Wall clock time and date at job start Tue Mar 31 2020 13:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99615 * 2 1 4 4 H 1.48495 * 109.47162 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47170 * 300.00366 * 3 2 1 6 6 H 1.48504 * 109.47144 * 60.00201 * 3 2 1 7 7 C 1.37875 * 120.00670 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99419 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.46966 * 180.02562 * 9 7 2 11 11 C 1.38281 * 119.92723 * 89.99844 * 10 9 7 12 12 C 1.38107 * 120.06717 * 179.97438 * 11 10 9 13 13 C 1.38893 * 119.93219 * 0.02562 * 12 11 10 14 14 N 1.39845 * 120.07478 * 179.97438 * 13 12 11 15 15 C 1.34783 * 120.00125 * 35.09693 * 14 13 12 16 16 O 1.21604 * 119.99593 * 355.36141 * 15 14 13 17 17 C 1.47486 * 120.00220 * 175.36103 * 15 14 13 18 18 C 1.39821 * 120.24206 * 359.97438 * 17 15 14 19 19 C 1.37302 * 120.09073 * 180.02562 * 18 17 15 20 20 C 1.40030 * 120.48390 * 0.02684 * 19 18 17 21 21 C 1.38948 * 119.23254 * 359.97120 * 20 19 18 22 22 C 1.37679 * 120.64346 * 0.02562 * 21 20 19 23 23 C 1.51253 * 108.47161 * 179.97438 * 21 20 19 24 24 C 1.53755 * 104.44270 * 0.02562 * 23 21 20 25 25 N 1.39005 * 129.12130 * 179.97438 * 20 19 18 26 26 C 1.38888 * 119.85108 * 0.27173 * 13 12 11 27 27 C 1.38108 * 119.93016 * 359.41079 * 26 13 12 28 28 H 0.96993 * 120.00345 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47699 * 60.00259 * 9 7 2 30 30 H 1.09006 * 109.47141 * 299.99840 * 9 7 2 31 31 H 1.07995 * 119.96939 * 359.97438 * 11 10 9 32 32 H 1.08008 * 120.03726 * 179.97438 * 12 11 10 33 33 H 0.96997 * 120.00494 * 215.09267 * 14 13 12 34 34 H 1.07996 * 119.95354 * 0.02562 * 18 17 15 35 35 H 1.08003 * 119.76123 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.98395 * 180.02562 * 22 21 20 37 37 H 1.09003 * 110.44311 * 118.73962 * 23 21 20 38 38 H 1.08996 * 110.44615 * 241.26128 * 23 21 20 39 39 H 1.08994 * 110.30026 * 241.06605 * 24 23 21 40 40 H 1.08998 * 110.30107 * 118.92554 * 24 23 21 41 41 H 0.96999 * 124.87167 * 359.75290 * 25 20 19 42 42 H 1.08006 * 120.03675 * 179.70304 * 26 13 12 43 43 H 1.07994 * 119.96762 * 180.30006 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4990 -0.0005 10 6 2.2306 -3.6445 -0.0005 11 6 2.6790 -4.1688 1.1979 12 6 3.5761 -5.2188 1.2013 13 6 4.0283 -5.7478 -0.0007 14 7 4.9371 -6.8107 -0.0008 15 6 4.8651 -7.7591 0.9542 16 8 4.0654 -7.6468 1.8635 17 6 5.7560 -8.9331 0.8965 18 6 6.6769 -9.0675 -0.1469 19 6 7.5045 -10.1620 -0.1979 20 6 7.4351 -11.1517 0.7903 21 6 6.5185 -11.0139 1.8254 22 6 5.6852 -9.9195 1.8838 23 6 6.6501 -12.2083 2.7441 24 6 7.7628 -13.0591 2.1100 25 7 8.1770 -12.3206 0.9145 26 6 3.5807 -5.2148 -1.2026 27 6 2.6786 -4.1691 -1.1991 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6249 -2.5570 0.8897 31 1 2.3273 -3.7568 2.1322 32 1 3.9263 -5.6277 2.1376 33 1 5.6194 -6.8656 -0.6881 34 1 6.7374 -8.3096 -0.9138 35 1 8.2142 -10.2603 -1.0061 36 1 4.9769 -9.8230 2.6934 37 1 6.9396 -11.8885 3.7451 38 1 5.7152 -12.7676 2.7778 39 1 7.3773 -14.0403 1.8334 40 1 8.6002 -13.1618 2.8002 41 1 8.8670 -12.6079 0.2962 42 1 3.9342 -5.6207 -2.1390 43 1 2.3264 -3.7573 -2.1333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:53 Heat of formation + Delta-G solvation = 20.268441 kcal Electronic energy + Delta-G solvation = -24786.565401 eV Core-core repulsion = 21181.951544 eV Total energy + Delta-G solvation = -3604.613857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93539 -39.98067 -38.11992 -36.34240 -34.84502 -32.99076 -32.43328 -30.83953 -30.23245 -29.57627 -29.14351 -26.61854 -24.26056 -22.98401 -22.66263 -22.25461 -22.08022 -20.56026 -19.79882 -18.16168 -17.68735 -16.83274 -16.26724 -16.07260 -15.92105 -15.24170 -15.10838 -14.78964 -14.23811 -14.14896 -14.03291 -13.80956 -13.18702 -13.03468 -12.89373 -12.81943 -12.68203 -12.60350 -12.51508 -12.35417 -11.94289 -11.34258 -11.25588 -11.18923 -10.79685 -10.55815 -10.51330 -10.33105 -9.95574 -9.76228 -9.35356 -9.19499 -9.17615 -8.38634 -8.21470 -7.81570 -7.30007 -5.99624 -4.03430 0.76751 1.09718 2.02085 2.14446 2.85523 2.87721 3.20596 3.32213 3.39705 3.44965 3.69964 4.15569 4.21394 4.42319 4.57810 4.60465 4.64817 4.71838 4.83581 4.99856 5.06952 5.14566 5.34360 5.43927 5.45680 5.49719 5.65292 5.69556 5.86511 5.99037 6.02548 6.11188 6.14505 6.21743 6.24483 6.27057 6.70539 6.72577 6.88413 6.99709 7.22935 7.27266 7.27688 7.56944 7.61384 7.78237 7.92713 7.96486 8.29288 8.37528 9.02288 9.60120 11.09950 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.037103 B = 0.001981 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.472360 B =14133.379397 C =14347.406106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.043 4.043 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.104 3.896 14 N -0.666 5.666 15 C 0.561 3.439 16 O -0.526 6.526 17 C -0.188 4.188 18 C -0.037 4.037 19 C -0.190 4.190 20 C 0.221 3.779 21 C -0.186 4.186 22 C 0.004 3.996 23 C -0.084 4.084 24 C 0.116 3.884 25 N -0.739 5.739 26 C -0.143 4.143 27 C -0.109 4.109 28 H 0.261 0.739 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.403 0.597 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.413 0.587 42 H 0.113 0.887 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.958 -27.290 0.493 32.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.043 4.043 11 C -0.128 4.128 12 C -0.136 4.136 13 C 0.012 3.988 14 N -0.310 5.310 15 C 0.350 3.650 16 O -0.403 6.403 17 C -0.193 4.193 18 C -0.056 4.056 19 C -0.213 4.213 20 C 0.115 3.885 21 C -0.191 4.191 22 C -0.015 4.015 23 C -0.121 4.121 24 C -0.009 4.009 25 N -0.370 5.370 26 C -0.163 4.163 27 C -0.128 4.128 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.239 0.761 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.251 0.749 42 H 0.131 0.869 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.285 -27.294 1.249 32.331 hybrid contribution 1.180 0.775 -0.768 1.607 sum 18.465 -26.519 0.480 32.318 Atomic orbital electron populations 1.69969 1.06014 1.26638 1.50734 1.25022 0.94880 0.99241 0.95299 0.86490 0.80149 0.83561 0.77569 1.19679 1.21004 1.20979 1.21116 0.93100 0.89879 1.50633 0.92393 1.18360 0.92596 0.89619 0.98394 1.20716 0.96447 0.95268 0.91903 1.21016 0.97640 0.95685 0.98487 1.21147 0.99202 0.96213 0.97041 1.17517 0.96059 0.90849 0.94409 1.43234 1.33374 1.23633 1.30780 1.18155 0.82971 0.81989 0.81842 1.90781 1.38051 1.77708 1.33746 1.19475 1.02327 0.97808 0.99665 1.20906 0.92561 0.96208 0.95969 1.20207 1.04922 0.95435 1.00696 1.18562 0.89783 0.86740 0.93444 1.19770 1.01332 0.98789 0.99176 1.20384 0.94964 0.89759 0.96423 1.21035 0.99000 0.93459 0.98591 1.21851 0.97193 0.95339 0.86489 1.44713 1.41660 1.21622 1.28994 1.20750 1.00310 0.99782 0.95507 1.20869 0.97460 0.95961 0.98509 0.92944 0.95317 0.95289 0.86111 0.85320 0.76116 0.85448 0.85814 0.84677 0.89537 0.89537 0.91253 0.91234 0.74915 0.86856 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.46 9.09 -34.44 -0.31 -14.77 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.05 1.24 5.10 -29.03 -0.15 1.09 16 10 C -0.04 -0.96 5.07 -104.58 -0.53 -1.50 16 11 C -0.11 -2.32 9.69 -39.61 -0.38 -2.70 16 12 C -0.12 -2.25 8.69 -39.39 -0.34 -2.59 16 13 C 0.10 1.80 6.30 -83.72 -0.53 1.27 16 14 N -0.67 -9.12 5.28 -10.82 -0.06 -9.18 16 15 C 0.56 8.23 7.61 -12.49 -0.10 8.14 16 16 O -0.53 -9.60 13.78 5.27 0.07 -9.53 16 17 C -0.19 -2.17 5.88 -104.97 -0.62 -2.79 16 18 C -0.04 -0.33 9.51 -39.33 -0.37 -0.70 16 19 C -0.19 -1.50 10.05 -39.25 -0.39 -1.90 16 20 C 0.22 1.82 7.03 -83.67 -0.59 1.23 16 21 C -0.19 -1.68 6.22 -104.29 -0.65 -2.33 16 22 C 0.00 0.05 9.58 -39.22 -0.38 -0.33 16 23 C -0.08 -0.50 6.95 -27.22 -0.19 -0.69 16 24 C 0.12 0.52 7.96 -3.65 -0.03 0.49 16 25 N -0.74 -4.20 6.49 -58.10 -0.38 -4.58 16 26 C -0.14 -2.42 9.97 -39.39 -0.39 -2.82 16 27 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 32 H 0.13 2.49 6.22 -52.48 -0.33 2.16 16 33 H 0.40 4.02 6.87 -40.82 -0.28 3.74 16 34 H 0.13 0.82 6.41 -52.49 -0.34 0.49 16 35 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.14 1.52 7.65 -52.49 -0.40 1.11 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.41 1.46 8.96 -40.82 -0.37 1.09 16 42 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 43 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -34.32 362.68 -11.08 -45.40 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.47 Total: 3.57 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -6.43 Total: -21.92 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.30 Total: -39.77 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.32 -11.08 -45.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.673 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds