Wall clock time and date at job start Tue Mar 31 2020 13:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00082 * 2 1 4 4 H 1.48501 * 109.46824 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46957 * 299.99570 * 3 2 1 6 6 H 1.48499 * 109.47349 * 59.99866 * 3 2 1 7 7 C 1.37877 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99754 * 185.03164 * 7 2 1 9 9 C 1.50701 * 119.99667 * 5.02986 * 7 2 1 10 10 H 1.08992 * 109.47554 * 335.01139 * 9 7 2 11 11 C 1.50709 * 109.46874 * 215.01219 * 9 7 2 12 12 O 1.21276 * 119.99871 * 240.00495 * 11 9 7 13 13 N 1.34773 * 119.99728 * 60.00602 * 11 9 7 14 14 C 1.39408 * 119.99933 * 185.18589 * 13 11 9 15 15 C 1.39035 * 119.68493 * 174.83886 * 14 13 11 16 16 C 1.38295 * 118.92957 * 180.02562 * 15 14 13 17 17 C 1.38943 * 118.65841 * 0.02562 * 16 15 14 18 18 C 1.38076 * 119.46692 * 0.02562 * 17 16 15 19 19 N 1.32168 * 119.68260 * 354.85561 * 14 13 11 20 20 C 1.51492 * 109.60238 * 179.97438 * 18 17 16 21 21 C 1.54595 * 105.22930 * 17.22553 * 20 18 17 22 22 C 1.51255 * 130.57460 * 179.97438 * 17 16 15 23 23 C 1.50694 * 109.47124 * 95.01733 * 9 7 2 24 24 C 1.38238 * 120.00280 * 54.42000 * 23 9 7 25 25 C 1.38230 * 120.00120 * 179.79216 * 24 23 9 26 26 C 1.38236 * 120.00217 * 0.43747 * 25 24 23 27 27 C 1.38231 * 119.99662 * 359.81409 * 26 25 24 28 28 C 1.38236 * 120.00452 * 359.97438 * 27 26 25 29 29 H 0.97006 * 119.99679 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00084 * 5.17826 * 13 11 9 31 31 H 1.08001 * 120.53954 * 0.03773 * 15 14 13 32 32 H 1.07996 * 120.67172 * 179.97438 * 16 15 14 33 33 H 1.09004 * 110.29302 * 136.14736 * 20 18 17 34 34 H 1.09003 * 110.29289 * 258.17580 * 20 18 17 35 35 H 1.09003 * 110.90898 * 215.45387 * 21 20 18 36 36 H 1.08998 * 110.85583 * 91.81023 * 21 20 18 37 37 H 1.08994 * 110.31502 * 281.76030 * 22 17 16 38 38 H 1.09000 * 110.30921 * 43.84126 * 22 17 16 39 39 H 1.08006 * 119.99700 * 359.97438 * 24 23 9 40 40 H 1.08006 * 120.00122 * 180.27314 * 25 24 23 41 41 H 1.08002 * 120.00288 * 179.83588 * 26 25 24 42 42 H 1.08003 * 120.00174 * 180.02562 * 27 26 25 43 43 H 1.07995 * 120.00693 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0826 9 6 1.2552 -2.4967 -0.1133 10 1 0.2366 -2.3629 0.2506 11 6 1.9494 -3.5493 0.7121 12 8 2.3740 -4.5537 0.1814 13 7 2.0984 -3.3744 2.0401 14 6 2.8339 -4.2941 2.7862 15 6 3.0745 -4.0521 4.1340 16 6 3.8064 -4.9747 4.8591 17 6 4.2750 -6.1110 4.2112 18 6 4.0011 -6.2896 2.8697 19 7 3.2960 -5.3877 2.2053 20 6 4.6137 -7.5913 2.3949 21 6 4.9106 -8.3938 3.6824 22 6 5.0884 -7.2752 4.7316 23 6 1.2203 -2.9317 -1.5557 24 6 2.3978 -3.0534 -2.2696 25 6 2.3661 -3.4566 -3.5915 26 6 1.1562 -3.7294 -4.2021 27 6 -0.0216 -3.6026 -3.4897 28 6 0.0104 -3.2037 -2.1665 29 1 -0.4850 0.8401 -0.0004 30 1 1.6939 -2.6084 2.4769 31 1 2.6958 -3.1581 4.6072 32 1 4.0103 -4.8147 5.9075 33 1 3.9079 -8.1338 1.7658 34 1 5.5359 -7.3974 1.8471 35 1 5.8271 -8.9742 3.5763 36 1 4.0702 -9.0382 3.9405 37 1 6.1388 -6.9963 4.8137 38 1 4.7071 -7.6004 5.6995 39 1 3.3427 -2.8363 -1.7938 40 1 3.2863 -3.5559 -4.1480 41 1 1.1313 -4.0418 -5.2356 42 1 -0.9668 -3.8161 -3.9665 43 1 -0.9097 -3.1050 -1.6098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526267797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:09 Heat of formation + Delta-G solvation = 11.907713 kcal Electronic energy + Delta-G solvation = -26318.504108 eV Core-core repulsion = 22713.527703 eV Total energy + Delta-G solvation = -3604.976406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91515 -40.70706 -39.42242 -37.36440 -35.58868 -34.78075 -33.53322 -32.90583 -31.57982 -29.91651 -28.96102 -28.36827 -25.98540 -24.59686 -23.27151 -22.98353 -22.25860 -21.66232 -20.98491 -18.79527 -18.48914 -17.98462 -17.41256 -16.99432 -16.67153 -16.29692 -15.98430 -15.87647 -15.80733 -15.35805 -14.88003 -14.60655 -14.39422 -14.06222 -14.01891 -13.75758 -13.70168 -13.41897 -13.35118 -13.22053 -12.88325 -12.81381 -12.59031 -12.22848 -12.08229 -12.02889 -11.99197 -11.71806 -11.32598 -11.09939 -10.83571 -10.68050 -10.63649 -9.79653 -9.59316 -9.31144 -8.93933 -8.26482 -6.37888 0.14556 0.44178 0.71071 0.75036 1.38422 1.42524 1.52396 1.90399 2.14765 2.39053 2.93239 3.01809 3.13115 3.25562 3.60640 3.95728 4.09297 4.14399 4.18361 4.20391 4.26365 4.30528 4.36367 4.44127 4.48654 4.59802 4.82738 4.84875 4.90018 4.91874 4.96259 5.01441 5.05053 5.06581 5.20698 5.31166 5.33415 5.38608 5.39832 5.49566 5.59613 5.74286 5.77463 5.87738 5.95161 6.17632 6.32200 6.41856 6.68049 7.18883 7.28966 7.54659 8.81996 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012030 B = 0.004136 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.964368 B = 6767.608639 C = 8439.489480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.039 3.961 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.519 4.519 8 H 0.048 0.952 9 C 0.055 3.945 10 H 0.074 0.926 11 C 0.516 3.484 12 O -0.528 6.528 13 N -0.652 5.652 14 C 0.339 3.661 15 C -0.211 4.211 16 C -0.035 4.035 17 C -0.193 4.193 18 C 0.113 3.887 19 N -0.523 5.523 20 C -0.075 4.075 21 C -0.106 4.106 22 C -0.065 4.065 23 C -0.041 4.041 24 C -0.109 4.109 25 C -0.134 4.134 26 C -0.141 4.141 27 C -0.128 4.128 28 C -0.142 4.142 29 H 0.270 0.730 30 H 0.428 0.572 31 H 0.161 0.839 32 H 0.174 0.826 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.135 0.865 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.693 -10.752 8.673 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.163 4.163 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.556 4.556 8 H 0.066 0.934 9 C 0.034 3.966 10 H 0.092 0.908 11 C 0.304 3.696 12 O -0.401 6.401 13 N -0.298 5.298 14 C 0.109 3.891 15 C -0.234 4.234 16 C -0.061 4.061 17 C -0.196 4.196 18 C -0.026 4.026 19 N -0.239 5.239 20 C -0.113 4.113 21 C -0.144 4.144 22 C -0.102 4.102 23 C -0.042 4.042 24 C -0.128 4.128 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.146 4.146 28 C -0.161 4.161 29 H 0.079 0.921 30 H 0.266 0.734 31 H 0.179 0.821 32 H 0.192 0.808 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.160 0.840 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.597 -11.395 7.322 15.066 hybrid contribution -0.036 1.964 0.710 2.089 sum 6.561 -9.430 8.032 14.017 Atomic orbital electron populations 1.69972 1.06995 1.28165 1.48871 1.25549 0.95552 1.01940 0.93257 0.85555 0.78844 0.79540 0.78066 1.19807 1.20821 1.19382 1.20700 0.92552 0.89408 1.52968 0.93416 1.18035 0.98423 0.91654 0.88510 0.90822 1.21862 0.78612 0.87010 0.82069 1.90650 1.48062 1.29988 1.71443 1.43677 1.51471 1.26197 1.08414 1.18798 0.92438 0.88456 0.89447 1.21726 1.05708 1.03856 0.92126 1.21216 0.92862 0.90722 1.01267 1.21834 1.03032 0.99191 0.95549 1.22361 0.92731 0.95286 0.92192 1.66643 1.13341 1.02735 1.41149 1.21181 1.00073 0.90048 0.99961 1.22380 1.03748 0.96654 0.91576 1.20948 0.99245 0.90366 0.99629 1.20090 0.93325 0.93954 0.96876 1.20816 0.97184 0.99820 0.94965 1.21320 0.99164 1.00374 0.94377 1.21291 0.91883 1.01892 1.00761 1.21320 0.99372 1.00133 0.93742 1.21157 0.97014 1.01433 0.96460 0.92080 0.73384 0.82113 0.80849 0.91260 0.89434 0.87434 0.90187 0.88808 0.88489 0.89199 0.84695 0.83309 0.83988 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.23 12.77 21.45 0.27 -47.95 16 2 C 0.04 2.03 5.45 84.65 0.46 2.49 16 3 Si 0.95 41.43 29.54 68.60 2.03 43.46 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.52 -27.22 7.55 25.60 0.19 -27.02 16 8 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 9 C 0.06 2.81 2.45 -13.03 -0.03 2.78 16 10 H 0.07 3.97 6.98 -2.39 -0.02 3.95 16 11 C 0.52 25.55 7.00 87.66 0.61 26.16 16 12 O -0.53 -28.75 13.66 -3.02 -0.04 -28.79 16 13 N -0.65 -27.57 5.27 -308.57 -1.62 -29.20 16 14 C 0.34 13.35 7.42 132.97 0.99 14.33 16 15 C -0.21 -6.11 9.95 22.47 0.22 -5.89 16 16 C -0.04 -0.82 10.16 22.45 0.23 -0.60 16 17 C -0.19 -4.84 6.16 -19.56 -0.12 -4.97 16 18 C 0.11 3.76 7.31 42.69 0.31 4.07 16 19 N -0.52 -22.30 7.88 -180.18 -1.42 -23.72 16 20 C -0.07 -1.89 6.78 30.64 0.21 -1.68 16 21 C -0.11 -1.64 7.10 31.61 0.22 -1.41 16 22 C -0.06 -1.01 6.76 30.50 0.21 -0.80 16 23 C -0.04 -2.06 4.31 -19.87 -0.09 -2.14 16 24 C -0.11 -5.21 8.28 22.27 0.18 -5.03 16 25 C -0.13 -5.29 10.05 22.27 0.22 -5.07 16 26 C -0.14 -4.95 10.05 22.27 0.22 -4.72 16 27 C -0.13 -4.80 10.05 22.27 0.22 -4.58 16 28 C -0.14 -6.45 9.67 22.27 0.22 -6.23 16 29 H 0.27 13.62 8.31 -92.70 -0.77 12.85 16 30 H 0.43 16.19 8.66 -92.71 -0.80 15.39 16 31 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 32 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 4.51 7.91 -2.91 -0.02 4.49 16 40 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.11 4.84 7.95 -2.91 -0.02 4.81 16 Total: -1.00 -72.40 363.71 3.93 -68.47 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: 0.23 Total: 38.05 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 4.49 Total: -20.31 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -2.77 Total: -100.87 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.04 Total: -28.79 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -72.40 3.93 -68.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526267797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.377 kcal (2) G-P(sol) polarization free energy of solvation -72.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds