Wall clock time and date at job start Tue Mar 31 2020 13:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99615 * 2 1 4 4 H 1.48495 * 109.47162 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47170 * 300.00366 * 3 2 1 6 6 H 1.48504 * 109.47144 * 60.00201 * 3 2 1 7 7 C 1.37875 * 120.00670 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99419 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.46966 * 180.02562 * 9 7 2 11 11 C 1.38281 * 119.92723 * 89.99844 * 10 9 7 12 12 C 1.38107 * 120.06717 * 179.97438 * 11 10 9 13 13 C 1.38893 * 119.93219 * 0.02562 * 12 11 10 14 14 N 1.39845 * 120.07478 * 179.97438 * 13 12 11 15 15 C 1.34783 * 120.00125 * 35.09693 * 14 13 12 16 16 O 1.21604 * 119.99593 * 355.36141 * 15 14 13 17 17 C 1.47486 * 120.00220 * 175.36103 * 15 14 13 18 18 C 1.39821 * 120.24206 * 359.97438 * 17 15 14 19 19 C 1.37302 * 120.09073 * 180.02562 * 18 17 15 20 20 C 1.40030 * 120.48390 * 0.02684 * 19 18 17 21 21 C 1.38948 * 119.23254 * 359.97120 * 20 19 18 22 22 C 1.37679 * 120.64346 * 0.02562 * 21 20 19 23 23 C 1.51253 * 108.47161 * 179.97438 * 21 20 19 24 24 C 1.53755 * 104.44270 * 0.02562 * 23 21 20 25 25 N 1.39005 * 129.12130 * 179.97438 * 20 19 18 26 26 C 1.38888 * 119.85108 * 0.27173 * 13 12 11 27 27 C 1.38108 * 119.93016 * 359.41079 * 26 13 12 28 28 H 0.96993 * 120.00345 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47699 * 60.00259 * 9 7 2 30 30 H 1.09006 * 109.47141 * 299.99840 * 9 7 2 31 31 H 1.07995 * 119.96939 * 359.97438 * 11 10 9 32 32 H 1.08008 * 120.03726 * 179.97438 * 12 11 10 33 33 H 0.96997 * 120.00494 * 215.09267 * 14 13 12 34 34 H 1.07996 * 119.95354 * 0.02562 * 18 17 15 35 35 H 1.08003 * 119.76123 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.98395 * 180.02562 * 22 21 20 37 37 H 1.09003 * 110.44311 * 118.73962 * 23 21 20 38 38 H 1.08996 * 110.44615 * 241.26128 * 23 21 20 39 39 H 1.08994 * 110.30026 * 241.06605 * 24 23 21 40 40 H 1.08998 * 110.30107 * 118.92554 * 24 23 21 41 41 H 0.96999 * 124.87167 * 359.75290 * 25 20 19 42 42 H 1.08006 * 120.03675 * 179.70304 * 26 13 12 43 43 H 1.07994 * 119.96762 * 180.30006 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4990 -0.0005 10 6 2.2306 -3.6445 -0.0005 11 6 2.6790 -4.1688 1.1979 12 6 3.5761 -5.2188 1.2013 13 6 4.0283 -5.7478 -0.0007 14 7 4.9371 -6.8107 -0.0008 15 6 4.8651 -7.7591 0.9542 16 8 4.0654 -7.6468 1.8635 17 6 5.7560 -8.9331 0.8965 18 6 6.6769 -9.0675 -0.1469 19 6 7.5045 -10.1620 -0.1979 20 6 7.4351 -11.1517 0.7903 21 6 6.5185 -11.0139 1.8254 22 6 5.6852 -9.9195 1.8838 23 6 6.6501 -12.2083 2.7441 24 6 7.7628 -13.0591 2.1100 25 7 8.1770 -12.3206 0.9145 26 6 3.5807 -5.2148 -1.2026 27 6 2.6786 -4.1691 -1.1991 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6249 -2.5570 0.8897 31 1 2.3273 -3.7568 2.1322 32 1 3.9263 -5.6277 2.1376 33 1 5.6194 -6.8656 -0.6881 34 1 6.7374 -8.3096 -0.9138 35 1 8.2142 -10.2603 -1.0061 36 1 4.9769 -9.8230 2.6934 37 1 6.9396 -11.8885 3.7451 38 1 5.7152 -12.7676 2.7778 39 1 7.3773 -14.0403 1.8334 40 1 8.6002 -13.1618 2.8002 41 1 8.8670 -12.6079 0.2962 42 1 3.9342 -5.6207 -2.1390 43 1 2.3264 -3.7573 -2.1333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:52 Heat of formation + Delta-G solvation = -0.606878 kcal Electronic energy + Delta-G solvation = -24787.470623 eV Core-core repulsion = 21181.951544 eV Total energy + Delta-G solvation = -3605.519079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.80248 -40.97225 -39.51682 -37.04391 -36.29605 -34.97080 -33.03233 -32.40032 -31.76458 -30.58635 -29.70139 -28.34971 -25.62071 -24.29829 -23.80504 -23.36866 -22.65980 -22.01304 -21.00096 -19.09013 -18.56788 -18.48283 -17.84596 -16.87934 -16.57917 -16.52416 -16.30735 -16.14028 -15.91507 -15.34180 -14.81033 -14.71152 -14.57916 -14.50220 -14.26683 -13.76349 -13.61334 -13.55815 -13.45908 -13.25751 -13.12767 -13.01632 -12.83030 -12.63022 -12.44564 -12.03341 -11.84146 -11.63727 -11.52174 -11.12366 -11.08011 -10.77675 -10.59640 -9.83966 -9.75259 -8.90596 -8.33892 -8.16821 -6.31925 -0.05502 0.44079 0.55094 0.59158 1.40271 1.40867 1.54672 1.86828 2.07774 2.41030 2.42819 2.87669 3.03625 3.11812 3.60410 3.72706 3.79890 4.06798 4.08248 4.17254 4.26008 4.27032 4.38885 4.39986 4.50761 4.62522 4.67919 4.73898 4.77193 4.91437 5.07352 5.10037 5.13908 5.22689 5.32948 5.33921 5.36404 5.42910 5.48728 5.51004 5.58586 5.62506 5.76890 6.08969 6.11175 6.13812 6.26703 6.50576 6.80910 6.88410 7.18330 7.36430 8.90958 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.037103 B = 0.001981 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.472360 B =14133.379397 C =14347.406106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.075 4.075 11 C -0.122 4.122 12 C -0.125 4.125 13 C 0.118 3.882 14 N -0.653 5.653 15 C 0.559 3.441 16 O -0.572 6.572 17 C -0.213 4.213 18 C -0.030 4.030 19 C -0.191 4.191 20 C 0.223 3.777 21 C -0.201 4.201 22 C -0.012 4.012 23 C -0.088 4.088 24 C 0.114 3.886 25 N -0.728 5.728 26 C -0.126 4.126 27 C -0.113 4.113 28 H 0.265 0.735 29 H 0.008 0.992 30 H -0.001 1.001 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.424 0.576 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.426 0.574 42 H 0.161 0.839 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.573 -29.313 -1.304 36.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.075 4.075 11 C -0.140 4.140 12 C -0.145 4.145 13 C 0.024 3.976 14 N -0.299 5.299 15 C 0.352 3.648 16 O -0.452 6.452 17 C -0.219 4.219 18 C -0.049 4.049 19 C -0.214 4.214 20 C 0.115 3.885 21 C -0.206 4.206 22 C -0.032 4.032 23 C -0.125 4.125 24 C -0.010 4.010 25 N -0.359 5.359 26 C -0.146 4.146 27 C -0.132 4.132 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.017 0.983 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.264 0.736 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.136 0.864 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.266 0.734 42 H 0.179 0.821 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.961 -29.370 -0.577 36.087 hybrid contribution 0.149 1.162 -0.178 1.185 sum 21.110 -28.208 -0.755 35.241 Atomic orbital electron populations 1.70094 1.07693 1.27860 1.51466 1.25961 0.95798 1.03192 0.94649 0.85359 0.78926 0.78611 0.77919 1.18856 1.19950 1.20385 1.21416 0.93132 0.91146 1.50689 0.92620 1.18103 0.92877 0.91196 0.95853 1.20428 0.97693 0.95666 0.93755 1.20930 0.98664 0.96698 0.97757 1.21143 0.99282 0.95908 0.98161 1.17618 0.95463 0.90757 0.93754 1.43124 1.33145 1.22291 1.31333 1.18716 0.82619 0.82594 0.80912 1.90758 1.40127 1.78746 1.35565 1.19272 1.03725 0.97112 1.01750 1.21146 0.91387 0.97076 0.95323 1.20524 1.04950 0.94714 1.01202 1.18810 0.89349 0.87409 0.92978 1.20019 1.01159 0.99023 1.00404 1.20372 0.95590 0.90887 0.96305 1.21157 1.00076 0.92692 0.98549 1.22018 0.97265 0.95453 0.86247 1.44846 1.41098 1.20595 1.29334 1.21060 0.98380 0.98008 0.97147 1.20987 0.97954 0.96683 0.97540 0.92597 0.97366 0.98300 0.87248 0.85712 0.73562 0.82888 0.82968 0.86441 0.89049 0.89050 0.89486 0.89481 0.73443 0.82128 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.53 -30.90 9.09 25.60 0.23 -30.67 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.06 3.17 5.10 29.10 0.15 3.31 16 10 C -0.07 -3.51 5.07 -19.84 -0.10 -3.62 16 11 C -0.12 -5.43 9.69 22.25 0.22 -5.21 16 12 C -0.12 -4.96 8.69 22.40 0.19 -4.76 16 13 C 0.12 3.92 6.30 38.18 0.24 4.16 16 14 N -0.65 -16.62 5.28 -306.39 -1.62 -18.24 16 15 C 0.56 16.25 7.61 86.68 0.66 16.91 16 16 O -0.57 -21.64 13.78 -4.04 -0.06 -21.70 16 17 C -0.21 -4.76 5.88 -20.09 -0.12 -4.87 16 18 C -0.03 -0.45 9.51 22.43 0.21 -0.23 16 19 C -0.19 -2.35 10.05 22.48 0.23 -2.13 16 20 C 0.22 3.04 7.03 38.61 0.27 3.31 16 21 C -0.20 -3.37 6.22 -19.65 -0.12 -3.49 16 22 C -0.01 -0.26 9.58 22.50 0.22 -0.04 16 23 C -0.09 -0.90 6.95 30.28 0.21 -0.69 16 24 C 0.11 0.65 7.96 86.63 0.69 1.34 16 25 N -0.73 -5.67 6.49 -337.74 -2.19 -7.87 16 26 C -0.13 -3.96 9.97 22.39 0.22 -3.74 16 27 C -0.11 -4.45 9.69 22.25 0.22 -4.23 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.01 0.47 8.08 -2.39 -0.02 0.45 16 30 H 0.00 -0.08 8.08 -2.38 -0.02 -0.10 16 31 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 32 H 0.13 5.04 6.22 -2.91 -0.02 5.02 16 33 H 0.42 6.99 6.87 -92.71 -0.64 6.35 16 34 H 0.15 1.34 6.41 -2.91 -0.02 1.32 16 35 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 36 H 0.12 2.88 7.65 -2.91 -0.02 2.86 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.43 1.29 8.96 -92.71 -0.83 0.46 16 42 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 43 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -78.36 362.68 2.11 -76.24 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -0.41 Total: 15.48 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 4.08 Total: -34.09 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -3.53 Total: -83.18 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -78.36 2.11 -76.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.636 kcal (2) G-P(sol) polarization free energy of solvation -78.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds