Wall clock time and date at job start Tue Mar 31 2020 12:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38878 * 126.52960 * 2 1 4 4 C 1.46172 * 126.90511 * 0.02562 * 3 2 1 5 5 O 1.21665 * 120.00125 * 180.27752 * 4 3 2 6 6 O 1.34938 * 119.99644 * 0.28916 * 4 3 2 7 7 C 1.37847 * 106.19401 * 180.27460 * 3 2 1 8 8 N 1.33132 * 107.80762 * 359.74522 * 7 3 2 9 9 C 1.31648 * 109.84413 * 359.97438 * 8 7 3 10 10 N 1.38190 * 125.39176 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00542 * 0.03248 * 10 9 8 12 12 O 1.21567 * 119.99573 * 5.01113 * 11 10 9 13 13 N 1.34770 * 120.00501 * 184.73326 * 11 10 9 14 14 C 1.46929 * 120.62856 * 354.76876 * 13 11 10 15 15 C 1.52766 * 109.00478 * 233.58144 * 14 13 11 16 16 C 1.53040 * 109.37969 * 305.58513 * 15 14 13 17 17 C 1.50707 * 109.44465 * 181.25652 * 16 15 14 18 18 H 1.08004 * 119.99469 * 239.93993 * 17 16 15 19 19 C 1.37869 * 120.00193 * 59.94168 * 17 16 15 20 20 N 1.31521 * 120.00192 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00241 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47121 * 59.99532 * 21 19 17 23 23 H 1.48500 * 109.47466 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47072 * 299.99833 * 21 19 17 25 25 C 1.53034 * 109.54078 * 61.24701 * 16 15 14 26 26 C 1.46922 * 120.63427 * 175.04212 * 13 11 10 27 27 H 1.08996 * 109.46980 * 270.16214 * 1 2 3 28 28 H 1.08995 * 109.46845 * 30.15732 * 1 2 3 29 29 H 1.08996 * 109.46886 * 150.15713 * 1 2 3 30 30 H 0.96700 * 114.00108 * 179.97438 * 6 4 3 31 31 H 1.07996 * 126.09384 * 179.76248 * 7 3 2 32 32 H 0.97005 * 119.99772 * 180.02562 * 10 9 8 33 33 H 1.08999 * 109.58661 * 353.41432 * 14 13 11 34 34 H 1.08999 * 109.59083 * 113.84213 * 14 13 11 35 35 H 1.08998 * 109.56179 * 185.55457 * 15 14 13 36 36 H 1.08999 * 109.38806 * 65.51453 * 15 14 13 37 37 H 1.09001 * 109.46432 * 301.21557 * 16 15 14 38 38 H 0.96994 * 120.00199 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.50096 * 178.68292 * 25 16 15 40 40 H 1.08999 * 109.52688 * 58.59483 * 25 16 15 41 41 H 1.09000 * 109.58919 * 246.16178 * 26 13 11 42 42 H 1.09005 * 109.58574 * 6.44004 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2917 1.1160 0.0000 4 6 1.8750 2.5170 0.0005 5 8 2.7114 3.4005 -0.0046 6 8 0.5625 2.8304 0.0070 7 6 3.5842 0.6369 -0.0063 8 7 3.5255 -0.6931 -0.0043 9 6 2.2688 -1.0850 0.0036 10 7 1.8400 -2.3987 0.0073 11 6 2.7404 -3.4015 0.0034 12 8 3.9274 -3.1529 0.0887 13 7 2.3247 -4.6801 -0.0893 14 6 0.8918 -5.0046 -0.0717 15 6 0.6302 -6.0434 1.0174 16 6 1.5456 -7.2501 0.7986 17 6 1.2671 -8.2891 1.8542 18 1 2.0539 -8.6020 2.5246 19 6 0.0081 -8.8399 1.9640 20 7 -0.9502 -8.4585 1.1479 21 14 -0.3370 -10.1282 3.2720 22 1 -0.0795 -9.5507 4.6157 23 1 -1.7557 -10.5577 3.1818 24 1 0.5499 -11.3000 3.0587 25 6 3.0075 -6.8073 0.8923 26 6 3.2959 -5.7767 -0.2038 27 1 -0.3633 0.0029 1.0276 28 1 -0.3633 0.8885 -0.5163 29 1 -0.3633 -0.8914 -0.5114 30 1 0.3851 3.7810 0.0072 31 1 4.4841 1.2341 -0.0117 32 1 0.8909 -2.5991 0.0128 33 1 0.3157 -4.1035 0.1388 34 1 0.5973 -5.4114 -1.0391 35 1 -0.4107 -6.3637 0.9738 36 1 0.8350 -5.6036 1.9935 37 1 1.3573 -7.6748 -0.1874 38 1 -1.8361 -8.8458 1.2254 39 1 3.6586 -7.6713 0.7596 40 1 3.1908 -6.3602 1.8693 41 1 3.2015 -6.2477 -1.1822 42 1 4.3057 -5.3845 -0.0831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574209475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:29 Heat of formation + Delta-G solvation = -36.120725 kcal Electronic energy + Delta-G solvation = -27237.834345 eV Core-core repulsion = 23219.926006 eV Total energy + Delta-G solvation = -4017.908338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.49844 -40.34129 -39.86339 -37.13969 -36.44980 -35.01927 -34.26172 -33.58609 -31.32862 -30.23400 -29.42720 -27.45910 -26.31763 -24.39283 -23.57307 -22.58375 -21.81606 -20.88168 -19.90696 -19.05830 -18.45346 -18.33832 -17.60244 -16.76823 -16.69188 -16.29817 -15.66600 -15.46729 -14.96956 -14.74176 -14.54642 -14.22760 -13.83536 -13.77449 -13.47190 -13.23662 -12.89230 -12.84272 -12.76968 -12.48585 -11.95657 -11.75041 -11.43575 -11.19988 -10.99271 -10.83025 -10.69684 -10.49658 -10.36173 -10.16951 -10.00175 -9.76254 -9.62978 -9.25445 -9.05896 -8.46497 -8.31244 -7.99442 -6.11271 -4.16975 0.81419 1.73267 2.40407 2.67945 2.89104 2.96785 3.25026 3.29725 3.33308 3.48107 3.74328 4.33032 4.34839 4.41093 4.78068 4.90172 5.01672 5.16491 5.28794 5.34318 5.49645 5.66321 5.75614 5.79713 5.90700 6.00126 6.07360 6.11777 6.19510 6.34649 6.53798 6.57742 6.83577 6.85782 6.97956 7.03403 7.18356 7.50405 7.56827 7.69269 7.82264 7.93435 8.03674 8.31845 8.64523 8.86315 9.48592 10.94356 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.002653 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.212094 B =10550.758583 C =11296.613458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.457 5.457 3 C -0.118 4.118 4 C 0.565 3.435 5 O -0.510 6.510 6 O -0.512 6.512 7 C 0.118 3.882 8 N -0.472 5.472 9 C 0.507 3.493 10 N -0.650 5.650 11 C 0.706 3.294 12 O -0.534 6.534 13 N -0.610 5.610 14 C 0.108 3.892 15 C -0.125 4.125 16 C 0.049 3.951 17 C -0.512 4.512 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.125 4.125 26 C 0.130 3.870 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.411 0.589 31 H 0.192 0.808 32 H 0.413 0.587 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.040 0.960 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 17.795 -4.560 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.148 5.148 3 C -0.229 4.229 4 C 0.410 3.590 5 O -0.399 6.399 6 O -0.324 6.324 7 C -0.040 4.040 8 N -0.196 5.196 9 C 0.155 3.845 10 N -0.308 5.308 11 C 0.406 3.594 12 O -0.405 6.405 13 N -0.347 5.347 14 C -0.014 4.014 15 C -0.164 4.164 16 C 0.031 3.969 17 C -0.550 4.550 18 H 0.073 0.927 19 C -0.139 4.139 20 N -0.533 5.533 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.163 4.163 26 C 0.008 3.992 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.269 0.731 31 H 0.209 0.791 32 H 0.253 0.747 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.524 17.102 -4.564 17.709 hybrid contribution -2.013 0.271 0.800 2.183 sum -2.537 17.373 -3.764 17.956 Atomic orbital electron populations 1.22252 0.75395 1.05405 1.04492 1.45094 1.07605 1.04637 1.57486 1.19877 0.91371 0.84063 1.27595 1.19017 0.80348 0.87193 0.72445 1.90987 1.52972 1.48202 1.47732 1.85017 1.26926 1.33851 1.86574 1.23090 0.94871 0.90160 0.95877 1.70909 1.14082 1.10864 1.23724 1.19033 0.85665 0.81199 0.98635 1.41903 1.11082 1.00533 1.77279 1.15576 0.84477 0.80378 0.78965 1.91032 1.13621 1.81737 1.54083 1.47476 1.08558 1.03375 1.75333 1.21899 0.78843 0.98664 1.02018 1.21974 1.05406 0.94606 0.94389 1.18620 0.88265 0.92417 0.97607 1.21176 0.95903 1.21377 1.16506 0.92655 1.24951 0.96323 0.96702 0.95962 1.69808 1.02548 1.43279 1.37633 0.86668 0.77160 0.82057 0.82188 1.20340 1.21324 1.20241 1.22038 1.00672 0.96614 0.97007 1.21688 0.91844 0.86153 0.99521 0.89832 0.87704 0.89693 0.73082 0.79131 0.74680 0.93121 0.91382 0.87573 0.94142 0.95304 0.92910 0.91808 0.92768 0.91943 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 10.46 59.85 0.63 1.07 16 2 N -0.46 -5.07 3.21 -120.91 -0.39 -5.46 16 3 C -0.12 -1.40 6.95 -81.63 -0.57 -1.97 16 4 C 0.56 5.82 8.26 33.92 0.28 6.10 16 5 O -0.51 -6.47 17.64 -19.39 -0.34 -6.81 16 6 O -0.51 -3.34 11.23 -41.14 -0.46 -3.81 16 7 C 0.12 1.57 11.70 -17.13 -0.20 1.37 16 8 N -0.47 -7.76 9.31 -13.59 -0.13 -7.89 16 9 C 0.51 7.23 8.35 -320.86 -2.68 4.55 16 10 N -0.65 -8.96 5.27 -17.24 -0.09 -9.05 16 11 C 0.71 12.21 8.25 -86.92 -0.72 11.49 16 12 O -0.53 -11.08 14.41 5.31 0.08 -11.00 16 13 N -0.61 -10.21 2.98 -178.76 -0.53 -10.74 16 14 C 0.11 1.70 6.36 -3.93 -0.02 1.67 16 15 C -0.13 -2.53 5.14 -26.83 -0.14 -2.67 16 16 C 0.05 1.10 2.07 -91.73 -0.19 0.91 16 17 C -0.51 -13.06 8.56 -34.44 -0.29 -13.35 16 18 H 0.06 1.42 7.74 -52.48 -0.41 1.01 16 19 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 20 N -0.89 -23.38 11.30 55.43 0.63 -22.75 16 21 Si 0.89 20.23 29.54 -169.99 -5.02 15.20 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C -0.13 -2.42 5.30 -26.61 -0.14 -2.56 16 26 C 0.13 2.23 6.44 -3.71 -0.02 2.21 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.10 0.61 6.37 -51.93 -0.33 0.28 16 29 H 0.08 0.43 7.46 -51.93 -0.39 0.04 16 30 H 0.41 0.92 8.98 45.56 0.41 1.33 16 31 H 0.19 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.41 4.36 5.36 -40.82 -0.22 4.14 16 33 H 0.05 0.62 5.65 -51.93 -0.29 0.33 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.11 2.40 6.03 -51.93 -0.31 2.08 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.59 8.31 -40.82 -0.34 6.26 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -33.37 347.31 -9.61 -42.98 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.42 Total: 3.77 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -4.17 Total: 10.32 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.51 Total: -55.88 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.73 Total: -21.62 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.37 -9.61 -42.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574209475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.859 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds