Wall clock time and date at job start Tue Mar 31 2020 13:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00462 * 2 1 4 4 H 1.48500 * 109.46968 * 270.00601 * 3 2 1 5 5 H 1.48505 * 109.46828 * 29.99971 * 3 2 1 6 6 H 1.48491 * 109.47290 * 150.00240 * 3 2 1 7 7 C 1.37878 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99786 * 185.00817 * 7 2 1 9 9 C 1.50703 * 120.00070 * 5.00584 * 7 2 1 10 10 H 1.09005 * 109.46599 * 335.00875 * 9 7 2 11 11 C 1.50697 * 109.47161 * 215.00730 * 9 7 2 12 12 O 1.21294 * 120.00046 * 239.99639 * 11 9 7 13 13 N 1.34778 * 119.99992 * 59.99907 * 11 9 7 14 14 C 1.40156 * 119.99984 * 184.61516 * 13 11 9 15 15 C 1.38871 * 120.15207 * 324.90970 * 14 13 11 16 16 C 1.37785 * 120.14881 * 180.02562 * 15 14 13 17 17 C 1.39662 * 120.37927 * 359.97086 * 16 15 14 18 18 C 1.38598 * 119.14486 * 0.03141 * 17 16 15 19 19 C 1.38144 * 120.53724 * 359.97438 * 18 17 16 20 20 C 1.51229 * 108.55730 * 179.97438 * 18 17 16 21 21 C 1.53737 * 104.57852 * 0.02562 * 20 18 17 22 22 N 1.39827 * 129.25229 * 179.97438 * 17 16 15 23 23 C 1.50703 * 109.46908 * 95.00565 * 9 7 2 24 24 C 1.38231 * 119.99892 * 54.62278 * 23 9 7 25 25 C 1.38234 * 119.99514 * 179.80500 * 24 23 9 26 26 C 1.38235 * 120.00192 * 0.40072 * 25 24 23 27 27 C 1.38230 * 119.99925 * 359.85475 * 26 25 24 28 28 C 1.38233 * 119.99565 * 234.89347 * 23 9 7 29 29 H 0.97004 * 119.99325 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00241 * 4.61627 * 13 11 9 31 31 H 1.07995 * 119.92388 * 0.04179 * 15 14 13 32 32 H 1.08002 * 119.80850 * 180.02562 * 16 15 14 33 33 H 1.07999 * 119.94902 * 180.02562 * 19 18 17 34 34 H 1.09004 * 110.41404 * 118.77250 * 20 18 17 35 35 H 1.08999 * 110.41647 * 241.22354 * 20 18 17 36 36 H 1.09003 * 110.29470 * 241.06884 * 21 20 18 37 37 H 1.08993 * 110.29902 * 118.93237 * 21 20 18 38 38 H 0.96992 * 124.96862 * 359.76942 * 22 17 16 39 39 H 1.07998 * 119.99813 * 359.97438 * 24 23 9 40 40 H 1.08001 * 120.00030 * 180.22531 * 25 24 23 41 41 H 1.08003 * 119.99953 * 179.83079 * 26 25 24 42 42 H 1.08003 * 120.00228 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.00693 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1959 0.0811 9 6 1.2553 -2.4967 -0.1150 10 1 0.2367 -2.3631 0.2495 11 6 1.9499 -3.5498 0.7093 12 8 2.3742 -4.5540 0.1776 13 7 2.0995 -3.3758 2.0374 14 6 2.8293 -4.3074 2.7884 15 6 2.7847 -5.6561 2.4604 16 6 3.5017 -6.5720 3.1990 17 6 4.2787 -6.1533 4.2815 18 6 4.3182 -4.8057 4.6028 19 6 3.5998 -3.8864 3.8632 20 6 5.2219 -4.6231 5.8016 21 6 5.7072 -6.0420 6.1400 22 7 5.0705 -6.9127 5.1483 23 6 1.2197 -2.9305 -1.5578 24 6 2.3971 -3.0555 -2.2711 25 6 2.3647 -3.4574 -3.5934 26 6 1.1543 -3.7263 -4.2046 27 6 -0.0234 -3.5961 -3.4927 28 6 0.0092 -3.1981 -2.1693 29 1 -0.4849 0.8401 0.0004 30 1 1.7022 -2.6059 2.4736 31 1 2.1868 -5.9878 1.6244 32 1 3.4634 -7.6195 2.9389 33 1 3.6378 -2.8385 4.1217 34 1 6.0668 -3.9833 5.5469 35 1 4.6637 -4.2022 6.6379 36 1 5.3903 -6.3203 7.1452 37 1 6.7923 -6.1008 6.0550 38 1 5.1796 -7.8754 5.1020 39 1 3.3424 -2.8419 -1.7946 40 1 3.2848 -3.5586 -4.1497 41 1 1.1288 -4.0376 -5.2385 42 1 -0.9691 -3.8058 -3.9704 43 1 -0.9109 -3.0966 -1.6132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580045063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:04 Heat of formation + Delta-G solvation = 21.411842 kcal Electronic energy + Delta-G solvation = -26129.647856 eV Core-core repulsion = 22525.083580 eV Total energy + Delta-G solvation = -3604.564276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28924 -39.20969 -37.93585 -36.02779 -33.73070 -33.18384 -31.72177 -31.12273 -29.95236 -28.60771 -28.35918 -26.96489 -24.01532 -22.77293 -21.92957 -21.67326 -21.59389 -20.33073 -19.14526 -17.25827 -16.91985 -16.69938 -16.14494 -15.76975 -15.57747 -15.16534 -14.51010 -14.26931 -14.05646 -13.86380 -13.49556 -13.29816 -13.02027 -12.61111 -12.51289 -12.38163 -12.33222 -12.19149 -12.10975 -11.94319 -11.66456 -11.56209 -11.07537 -11.04037 -10.77026 -10.40433 -10.28764 -10.25868 -10.00443 -9.46985 -8.84310 -8.76154 -8.60564 -8.41549 -7.96079 -7.64539 -6.78561 -6.30746 -4.36454 1.70260 1.85171 2.35676 2.38414 3.19438 3.26912 3.28572 3.46951 3.58972 3.96241 4.20913 4.29561 4.67234 4.76834 4.81982 5.02337 5.07198 5.25180 5.43360 5.52861 5.71090 5.72916 5.76547 5.78252 5.84821 5.87196 5.94396 6.12623 6.21898 6.35954 6.38680 6.48202 6.57200 6.64351 6.83996 6.84434 6.93100 6.96985 7.14219 7.18275 7.35614 7.42337 7.58590 7.61177 7.73778 7.91258 7.92767 8.04249 8.29519 8.68266 9.15314 9.29795 10.77714 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003835 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.242724 B = 7300.024347 C = 8905.498280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.076 3.924 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.050 3.950 10 H 0.095 0.905 11 C 0.528 3.472 12 O -0.550 6.550 13 N -0.668 5.668 14 C 0.117 3.883 15 C -0.079 4.079 16 C -0.162 4.162 17 C 0.165 3.835 18 C -0.158 4.158 19 C -0.094 4.094 20 C -0.081 4.081 21 C 0.123 3.877 22 N -0.754 5.754 23 C -0.013 4.013 24 C -0.084 4.084 25 C -0.134 4.134 26 C -0.148 4.148 27 C -0.132 4.132 28 C -0.119 4.119 29 H 0.268 0.732 30 H 0.414 0.586 31 H 0.141 0.859 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.407 0.593 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.628 -8.471 8.489 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.129 4.129 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.029 3.971 10 H 0.113 0.887 11 C 0.319 3.681 12 O -0.428 6.428 13 N -0.312 5.312 14 C 0.021 3.979 15 C -0.100 4.100 16 C -0.185 4.185 17 C 0.064 3.936 18 C -0.164 4.164 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.002 4.002 22 N -0.390 5.390 23 C -0.014 4.014 24 C -0.102 4.102 25 C -0.152 4.152 26 C -0.166 4.166 27 C -0.150 4.150 28 C -0.137 4.137 29 H 0.078 0.922 30 H 0.250 0.750 31 H 0.159 0.841 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.244 0.756 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.822 -8.972 8.177 13.463 hybrid contribution 0.358 1.011 0.065 1.075 sum 6.179 -7.961 8.242 13.019 Atomic orbital electron populations 1.69874 1.06010 1.27546 1.48075 1.24950 0.94902 0.99476 0.93585 0.86482 0.79867 0.82587 0.78554 1.20297 1.20997 1.19584 1.20683 0.93318 0.88443 1.52840 0.91878 1.18142 0.99809 0.91659 0.87516 0.88729 1.21847 0.77898 0.87225 0.81134 1.90569 1.50194 1.30439 1.71600 1.43545 1.53106 1.26314 1.08275 1.17549 0.96798 0.89364 0.94216 1.21004 0.98897 0.91026 0.99047 1.20197 1.02001 0.99491 0.96816 1.18283 0.92864 0.90854 0.91616 1.19513 1.03846 0.92663 1.00328 1.20082 0.96345 0.98825 0.96279 1.20970 0.98382 0.96382 0.96107 1.21668 0.96874 0.89730 0.91922 1.44605 1.52953 1.07944 1.33457 1.20018 0.92143 0.92159 0.97083 1.20832 0.98347 0.97726 0.93304 1.20961 0.97029 1.01743 0.95503 1.20807 0.93027 1.03810 0.98953 1.20906 0.97259 1.01912 0.94937 1.21001 0.97766 1.00153 0.94824 0.92245 0.74992 0.84144 0.86726 0.85947 0.90126 0.90131 0.92160 0.92140 0.75567 0.87091 0.87570 0.87690 0.87515 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.78 12.77 55.43 0.71 -22.07 16 2 C 0.08 1.89 5.45 -17.82 -0.10 1.80 16 3 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.52 -12.73 7.55 -34.44 -0.26 -12.99 16 8 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 9 C 0.05 1.16 2.45 -94.07 -0.23 0.93 16 10 H 0.09 2.33 6.98 -51.93 -0.36 1.97 16 11 C 0.53 11.65 6.89 -10.99 -0.08 11.58 16 12 O -0.55 -13.04 12.84 5.55 0.07 -12.97 16 13 N -0.67 -12.80 5.23 -9.83 -0.05 -12.85 16 14 C 0.12 2.09 6.30 -83.61 -0.53 1.56 16 15 C -0.08 -1.40 8.69 -39.51 -0.34 -1.74 16 16 C -0.16 -2.47 10.06 -39.22 -0.39 -2.87 16 17 C 0.17 2.34 7.04 -83.55 -0.59 1.76 16 18 C -0.16 -2.25 6.22 -104.26 -0.65 -2.89 16 19 C -0.09 -1.47 9.96 -39.41 -0.39 -1.86 16 20 C -0.08 -0.84 6.94 -27.24 -0.19 -1.03 16 21 C 0.12 1.11 7.96 -3.64 -0.03 1.08 16 22 N -0.75 -8.24 6.54 -58.07 -0.38 -8.62 16 23 C -0.01 -0.30 4.31 -104.62 -0.45 -0.75 16 24 C -0.08 -1.88 8.27 -39.59 -0.33 -2.20 16 25 C -0.13 -2.64 10.05 -39.58 -0.40 -3.04 16 26 C -0.15 -2.73 10.05 -39.59 -0.40 -3.13 16 27 C -0.13 -2.53 10.05 -39.58 -0.40 -2.92 16 28 C -0.12 -2.57 9.67 -39.58 -0.38 -2.95 16 29 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.41 7.40 8.78 -40.82 -0.36 7.04 16 31 H 0.14 2.71 6.23 -52.49 -0.33 2.39 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.41 3.56 8.96 -40.82 -0.37 3.20 16 39 H 0.11 2.53 7.91 -52.49 -0.42 2.11 16 40 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 43 H 0.11 2.34 7.95 -52.49 -0.42 1.92 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -29.07 361.94 -10.95 -40.02 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -5.60 Total: 15.93 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -6.13 Total: -19.68 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.28 Total: -43.54 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.07 -10.95 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580045063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.430 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds