Wall clock time and date at job start Tue Mar 31 2020 12:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38878 * 126.52960 * 2 1 4 4 C 1.46172 * 126.90511 * 0.02562 * 3 2 1 5 5 O 1.21665 * 120.00125 * 180.27752 * 4 3 2 6 6 O 1.34938 * 119.99644 * 0.28916 * 4 3 2 7 7 C 1.37847 * 106.19401 * 180.27460 * 3 2 1 8 8 N 1.33132 * 107.80762 * 359.74522 * 7 3 2 9 9 C 1.31648 * 109.84413 * 359.97438 * 8 7 3 10 10 N 1.38190 * 125.39176 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00542 * 0.03248 * 10 9 8 12 12 O 1.21567 * 119.99573 * 5.01113 * 11 10 9 13 13 N 1.34770 * 120.00501 * 184.73326 * 11 10 9 14 14 C 1.46929 * 120.62856 * 354.76876 * 13 11 10 15 15 C 1.52766 * 109.00478 * 233.58144 * 14 13 11 16 16 C 1.53040 * 109.37969 * 305.58513 * 15 14 13 17 17 C 1.50707 * 109.44465 * 181.25652 * 16 15 14 18 18 H 1.08004 * 119.99469 * 239.93993 * 17 16 15 19 19 C 1.37869 * 120.00193 * 59.94168 * 17 16 15 20 20 N 1.31521 * 120.00192 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00241 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47121 * 59.99532 * 21 19 17 23 23 H 1.48500 * 109.47466 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47072 * 299.99833 * 21 19 17 25 25 C 1.53034 * 109.54078 * 61.24701 * 16 15 14 26 26 C 1.46922 * 120.63427 * 175.04212 * 13 11 10 27 27 H 1.08996 * 109.46980 * 270.16214 * 1 2 3 28 28 H 1.08995 * 109.46845 * 30.15732 * 1 2 3 29 29 H 1.08996 * 109.46886 * 150.15713 * 1 2 3 30 30 H 0.96700 * 114.00108 * 179.97438 * 6 4 3 31 31 H 1.07996 * 126.09384 * 179.76248 * 7 3 2 32 32 H 0.97005 * 119.99772 * 180.02562 * 10 9 8 33 33 H 1.08999 * 109.58661 * 353.41432 * 14 13 11 34 34 H 1.08999 * 109.59083 * 113.84213 * 14 13 11 35 35 H 1.08998 * 109.56179 * 185.55457 * 15 14 13 36 36 H 1.08999 * 109.38806 * 65.51453 * 15 14 13 37 37 H 1.09001 * 109.46432 * 301.21557 * 16 15 14 38 38 H 0.96994 * 120.00199 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.50096 * 178.68292 * 25 16 15 40 40 H 1.08999 * 109.52688 * 58.59483 * 25 16 15 41 41 H 1.09000 * 109.58919 * 246.16178 * 26 13 11 42 42 H 1.09005 * 109.58574 * 6.44004 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2917 1.1160 0.0000 4 6 1.8750 2.5170 0.0005 5 8 2.7114 3.4005 -0.0046 6 8 0.5625 2.8304 0.0070 7 6 3.5842 0.6369 -0.0063 8 7 3.5255 -0.6931 -0.0043 9 6 2.2688 -1.0850 0.0036 10 7 1.8400 -2.3987 0.0073 11 6 2.7404 -3.4015 0.0034 12 8 3.9274 -3.1529 0.0887 13 7 2.3247 -4.6801 -0.0893 14 6 0.8918 -5.0046 -0.0717 15 6 0.6302 -6.0434 1.0174 16 6 1.5456 -7.2501 0.7986 17 6 1.2671 -8.2891 1.8542 18 1 2.0539 -8.6020 2.5246 19 6 0.0081 -8.8399 1.9640 20 7 -0.9502 -8.4585 1.1479 21 14 -0.3370 -10.1282 3.2720 22 1 -0.0795 -9.5507 4.6157 23 1 -1.7557 -10.5577 3.1818 24 1 0.5499 -11.3000 3.0587 25 6 3.0075 -6.8073 0.8923 26 6 3.2959 -5.7767 -0.2038 27 1 -0.3633 0.0029 1.0276 28 1 -0.3633 0.8885 -0.5163 29 1 -0.3633 -0.8914 -0.5114 30 1 0.3851 3.7810 0.0072 31 1 4.4841 1.2341 -0.0117 32 1 0.8909 -2.5991 0.0128 33 1 0.3157 -4.1035 0.1388 34 1 0.5973 -5.4114 -1.0391 35 1 -0.4107 -6.3637 0.9738 36 1 0.8350 -5.6036 1.9935 37 1 1.3573 -7.6748 -0.1874 38 1 -1.8361 -8.8458 1.2254 39 1 3.6586 -7.6713 0.7596 40 1 3.1908 -6.3602 1.8693 41 1 3.2015 -6.2477 -1.1822 42 1 4.3057 -5.3845 -0.0831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574209475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:28 Heat of formation + Delta-G solvation = -56.291194 kcal Electronic energy + Delta-G solvation = -27238.709002 eV Core-core repulsion = 23219.926006 eV Total energy + Delta-G solvation = -4018.782995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.46418 -41.51834 -40.78604 -38.62078 -37.18128 -36.21832 -35.31969 -35.14636 -32.99346 -31.72913 -30.44518 -28.28900 -27.88565 -25.40791 -24.99251 -24.04147 -23.12761 -21.77430 -21.28802 -20.28369 -19.63855 -19.07739 -18.71098 -18.25160 -17.67479 -17.60445 -16.83286 -16.64180 -16.40202 -15.99300 -15.73938 -15.23400 -14.94212 -14.87733 -14.67660 -14.62336 -14.28304 -14.20532 -13.85621 -13.39704 -13.26297 -13.13266 -12.80134 -12.67403 -12.48342 -12.14620 -12.09748 -11.98237 -11.92861 -11.54399 -11.39582 -10.99143 -10.93709 -10.89335 -10.76541 -10.37409 -9.66403 -9.10688 -8.06624 -6.18280 -0.09762 0.70564 1.40469 1.43633 1.45179 1.51522 1.73257 1.98150 2.14922 2.26567 2.45677 2.57143 3.20413 3.50647 3.69395 3.94641 4.07414 4.21541 4.29673 4.35375 4.44329 4.45846 4.57067 4.64624 4.69381 4.74060 4.86876 4.90212 4.98933 5.14849 5.22480 5.30557 5.43530 5.43597 5.46582 5.66600 5.71537 5.90089 6.02656 6.15469 6.42224 6.50317 6.84460 6.90326 6.94563 7.36406 7.49063 8.96487 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.002653 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.212094 B =10550.758583 C =11296.613458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.441 5.441 3 C -0.109 4.109 4 C 0.578 3.422 5 O -0.535 6.535 6 O -0.495 6.495 7 C 0.094 3.906 8 N -0.517 5.517 9 C 0.484 3.516 10 N -0.636 5.636 11 C 0.708 3.292 12 O -0.572 6.572 13 N -0.610 5.610 14 C 0.117 3.883 15 C -0.116 4.116 16 C 0.046 3.954 17 C -0.534 4.534 18 H 0.045 0.955 19 C 0.021 3.979 20 N -0.909 5.909 21 Si 0.944 3.056 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.276 1.276 25 C -0.115 4.115 26 C 0.136 3.864 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.434 0.566 31 H 0.202 0.798 32 H 0.428 0.572 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.009 0.991 38 H 0.262 0.738 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 19.251 -4.847 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.131 5.131 3 C -0.222 4.222 4 C 0.423 3.577 5 O -0.426 6.426 6 O -0.309 6.309 7 C -0.062 4.062 8 N -0.242 5.242 9 C 0.132 3.868 10 N -0.295 5.295 11 C 0.408 3.592 12 O -0.446 6.446 13 N -0.347 5.347 14 C -0.005 4.005 15 C -0.155 4.155 16 C 0.027 3.973 17 C -0.572 4.572 18 H 0.063 0.937 19 C -0.178 4.178 20 N -0.549 5.549 21 Si 0.770 3.230 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.202 1.202 25 C -0.153 4.153 26 C 0.014 3.986 27 H 0.117 0.883 28 H 0.137 0.863 29 H 0.124 0.876 30 H 0.295 0.705 31 H 0.219 0.781 32 H 0.271 0.729 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.027 0.973 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.355 18.596 -4.853 19.362 hybrid contribution -1.539 -0.097 0.903 1.787 sum -3.893 18.498 -3.950 19.312 Atomic orbital electron populations 1.22680 0.72587 1.07246 1.06040 1.45242 1.09005 1.03291 1.55555 1.20119 0.91172 0.85122 1.25764 1.18709 0.81205 0.86086 0.71729 1.90990 1.54078 1.48654 1.48843 1.84958 1.24269 1.36063 1.85566 1.23325 0.96301 0.89538 0.97083 1.70760 1.16127 1.12540 1.24742 1.18932 0.85883 0.81698 1.00313 1.41474 1.11209 0.99907 1.76862 1.15626 0.84364 0.80750 0.78449 1.91009 1.15514 1.82369 1.55734 1.47430 1.08748 1.03259 1.75249 1.21820 0.78726 0.99181 1.00741 1.21725 1.03392 0.94947 0.95403 1.18604 0.90493 0.92723 0.95479 1.21522 0.95887 1.22586 1.17243 0.93705 1.25550 0.96310 0.98315 0.97633 1.69903 1.02631 1.43874 1.38454 0.85842 0.77038 0.80013 0.80080 1.20300 1.20816 1.20185 1.21882 0.98916 0.97331 0.97198 1.21566 0.92029 0.85775 0.99254 0.88348 0.86299 0.87584 0.70455 0.78134 0.72894 0.89124 0.90362 0.89725 0.95477 0.97281 0.92901 0.91570 0.94180 0.90401 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 10.46 127.77 1.34 1.87 16 2 N -0.44 -8.77 3.21 -536.46 -1.72 -10.49 16 3 C -0.11 -2.42 6.95 39.99 0.28 -2.14 16 4 C 0.58 10.53 8.26 69.88 0.58 11.10 16 5 O -0.54 -12.67 17.64 19.29 0.34 -12.33 16 6 O -0.50 -4.64 11.23 -58.54 -0.66 -5.30 16 7 C 0.09 2.50 11.70 84.40 0.99 3.49 16 8 N -0.52 -17.01 9.31 -196.92 -1.83 -18.85 16 9 C 0.48 13.22 8.35 260.81 2.18 15.40 16 10 N -0.64 -16.38 5.27 -326.74 -1.72 -18.10 16 11 C 0.71 23.83 8.25 179.06 1.48 25.30 16 12 O -0.57 -23.86 14.41 -3.93 -0.06 -23.92 16 13 N -0.61 -19.69 2.98 -837.76 -2.49 -22.18 16 14 C 0.12 3.46 6.36 86.22 0.55 4.01 16 15 C -0.12 -4.65 5.14 30.53 0.16 -4.49 16 16 C 0.05 2.05 2.07 -11.51 -0.02 2.03 16 17 C -0.53 -27.67 8.56 25.60 0.22 -27.45 16 18 H 0.04 2.35 7.74 -2.91 -0.02 2.32 16 19 C 0.02 1.09 5.30 84.65 0.45 1.54 16 20 N -0.91 -47.61 11.30 21.45 0.24 -47.36 16 21 Si 0.94 41.48 29.54 68.60 2.03 43.51 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 25 C -0.11 -4.49 5.30 30.67 0.16 -4.32 16 26 C 0.14 4.61 6.44 86.36 0.56 5.17 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.12 0.87 6.37 -2.39 -0.02 0.86 16 29 H 0.11 0.63 7.46 -2.39 -0.02 0.61 16 30 H 0.43 0.26 8.98 -74.06 -0.67 -0.40 16 31 H 0.20 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.43 7.75 5.36 -92.70 -0.50 7.25 16 33 H 0.09 1.94 5.65 -2.39 -0.01 1.92 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 3.80 6.03 -2.39 -0.01 3.79 16 36 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.26 13.15 8.31 -92.71 -0.77 12.38 16 39 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.08 2.83 6.99 -2.38 -0.02 2.82 16 Total: -1.00 -73.65 347.31 2.96 -70.69 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -0.07 Total: 12.83 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 8.90 Total: 31.51 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -7.53 Total: -116.99 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -0.37 Total: -41.55 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -73.65 2.96 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574209475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.403 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds