Wall clock time and date at job start Tue Mar 31 2020 13:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00462 * 2 1 4 4 H 1.48500 * 109.46968 * 270.00601 * 3 2 1 5 5 H 1.48505 * 109.46828 * 29.99971 * 3 2 1 6 6 H 1.48491 * 109.47290 * 150.00240 * 3 2 1 7 7 C 1.37878 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99786 * 185.00817 * 7 2 1 9 9 C 1.50703 * 120.00070 * 5.00584 * 7 2 1 10 10 H 1.09005 * 109.46599 * 335.00875 * 9 7 2 11 11 C 1.50697 * 109.47161 * 215.00730 * 9 7 2 12 12 O 1.21294 * 120.00046 * 239.99639 * 11 9 7 13 13 N 1.34778 * 119.99992 * 59.99907 * 11 9 7 14 14 C 1.40156 * 119.99984 * 184.61516 * 13 11 9 15 15 C 1.38871 * 120.15207 * 324.90970 * 14 13 11 16 16 C 1.37785 * 120.14881 * 180.02562 * 15 14 13 17 17 C 1.39662 * 120.37927 * 359.97086 * 16 15 14 18 18 C 1.38598 * 119.14486 * 0.03141 * 17 16 15 19 19 C 1.38144 * 120.53724 * 359.97438 * 18 17 16 20 20 C 1.51229 * 108.55730 * 179.97438 * 18 17 16 21 21 C 1.53737 * 104.57852 * 0.02562 * 20 18 17 22 22 N 1.39827 * 129.25229 * 179.97438 * 17 16 15 23 23 C 1.50703 * 109.46908 * 95.00565 * 9 7 2 24 24 C 1.38231 * 119.99892 * 54.62278 * 23 9 7 25 25 C 1.38234 * 119.99514 * 179.80500 * 24 23 9 26 26 C 1.38235 * 120.00192 * 0.40072 * 25 24 23 27 27 C 1.38230 * 119.99925 * 359.85475 * 26 25 24 28 28 C 1.38233 * 119.99565 * 234.89347 * 23 9 7 29 29 H 0.97004 * 119.99325 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00241 * 4.61627 * 13 11 9 31 31 H 1.07995 * 119.92388 * 0.04179 * 15 14 13 32 32 H 1.08002 * 119.80850 * 180.02562 * 16 15 14 33 33 H 1.07999 * 119.94902 * 180.02562 * 19 18 17 34 34 H 1.09004 * 110.41404 * 118.77250 * 20 18 17 35 35 H 1.08999 * 110.41647 * 241.22354 * 20 18 17 36 36 H 1.09003 * 110.29470 * 241.06884 * 21 20 18 37 37 H 1.08993 * 110.29902 * 118.93237 * 21 20 18 38 38 H 0.96992 * 124.96862 * 359.76942 * 22 17 16 39 39 H 1.07998 * 119.99813 * 359.97438 * 24 23 9 40 40 H 1.08001 * 120.00030 * 180.22531 * 25 24 23 41 41 H 1.08003 * 119.99953 * 179.83079 * 26 25 24 42 42 H 1.08003 * 120.00228 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.00693 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1959 0.0811 9 6 1.2553 -2.4967 -0.1150 10 1 0.2367 -2.3631 0.2495 11 6 1.9499 -3.5498 0.7093 12 8 2.3742 -4.5540 0.1776 13 7 2.0995 -3.3758 2.0374 14 6 2.8293 -4.3074 2.7884 15 6 2.7847 -5.6561 2.4604 16 6 3.5017 -6.5720 3.1990 17 6 4.2787 -6.1533 4.2815 18 6 4.3182 -4.8057 4.6028 19 6 3.5998 -3.8864 3.8632 20 6 5.2219 -4.6231 5.8016 21 6 5.7072 -6.0420 6.1400 22 7 5.0705 -6.9127 5.1483 23 6 1.2197 -2.9305 -1.5578 24 6 2.3971 -3.0555 -2.2711 25 6 2.3647 -3.4574 -3.5934 26 6 1.1543 -3.7263 -4.2046 27 6 -0.0234 -3.5961 -3.4927 28 6 0.0092 -3.1981 -2.1693 29 1 -0.4849 0.8401 0.0004 30 1 1.7022 -2.6059 2.4736 31 1 2.1868 -5.9878 1.6244 32 1 3.4634 -7.6195 2.9389 33 1 3.6378 -2.8385 4.1217 34 1 6.0668 -3.9833 5.5469 35 1 4.6637 -4.2022 6.6379 36 1 5.3903 -6.3203 7.1452 37 1 6.7923 -6.1008 6.0550 38 1 5.1796 -7.8754 5.1020 39 1 3.3424 -2.8419 -1.7946 40 1 3.2848 -3.5586 -4.1497 41 1 1.1288 -4.0376 -5.2385 42 1 -0.9691 -3.8058 -3.9704 43 1 -0.9109 -3.0966 -1.6132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580045063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:03 Heat of formation + Delta-G solvation = 5.674706 kcal Electronic energy + Delta-G solvation = -26130.330269 eV Core-core repulsion = 22525.083580 eV Total energy + Delta-G solvation = -3605.246689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58439 -40.65981 -39.46578 -37.32244 -35.56548 -34.62006 -32.89394 -32.79640 -31.54809 -29.82756 -29.56986 -28.51078 -25.84097 -23.88255 -23.38889 -23.18542 -22.65086 -21.79080 -20.71924 -18.75204 -18.31656 -18.22871 -17.70633 -17.29036 -16.59645 -16.37209 -16.17477 -15.87569 -15.69270 -15.25115 -14.83909 -14.68685 -14.54141 -14.09513 -14.03604 -13.61520 -13.59082 -13.54725 -13.33789 -13.26525 -12.89917 -12.87247 -12.76792 -12.73761 -12.17967 -11.96715 -11.95643 -11.67811 -11.47626 -11.28052 -10.71432 -10.41748 -10.01951 -9.65337 -9.56893 -9.28851 -8.23183 -7.92875 -6.33688 0.48310 0.57417 0.74169 0.78653 1.42197 1.45046 1.53375 1.91046 2.40627 2.42807 2.64571 2.95169 3.06751 3.25766 3.76216 3.85166 4.14027 4.21256 4.29243 4.30752 4.34604 4.41938 4.48488 4.53241 4.56381 4.63882 4.80775 4.86488 4.93864 4.95365 5.09798 5.10951 5.14896 5.25025 5.34139 5.43260 5.46833 5.57884 5.63482 5.67144 5.77472 5.81048 5.91002 5.96845 6.21346 6.34110 6.39229 6.68283 6.76016 7.04540 7.32947 7.49335 8.85490 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003835 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.242724 B = 7300.024347 C = 8905.498280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.038 3.962 3 Si 0.953 3.047 4 H -0.282 1.282 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.051 0.949 9 C 0.053 3.947 10 H 0.073 0.927 11 C 0.526 3.474 12 O -0.573 6.573 13 N -0.660 5.660 14 C 0.082 3.918 15 C -0.096 4.096 16 C -0.170 4.170 17 C 0.171 3.829 18 C -0.166 4.166 19 C -0.094 4.094 20 C -0.081 4.081 21 C 0.120 3.880 22 N -0.745 5.745 23 C -0.040 4.040 24 C -0.109 4.109 25 C -0.135 4.135 26 C -0.142 4.142 27 C -0.129 4.129 28 C -0.143 4.143 29 H 0.269 0.731 30 H 0.416 0.584 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.419 0.581 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -9.066 9.142 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.164 4.164 3 Si 0.779 3.221 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.032 3.968 10 H 0.091 0.909 11 C 0.317 3.683 12 O -0.453 6.453 13 N -0.303 5.303 14 C -0.014 4.014 15 C -0.117 4.117 16 C -0.193 4.193 17 C 0.067 3.933 18 C -0.171 4.171 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.004 4.004 22 N -0.380 5.380 23 C -0.041 4.041 24 C -0.128 4.128 25 C -0.153 4.153 26 C -0.160 4.160 27 C -0.147 4.147 28 C -0.161 4.161 29 H 0.078 0.922 30 H 0.253 0.747 31 H 0.133 0.867 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.258 0.742 39 H 0.111 0.889 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.473 -9.595 8.890 15.065 hybrid contribution -0.087 1.059 -0.072 1.065 sum 7.386 -8.536 8.818 14.324 Atomic orbital electron populations 1.69968 1.07040 1.28111 1.49076 1.25552 0.95530 1.01966 0.93387 0.85621 0.78992 0.79370 0.78132 1.20799 1.20230 1.19090 1.20712 0.92698 0.89382 1.52664 0.93090 1.18017 0.98468 0.91782 0.88539 0.90898 1.21620 0.77937 0.86724 0.82054 1.90536 1.51362 1.31047 1.72310 1.43356 1.52905 1.26605 1.07465 1.17749 0.98719 0.89193 0.95710 1.20866 0.99922 0.91699 0.99219 1.20294 1.02014 0.99854 0.97172 1.18441 0.92171 0.91542 0.91181 1.19974 1.03561 0.92378 1.01189 1.20219 0.95876 0.99881 0.95467 1.21131 0.98076 0.97846 0.94792 1.21920 0.97909 0.88246 0.92343 1.44762 1.51726 1.08783 1.32755 1.20097 0.93276 0.93822 0.96925 1.20839 0.97316 0.99719 0.94888 1.21327 0.99104 1.00425 0.94451 1.21283 0.91947 1.02009 1.00715 1.21313 0.99323 1.00220 0.93799 1.21158 0.97073 1.01457 0.96405 0.92205 0.74692 0.86737 0.85099 0.84789 0.89010 0.88403 0.89738 0.90145 0.74215 0.88856 0.84697 0.83454 0.84114 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.38 12.77 21.45 0.27 -48.11 16 2 C 0.04 1.94 5.45 84.66 0.46 2.40 16 3 Si 0.95 41.27 29.54 68.60 2.03 43.29 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.52 -26.73 7.55 25.60 0.19 -26.53 16 8 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 9 C 0.05 2.65 2.45 -13.03 -0.03 2.62 16 10 H 0.07 3.87 6.98 -2.38 -0.02 3.86 16 11 C 0.53 24.89 6.89 87.66 0.60 25.50 16 12 O -0.57 -29.03 12.84 -3.07 -0.04 -29.07 16 13 N -0.66 -27.02 5.23 -303.38 -1.59 -28.61 16 14 C 0.08 3.06 6.30 38.09 0.24 3.30 16 15 C -0.10 -3.60 8.69 22.31 0.19 -3.41 16 16 C -0.17 -5.22 10.06 22.51 0.23 -4.99 16 17 C 0.17 4.57 7.04 38.30 0.27 4.84 16 18 C -0.17 -4.44 6.22 -19.63 -0.12 -4.56 16 19 C -0.09 -2.93 9.96 22.38 0.22 -2.71 16 20 C -0.08 -1.42 6.94 30.26 0.21 -1.21 16 21 C 0.12 1.66 7.96 86.62 0.69 2.35 16 22 N -0.75 -13.99 6.54 -337.62 -2.21 -16.20 16 23 C -0.04 -1.95 4.31 -19.87 -0.09 -2.03 16 24 C -0.11 -5.05 8.27 22.27 0.18 -4.87 16 25 C -0.14 -5.19 10.05 22.27 0.22 -4.96 16 26 C -0.14 -4.89 10.05 22.27 0.22 -4.66 16 27 C -0.13 -4.75 10.05 22.27 0.22 -4.52 16 28 C -0.14 -6.33 9.67 22.27 0.22 -6.11 16 29 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 30 H 0.42 15.99 8.78 -92.71 -0.81 15.18 16 31 H 0.11 4.82 6.23 -2.91 -0.02 4.80 16 32 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.42 6.01 8.96 -92.71 -0.83 5.18 16 39 H 0.09 4.51 7.91 -2.91 -0.02 4.48 16 40 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 41 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 42 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.11 4.74 7.95 -2.91 -0.02 4.72 16 Total: -1.00 -65.71 361.94 2.02 -63.70 By element: Atomic # 1 Polarization: 45.16 SS G_CDS: -0.59 Total: 44.57 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 4.14 Total: -29.57 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -3.52 Total: -92.91 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.04 Total: -29.07 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -65.71 2.02 -63.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580045063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.370 kcal (2) G-P(sol) polarization free energy of solvation -65.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds