Wall clock time and date at job start Tue Mar 31 2020 13:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00109 * 2 1 4 4 H 1.48504 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47236 * 299.99722 * 3 2 1 6 6 H 1.48497 * 109.47435 * 59.99589 * 3 2 1 7 7 C 1.37880 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00083 * 185.05442 * 7 2 1 9 9 C 1.50701 * 119.99797 * 5.05887 * 7 2 1 10 10 H 1.09001 * 109.46933 * 32.97652 * 9 7 2 11 11 C 1.50699 * 109.46982 * 152.97642 * 9 7 2 12 12 O 1.21275 * 120.00338 * 120.00315 * 11 9 7 13 13 N 1.34777 * 119.99872 * 299.99679 * 11 9 7 14 14 C 1.39411 * 119.99700 * 185.02653 * 13 11 9 15 15 C 1.39044 * 119.68146 * 174.33742 * 14 13 11 16 16 C 1.38294 * 118.93019 * 180.25146 * 15 14 13 17 17 C 1.38939 * 118.65381 * 0.05441 * 16 15 14 18 18 C 1.38071 * 119.47258 * 359.93741 * 17 16 15 19 19 N 1.32165 * 119.68717 * 354.60926 * 14 13 11 20 20 C 1.51500 * 109.60649 * 180.02562 * 18 17 16 21 21 C 1.54332 * 105.20606 * 342.77478 * 20 18 17 22 22 C 1.51257 * 130.57093 * 179.97438 * 17 16 15 23 23 C 1.50700 * 109.46994 * 272.97495 * 9 7 2 24 24 C 1.38232 * 120.00174 * 306.71777 * 23 9 7 25 25 C 1.38230 * 120.00169 * 179.80940 * 24 23 9 26 26 C 1.38237 * 119.99678 * 0.40316 * 25 24 23 27 27 C 1.38234 * 120.00116 * 359.85467 * 26 25 24 28 28 C 1.38231 * 119.99747 * 126.99743 * 23 9 7 29 29 H 0.97002 * 119.99929 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00025 * 5.02493 * 13 11 9 31 31 H 1.08007 * 120.53286 * 0.25783 * 15 14 13 32 32 H 1.07992 * 120.67033 * 180.02562 * 16 15 14 33 33 H 1.09003 * 110.29481 * 101.70594 * 20 18 17 34 34 H 1.08996 * 110.29809 * 223.83991 * 20 18 17 35 35 H 1.08999 * 110.82790 * 268.13261 * 21 20 18 36 36 H 1.08997 * 110.99670 * 144.64765 * 21 20 18 37 37 H 1.09003 * 110.31039 * 316.04880 * 22 17 16 38 38 H 1.08992 * 110.31384 * 78.12810 * 22 17 16 39 39 H 1.08006 * 119.99696 * 0.02562 * 24 23 9 40 40 H 1.07997 * 120.00064 * 180.22566 * 25 24 23 41 41 H 1.08002 * 119.99672 * 179.83053 * 26 25 24 42 42 H 1.08001 * 119.99489 * 179.97438 * 27 26 25 43 43 H 1.08004 * 120.00675 * 359.97120 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0814 -1.1959 0.0829 9 6 1.2554 -2.4967 -0.1140 10 1 0.3724 -2.3544 -0.7370 11 6 2.1490 -3.5367 -0.7391 12 8 2.4169 -4.5510 -0.1306 13 7 2.6504 -3.3398 -1.9746 14 6 3.3901 -4.3454 -2.5950 15 6 3.8036 -4.1828 -3.9126 16 6 4.5322 -5.1925 -4.5145 17 6 4.8229 -6.3343 -3.7781 18 6 4.3820 -6.4317 -2.4733 19 7 3.6871 -5.4465 -1.9270 20 6 4.8208 -7.7575 -1.8861 21 6 5.1927 -8.6348 -3.1002 22 6 5.5868 -7.5829 -4.1595 23 6 0.8336 -2.9558 1.2580 24 6 1.7712 -3.0696 2.2674 25 6 1.3836 -3.4870 3.5269 26 6 0.0599 -3.7986 3.7748 27 6 -0.8768 -3.6899 2.7640 28 6 -0.4898 -3.2688 1.5055 29 1 -0.4850 0.8401 -0.0004 30 1 2.4964 -2.4984 -2.4320 31 1 3.5598 -3.2825 -4.4570 32 1 4.8679 -5.0956 -5.5363 33 1 5.6884 -7.6168 -1.2414 34 1 4.0033 -8.2126 -1.3271 35 1 4.3350 -9.2190 -3.4334 36 1 6.0360 -9.2852 -2.8684 37 1 5.2911 -7.9184 -5.1536 38 1 6.6598 -7.3944 -4.1281 39 1 2.8060 -2.8290 2.0728 40 1 2.1155 -3.5724 4.3164 41 1 -0.2425 -4.1273 4.7581 42 1 -1.9109 -3.9338 2.9577 43 1 -1.2218 -3.1838 0.7159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526267798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:12 Heat of formation + Delta-G solvation = 11.940643 kcal Electronic energy + Delta-G solvation = -26311.077307 eV Core-core repulsion = 22706.102329 eV Total energy + Delta-G solvation = -3604.974978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92309 -40.70795 -39.40836 -37.37578 -35.57636 -34.79702 -33.53478 -32.86616 -31.55189 -29.93306 -28.96756 -28.36119 -25.97241 -24.59752 -23.24332 -22.97882 -22.25522 -21.66115 -20.98543 -18.74758 -18.54292 -17.95753 -17.39784 -17.00557 -16.69197 -16.33351 -15.94056 -15.86149 -15.73161 -15.42771 -14.87118 -14.59603 -14.39505 -14.04245 -13.97258 -13.75634 -13.70056 -13.49090 -13.31276 -13.21100 -12.84764 -12.78790 -12.58868 -12.24364 -12.07843 -12.03460 -11.97336 -11.72998 -11.29791 -11.10485 -10.81436 -10.67835 -10.63522 -9.79364 -9.56521 -9.27233 -8.94602 -8.23063 -6.37432 0.14200 0.44194 0.74702 0.78654 1.40226 1.44027 1.54119 1.90384 2.12570 2.40562 2.93957 3.04038 3.12617 3.27539 3.60831 3.95476 4.09492 4.14662 4.19221 4.20803 4.27654 4.30999 4.37628 4.44628 4.49403 4.60054 4.83816 4.84949 4.89973 4.94355 4.96280 5.01607 5.03818 5.06407 5.20789 5.32247 5.34959 5.38597 5.41319 5.49554 5.62049 5.76449 5.79428 5.89085 5.94892 6.20694 6.33006 6.43457 6.68215 7.18131 7.30669 7.53864 8.84624 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.004077 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.547404 B = 6866.350421 C = 8546.828478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.037 3.963 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.286 1.286 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.061 3.939 10 H 0.063 0.937 11 C 0.517 3.483 12 O -0.526 6.526 13 N -0.653 5.653 14 C 0.338 3.662 15 C -0.210 4.210 16 C -0.035 4.035 17 C -0.192 4.192 18 C 0.113 3.887 19 N -0.524 5.524 20 C -0.075 4.075 21 C -0.107 4.107 22 C -0.064 4.064 23 C -0.032 4.032 24 C -0.111 4.111 25 C -0.136 4.136 26 C -0.143 4.143 27 C -0.130 4.130 28 C -0.138 4.138 29 H 0.268 0.732 30 H 0.429 0.571 31 H 0.163 0.837 32 H 0.175 0.825 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.849 -11.272 -8.636 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.166 4.166 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.212 1.212 7 C -0.562 4.562 8 H 0.070 0.930 9 C 0.039 3.961 10 H 0.081 0.919 11 C 0.305 3.695 12 O -0.399 6.399 13 N -0.299 5.299 14 C 0.107 3.893 15 C -0.233 4.233 16 C -0.061 4.061 17 C -0.195 4.195 18 C -0.026 4.026 19 N -0.239 5.239 20 C -0.113 4.113 21 C -0.145 4.145 22 C -0.102 4.102 23 C -0.033 4.033 24 C -0.129 4.129 25 C -0.154 4.154 26 C -0.161 4.161 27 C -0.148 4.148 28 C -0.156 4.156 29 H 0.077 0.923 30 H 0.268 0.732 31 H 0.181 0.819 32 H 0.192 0.808 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.499 -11.880 -7.275 15.821 hybrid contribution 0.151 1.996 -0.668 2.110 sum 7.650 -9.885 -7.943 14.809 Atomic orbital electron populations 1.70046 1.07122 1.28010 1.48342 1.25597 0.95520 1.02042 0.93420 0.85517 0.78933 0.79397 0.77908 1.19447 1.19398 1.21218 1.20746 0.92634 0.89206 1.53578 0.92959 1.17984 0.95148 0.91875 0.91050 0.91863 1.21765 0.79993 0.87250 0.80443 1.90657 1.58492 1.29674 1.61125 1.43708 1.51144 1.17292 1.17795 1.18808 0.92410 0.88017 0.90026 1.21737 1.04865 1.03474 0.93191 1.21222 0.93625 0.90284 1.00945 1.21837 1.03022 0.99054 0.95625 1.22353 0.92251 0.94681 0.93305 1.66636 1.16091 1.01492 1.39690 1.21133 1.01233 0.89337 0.99554 1.22332 1.02942 0.96623 0.92556 1.20952 0.99538 0.89348 1.00330 1.20020 0.93432 0.93275 0.96604 1.20817 0.98421 0.99867 0.93814 1.21303 0.97288 1.00496 0.96340 1.21262 0.92807 1.02091 0.99893 1.21298 1.00343 1.00356 0.92790 1.21100 0.95540 1.00962 0.97996 0.92296 0.73198 0.81925 0.80802 0.89320 0.91362 0.90329 0.87430 0.88527 0.88697 0.89100 0.84797 0.83480 0.84210 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.42 12.98 21.45 0.28 -48.15 16 2 C 0.04 1.90 5.45 84.66 0.46 2.36 16 3 Si 0.96 41.10 29.54 68.60 2.03 43.13 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.52 -27.25 7.38 25.60 0.19 -27.07 16 8 H 0.05 2.78 7.82 -2.91 -0.02 2.76 16 9 C 0.06 3.08 2.25 -13.03 -0.03 3.05 16 10 H 0.06 3.39 7.38 -2.39 -0.02 3.37 16 11 C 0.52 25.35 7.00 87.66 0.61 25.97 16 12 O -0.53 -28.56 13.71 -3.02 -0.04 -28.60 16 13 N -0.65 -27.00 5.31 -308.57 -1.64 -28.64 16 14 C 0.34 13.01 7.42 132.97 0.99 14.00 16 15 C -0.21 -5.85 9.95 22.48 0.22 -5.63 16 16 C -0.04 -0.80 10.16 22.45 0.23 -0.57 16 17 C -0.19 -4.72 6.16 -19.56 -0.12 -4.84 16 18 C 0.11 3.70 7.31 42.69 0.31 4.01 16 19 N -0.52 -22.05 7.88 -180.17 -1.42 -23.47 16 20 C -0.07 -1.87 6.77 30.56 0.21 -1.66 16 21 C -0.11 -1.64 7.08 31.52 0.22 -1.41 16 22 C -0.06 -0.98 6.77 30.50 0.21 -0.77 16 23 C -0.03 -1.62 4.29 -19.87 -0.09 -1.71 16 24 C -0.11 -5.36 8.34 22.27 0.19 -5.18 16 25 C -0.14 -5.52 10.05 22.27 0.22 -5.30 16 26 C -0.14 -5.21 10.05 22.27 0.22 -4.98 16 27 C -0.13 -5.06 10.05 22.27 0.22 -4.83 16 28 C -0.14 -6.38 9.67 22.27 0.22 -6.16 16 29 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 30 H 0.43 15.65 8.51 -92.71 -0.79 14.86 16 31 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 4.60 7.87 -2.91 -0.02 4.58 16 40 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 42 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 43 H 0.11 4.83 7.96 -2.91 -0.02 4.81 16 Total: -1.00 -72.81 363.88 3.93 -68.88 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: 0.24 Total: 37.58 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 4.49 Total: -20.72 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -2.78 Total: -100.26 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.04 Total: -28.60 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -72.81 3.93 -68.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526267798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.820 kcal (2) G-P(sol) polarization free energy of solvation -72.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds