Wall clock time and date at job start Tue Mar 31 2020 13:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00082 * 2 1 4 4 H 1.48501 * 109.46824 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46957 * 299.99570 * 3 2 1 6 6 H 1.48499 * 109.47349 * 59.99866 * 3 2 1 7 7 C 1.37877 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99754 * 185.03164 * 7 2 1 9 9 C 1.50701 * 119.99667 * 5.02986 * 7 2 1 10 10 H 1.08992 * 109.47554 * 335.01139 * 9 7 2 11 11 C 1.50709 * 109.46874 * 215.01219 * 9 7 2 12 12 O 1.21276 * 119.99871 * 240.00495 * 11 9 7 13 13 N 1.34773 * 119.99728 * 60.00602 * 11 9 7 14 14 C 1.39408 * 119.99933 * 185.18589 * 13 11 9 15 15 C 1.39035 * 119.68493 * 174.83886 * 14 13 11 16 16 C 1.38295 * 118.92957 * 180.02562 * 15 14 13 17 17 C 1.38943 * 118.65841 * 0.02562 * 16 15 14 18 18 C 1.38076 * 119.46692 * 0.02562 * 17 16 15 19 19 N 1.32168 * 119.68260 * 354.85561 * 14 13 11 20 20 C 1.51492 * 109.60238 * 179.97438 * 18 17 16 21 21 C 1.54595 * 105.22930 * 17.22553 * 20 18 17 22 22 C 1.51255 * 130.57460 * 179.97438 * 17 16 15 23 23 C 1.50694 * 109.47124 * 95.01733 * 9 7 2 24 24 C 1.38238 * 120.00280 * 54.42000 * 23 9 7 25 25 C 1.38230 * 120.00120 * 179.79216 * 24 23 9 26 26 C 1.38236 * 120.00217 * 0.43747 * 25 24 23 27 27 C 1.38231 * 119.99662 * 359.81409 * 26 25 24 28 28 C 1.38236 * 120.00452 * 359.97438 * 27 26 25 29 29 H 0.97006 * 119.99679 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00084 * 5.17826 * 13 11 9 31 31 H 1.08001 * 120.53954 * 0.03773 * 15 14 13 32 32 H 1.07996 * 120.67172 * 179.97438 * 16 15 14 33 33 H 1.09004 * 110.29302 * 136.14736 * 20 18 17 34 34 H 1.09003 * 110.29289 * 258.17580 * 20 18 17 35 35 H 1.09003 * 110.90898 * 215.45387 * 21 20 18 36 36 H 1.08998 * 110.85583 * 91.81023 * 21 20 18 37 37 H 1.08994 * 110.31502 * 281.76030 * 22 17 16 38 38 H 1.09000 * 110.30921 * 43.84126 * 22 17 16 39 39 H 1.08006 * 119.99700 * 359.97438 * 24 23 9 40 40 H 1.08006 * 120.00122 * 180.27314 * 25 24 23 41 41 H 1.08002 * 120.00288 * 179.83588 * 26 25 24 42 42 H 1.08003 * 120.00174 * 180.02562 * 27 26 25 43 43 H 1.07995 * 120.00693 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0826 9 6 1.2552 -2.4967 -0.1133 10 1 0.2366 -2.3629 0.2506 11 6 1.9494 -3.5493 0.7121 12 8 2.3740 -4.5537 0.1814 13 7 2.0984 -3.3744 2.0401 14 6 2.8339 -4.2941 2.7862 15 6 3.0745 -4.0521 4.1340 16 6 3.8064 -4.9747 4.8591 17 6 4.2750 -6.1110 4.2112 18 6 4.0011 -6.2896 2.8697 19 7 3.2960 -5.3877 2.2053 20 6 4.6137 -7.5913 2.3949 21 6 4.9106 -8.3938 3.6824 22 6 5.0884 -7.2752 4.7316 23 6 1.2203 -2.9317 -1.5557 24 6 2.3978 -3.0534 -2.2696 25 6 2.3661 -3.4566 -3.5915 26 6 1.1562 -3.7294 -4.2021 27 6 -0.0216 -3.6026 -3.4897 28 6 0.0104 -3.2037 -2.1665 29 1 -0.4850 0.8401 -0.0004 30 1 1.6939 -2.6084 2.4769 31 1 2.6958 -3.1581 4.6072 32 1 4.0103 -4.8147 5.9075 33 1 3.9079 -8.1338 1.7658 34 1 5.5359 -7.3974 1.8471 35 1 5.8271 -8.9742 3.5763 36 1 4.0702 -9.0382 3.9405 37 1 6.1388 -6.9963 4.8137 38 1 4.7071 -7.6004 5.6995 39 1 3.3427 -2.8363 -1.7938 40 1 3.2863 -3.5559 -4.1480 41 1 1.1313 -4.0418 -5.2356 42 1 -0.9668 -3.8161 -3.9665 43 1 -0.9097 -3.1050 -1.6098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526267797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:10 Heat of formation + Delta-G solvation = 27.581812 kcal Electronic energy + Delta-G solvation = -26317.824428 eV Core-core repulsion = 22713.527703 eV Total energy + Delta-G solvation = -3604.296726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63958 -39.13332 -37.86885 -36.12990 -33.72950 -33.33905 -32.35083 -31.11804 -29.95310 -28.60524 -27.72291 -27.04004 -24.20971 -23.28542 -21.75420 -21.58779 -20.81575 -20.71369 -19.35107 -17.17363 -16.85545 -16.39455 -15.88643 -15.68859 -15.54754 -14.82697 -14.49300 -14.37366 -14.22388 -13.79413 -13.55900 -13.06557 -12.94879 -12.85904 -12.71129 -12.47093 -12.31653 -12.15123 -11.71739 -11.66359 -11.55976 -11.20715 -11.14827 -11.10694 -11.01710 -10.42423 -10.30106 -10.05982 -9.87681 -9.46834 -9.40588 -9.21101 -8.78673 -8.29501 -7.95592 -7.65249 -7.63501 -6.33524 -4.39407 1.37115 1.59736 2.35390 2.38007 3.15562 3.25147 3.28666 3.50710 3.61769 4.16132 4.26494 4.34298 4.53350 4.78735 4.92606 4.94297 5.04300 5.11921 5.19885 5.36363 5.60705 5.65417 5.71144 5.71552 5.77294 5.78212 5.85661 5.92442 6.02349 6.09833 6.13384 6.20063 6.30459 6.41658 6.47618 6.56426 6.70430 6.83267 6.94145 7.13557 7.25937 7.35519 7.42808 7.58254 7.71223 7.85263 7.92246 8.05483 8.55646 8.66994 9.16873 9.27416 10.74895 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012030 B = 0.004136 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.964368 B = 6767.608639 C = 8439.489480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.076 3.924 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.050 3.950 10 H 0.094 0.906 11 C 0.515 3.485 12 O -0.495 6.495 13 N -0.654 5.654 14 C 0.383 3.617 15 C -0.219 4.219 16 C -0.037 4.037 17 C -0.207 4.207 18 C 0.153 3.847 19 N -0.473 5.473 20 C -0.070 4.070 21 C -0.118 4.118 22 C -0.068 4.068 23 C -0.014 4.014 24 C -0.084 4.084 25 C -0.133 4.133 26 C -0.147 4.147 27 C -0.132 4.132 28 C -0.119 4.119 29 H 0.268 0.732 30 H 0.422 0.578 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.473 -9.847 7.583 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.129 4.129 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.029 3.971 10 H 0.112 0.888 11 C 0.305 3.695 12 O -0.366 6.366 13 N -0.299 5.299 14 C 0.150 3.850 15 C -0.243 4.243 16 C -0.062 4.062 17 C -0.211 4.211 18 C 0.013 3.987 19 N -0.188 5.188 20 C -0.108 4.108 21 C -0.156 4.156 22 C -0.106 4.106 23 C -0.015 4.015 24 C -0.102 4.102 25 C -0.152 4.152 26 C -0.165 4.165 27 C -0.150 4.150 28 C -0.137 4.137 29 H 0.077 0.923 30 H 0.260 0.740 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.364 -10.476 6.181 13.294 hybrid contribution 0.301 1.806 1.016 2.094 sum 5.665 -8.670 7.198 12.612 Atomic orbital electron populations 1.69885 1.06011 1.27490 1.48054 1.24956 0.94908 0.99495 0.93550 0.86428 0.80286 0.82899 0.77897 1.19467 1.20607 1.20707 1.20724 0.93347 0.88454 1.52882 0.91871 1.18165 0.99759 0.91585 0.87564 0.88783 1.22035 0.78910 0.87649 0.80952 1.90695 1.46433 1.28979 1.70456 1.43930 1.51137 1.25532 1.09316 1.18499 0.90478 0.88083 0.87917 1.21408 1.06413 1.02652 0.93852 1.20690 0.94341 0.91781 0.99437 1.21237 1.04732 0.98339 0.96749 1.21663 0.92122 0.94515 0.90356 1.66827 1.11855 1.01402 1.38730 1.21008 1.00747 0.91045 0.98004 1.22349 1.02090 0.96979 0.94169 1.20804 0.98918 0.92193 0.98660 1.19993 0.92195 0.92317 0.96969 1.20829 0.98300 0.97709 0.93332 1.20955 0.97041 1.01684 0.95480 1.20809 0.93016 1.03727 0.98965 1.20902 0.97277 1.01892 0.94912 1.20995 0.97738 1.00102 0.94841 0.92259 0.74011 0.84585 0.85299 0.89820 0.89489 0.90308 0.90864 0.90672 0.91121 0.87127 0.87546 0.87656 0.87496 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.74 12.77 55.43 0.71 -22.03 16 2 C 0.08 1.90 5.45 -17.82 -0.10 1.80 16 3 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.52 -12.84 7.55 -34.44 -0.26 -13.10 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.05 1.20 2.45 -94.07 -0.23 0.97 16 10 H 0.09 2.34 6.98 -51.93 -0.36 1.98 16 11 C 0.52 11.83 7.00 -10.98 -0.08 11.75 16 12 O -0.50 -12.49 13.66 5.56 0.08 -12.42 16 13 N -0.65 -12.90 5.27 -11.46 -0.06 -12.96 16 14 C 0.38 7.19 7.42 -154.86 -1.15 6.04 16 15 C -0.22 -3.25 9.95 -39.26 -0.39 -3.64 16 16 C -0.04 -0.48 10.16 -39.30 -0.40 -0.88 16 17 C -0.21 -2.81 6.16 -104.15 -0.64 -3.45 16 18 C 0.15 2.51 7.31 -82.03 -0.60 1.91 16 19 N -0.47 -9.56 7.88 -8.30 -0.07 -9.63 16 20 C -0.07 -0.89 6.78 -26.66 -0.18 -1.07 16 21 C -0.12 -1.08 7.10 -25.16 -0.18 -1.26 16 22 C -0.07 -0.66 6.76 -26.88 -0.18 -0.85 16 23 C -0.01 -0.32 4.31 -104.62 -0.45 -0.77 16 24 C -0.08 -1.90 8.28 -39.58 -0.33 -2.23 16 25 C -0.13 -2.66 10.05 -39.58 -0.40 -3.06 16 26 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 27 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 28 C -0.12 -2.60 9.67 -39.58 -0.38 -2.98 16 29 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.42 7.42 8.66 -40.82 -0.35 7.07 16 31 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.11 2.57 7.91 -52.48 -0.42 2.16 16 40 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 43 H 0.11 2.37 7.95 -52.49 -0.42 1.95 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -30.83 363.71 -11.37 -42.19 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.74 Total: 11.47 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -6.74 Total: -16.90 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.58 Total: -44.62 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.83 -11.37 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526267797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.775 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds