -1.3797 32 1 6.1033 -4.0729 0.5522 33 1 10.2215 -2.5095 0.8877 34 1 10.5954 -4.2369 0.6467 35 1 9.9109 -2.8111 3.2462 36 1 11.4120 -3.6695 2.8372 37 1 11.0974 -4.8818 4.9341 38 1 10.2229 -6.9378 5.9533 39 1 8.3773 -8.1601 4.8660 40 1 7.4289 -7.3204 2.7598 41 1 8.4036 -5.8446 0.5592 42 1 7.0245 -5.1680 1.4568 43 1 3.8579 -2.9281 0.8895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466577760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:04 Heat of formation + Delta-G solvation = 10.358742 kcal Electronic energy + Delta-G solvation = -25937.146861 eV Core-core repulsion = 22332.103287 eV Total energy + Delta-G solvation = -3605.043574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93938 -40.55143 -39.31989 -37.15315 -36.20299 -35.14651 -33.87385 -32.43014 -32.12198 -30.76878 -29.80822 -27.06921 -26.77510 -24.95952 -23.44279 -23.08617 -22.84946 -21.90136 -20.35134 -19.68926 -18.97213 -17.89406 -17.70529 -17.05172 -16.98358 -16.45267 -16.13185 -15.97202 -15.82809 -15.57814 -15.27470 -14.91288 -14.57832 -14.47298 -14.26993 -14.06360 -13.86093 -13.62874 -13.30769 -13.22839 -13.08950 -12.96239 -12.81634 -12.48035 -12.36610 -11.97910 -11.82605 -11.68986 -11.54289 -11.39173 -10.95798 -10.90608 -9.92723 -9.61774 -9.54493 -9.51098 -8.90978 -8.83757 -6.50803 0.40224 0.45903 0.69676 0.78393 1.27823 1.40404 1.46565 1.50172 2.02558 2.13903 2.63802 2.75741 2.86382 3.49329 3.60577 3.73105 3.93137 4.06088 4.18613 4.26009 4.29893 4.30745 4.45924 4.54670 4.55705 4.63367 4.64143 4.73572 4.80248 4.85288 4.89465 4.97841 5.01209 5.09815 5.18431 5.27323 5.40200 5.55870 5.56518 5.61226 5.63672 5.69888 5.80898 5.92133 5.98828 6.10826 6.24529 6.39555 6.70779 6.80787 6.85857 7.43747 8.18626 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.002879 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.733958 B = 9724.328798 C =10399.880300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.053 3.947 3 Si 0.962 3.038 4 H -0.252 1.252 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.482 4.482 8 H 0.063 0.937 9 C 0.091 3.909 10 C -0.267 4.267 11 C -0.068 4.068 12 C -0.228 4.228 13 C 0.193 3.807 14 N -0.674 5.674 15 C 0.706 3.294 16 O -0.609 6.609 17 N -0.624 5.624 18 C 0.127 3.873 19 C -0.092 4.092 20 C -0.084 4.084 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.111 4.111 26 C 0.148 3.852 27 C -0.239 4.239 28 H 0.294 0.706 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.414 0.586 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.693 -14.016 7.000 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.162 4.162 3 Si 0.786 3.214 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.511 4.511 8 H 0.081 0.919 9 C 0.088 3.912 10 C -0.287 4.287 11 C -0.086 4.086 12 C -0.249 4.249 13 C 0.099 3.901 14 N -0.324 5.324 15 C 0.408 3.592 16 O -0.488 6.488 17 N -0.361 5.361 18 C 0.005 3.995 19 C -0.130 4.130 20 C -0.084 4.084 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.112 4.112 26 C 0.026 3.974 27 C -0.261 4.261 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.144 0.856 31 H 0.131 0.869 32 H 0.253 0.747 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 20.738 -13.149 6.900 25.506 hybrid contribution -0.509 0.235 0.255 0.616 sum 20.228 -12.914 7.155 25.043 Atomic orbital electron populations 1.69706 1.08920 1.31414 1.37300 1.26680 0.95247 1.03833 0.90392 0.85624 0.78705 0.77062 0.79980 1.17738 1.20321 1.19079 1.19409 0.93877 0.95697 1.42149 0.91893 1.17629 0.92495 0.91325 0.89776 1.21334 0.96629 1.05500 1.05196 1.20818 0.92713 0.97156 0.97954 1.20600 0.99431 1.01241 1.03657 1.17315 0.88755 0.90999 0.93075 1.42620 1.08550 1.15326 1.65880 1.15887 0.80887 0.84301 0.78101 1.90905 1.77311 1.20060 1.60533 1.47247 1.08665 1.10859 1.69320 1.21633 0.78352 1.03249 0.96293 1.20825 1.02425 0.94565 0.95200 1.19678 0.96268 0.96507 0.95983 1.21424 1.00922 0.97168 0.95220 1.21420 0.96960 0.95275 1.00546 1.21397 0.96852 1.00800 0.95573 1.21300 1.00478 0.95544 0.96455 1.19859 0.97505 0.96756 0.97066 1.20638 0.99323 0.82388 0.95039 1.20849 0.92212 1.06321 1.06676 0.89564 0.87718 0.85587 0.86929 0.74690 0.89814 0.88547 0.91831 0.87056 0.84601 0.84028 0.83880 0.84039 0.87792 0.88926 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.67 13.93 21.82 0.30 -46.37 16 2 C 0.05 2.90 5.41 85.25 0.46 3.36 16 3 Si 0.96 44.44 24.66 68.60 1.69 46.13 16 4 H -0.25 -10.97 6.28 99.48 0.62 -10.35 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.48 -27.16 9.57 23.46 0.22 -26.94 16 8 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 9 C 0.09 4.74 5.11 -21.31 -0.11 4.63 16 10 C -0.27 -13.17 7.32 22.75 0.17 -13.01 16 11 C -0.07 -3.03 10.02 22.20 0.22 -2.80 16 12 C -0.23 -10.12 8.66 22.58 0.20 -9.92 16 13 C 0.19 8.26 6.25 38.09 0.24 8.50 16 14 N -0.67 -22.83 5.24 -317.32 -1.66 -24.49 16 15 C 0.71 24.01 8.06 179.05 1.44 25.45 16 16 O -0.61 -25.72 13.58 -4.00 -0.05 -25.77 16 17 N -0.62 -15.28 2.93 -842.03 -2.47 -17.75 16 18 C 0.13 2.57 6.43 86.17 0.55 3.12 16 19 C -0.09 -1.62 5.86 29.75 0.17 -1.44 16 20 C -0.08 -1.53 5.76 -19.85 -0.11 -1.65 16 21 C -0.13 -2.00 9.59 22.37 0.21 -1.79 16 22 C -0.12 -1.70 10.04 22.20 0.22 -1.48 16 23 C -0.13 -1.75 10.05 22.21 0.22 -1.53 16 24 C -0.12 -1.80 9.62 22.35 0.22 -1.58 16 25 C -0.11 -1.99 5.82 -19.82 -0.12 -2.11 16 26 C 0.15 2.65 6.07 85.63 0.52 3.17 16 27 C -0.24 -11.17 9.70 22.85 0.22 -10.94 16 28 H 0.29 14.58 8.30 -92.71 -0.77 13.81 16 29 H 0.11 5.12 4.44 -2.91 -0.01 5.11 16 30 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 31 H 0.11 4.92 6.47 -2.91 -0.02 4.90 16 32 H 0.41 10.94 6.48 -92.71 -0.60 10.34 16 33 H 0.08 2.00 7.10 -2.38 -0.02 1.99 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.32 8.11 -2.39 -0.02 1.31 16 37 H 0.14 1.58 8.05 -2.91 -0.02 1.56 16 38 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 40 H 0.14 1.54 8.05 -2.91 -0.02 1.51 16 41 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.55 5.98 -2.39 -0.01 1.53 16 43 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -70.00 347.87 3.13 -66.87 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.36 Total: 28.35 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 4.96 Total: -26.96 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -3.83 Total: -88.61 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.05 Total: -25.77 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.69 Total: 46.13 kcal Total: -70.00 3.13 -66.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.227 kcal (2) G-P(sol) polarization free energy of solvation -69.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds