Wall clock time and date at job start Tue Mar 31 2020 13:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47220 * 239.99904 * 3 2 1 5 5 H 1.48502 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47112 * 119.99635 * 3 2 1 7 7 C 1.38658 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00218 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00106 * 185.05736 * 9 7 2 11 11 C 1.38875 * 120.07093 * 354.46003 * 10 9 7 12 12 C 1.38098 * 119.93255 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06673 * 0.27337 * 12 11 10 14 14 C 1.50708 * 119.92891 * 179.70367 * 13 12 11 15 15 C 1.50694 * 109.47142 * 90.00372 * 14 13 12 16 16 O 1.21287 * 120.00044 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00025 * 180.02562 * 15 14 13 18 18 C 1.46925 * 120.63226 * 359.97438 * 17 15 14 19 19 C 1.53190 * 108.77833 * 126.36825 * 18 17 15 20 20 C 1.53045 * 109.31045 * 54.63754 * 19 18 17 21 21 H 1.09005 * 109.45588 * 58.65215 * 20 19 18 22 22 F 1.39893 * 109.46006 * 178.61101 * 20 19 18 23 23 C 1.53038 * 109.53668 * 298.63503 * 20 19 18 24 24 H 1.08997 * 109.49708 * 301.37845 * 23 20 19 25 25 N 1.46905 * 109.49815 * 181.31693 * 23 20 19 26 26 C 1.46925 * 120.62959 * 179.72110 * 17 15 14 27 27 C 1.38298 * 120.13821 * 359.45140 * 13 12 11 28 28 C 1.38099 * 120.06818 * 0.54966 * 27 13 12 29 29 H 0.96992 * 119.99905 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.03142 * 0.05102 * 11 10 9 31 31 H 1.07998 * 119.96373 * 180.02562 * 12 11 10 32 32 H 1.09003 * 109.46652 * 210.00662 * 14 13 12 33 33 H 1.09004 * 109.46678 * 330.00252 * 14 13 12 34 34 H 1.08999 * 109.58670 * 246.15940 * 18 17 15 35 35 H 1.09006 * 109.58622 * 6.43630 * 18 17 15 36 36 H 1.08996 * 109.49555 * 174.58620 * 19 18 17 37 37 H 1.08992 * 109.49811 * 294.68835 * 19 18 17 38 38 H 1.00892 * 111.00023 * 180.02562 * 25 23 20 39 39 H 1.00901 * 110.99891 * 303.95561 * 25 23 20 40 40 H 1.08999 * 109.58942 * 353.41089 * 26 17 15 41 41 H 1.09000 * 109.58953 * 113.84111 * 26 17 15 42 42 H 1.08004 * 119.96388 * 180.24930 * 27 13 12 43 43 H 1.08005 * 120.03196 * 179.74344 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5686 -5.8208 0.3194 14 6 4.3848 -7.0828 0.4311 15 6 4.6640 -7.3736 1.8831 16 8 4.2421 -6.6292 2.7427 17 7 5.3833 -8.4604 2.2265 18 6 5.9016 -9.3711 1.1966 19 6 7.4108 -9.5373 1.3996 20 6 7.6813 -9.9931 2.8354 21 1 7.1623 -10.9334 3.0217 22 9 9.0565 -10.1764 3.0150 23 6 7.1765 -8.9297 3.8135 24 1 7.6775 -7.9829 3.6118 25 7 7.4649 -9.3535 5.1902 26 6 5.6689 -8.7538 3.6375 27 6 2.1874 -5.8884 0.3379 28 6 1.4366 -4.7344 0.2295 29 1 -0.4849 0.8400 -0.0004 30 1 3.9527 -2.4844 0.0010 31 1 5.2812 -4.5469 0.1946 32 1 3.8309 -7.9136 -0.0060 33 1 5.3272 -6.9542 -0.1015 34 1 5.4118 -10.3408 1.2864 35 1 5.7073 -8.9539 0.2085 36 1 7.7915 -10.2843 0.7030 37 1 7.9091 -8.5847 1.2204 38 1 7.1404 -8.6675 5.8551 39 1 7.0639 -10.2596 5.3811 40 1 5.3236 -7.9281 4.2596 41 1 5.1598 -9.6721 3.9301 42 1 1.6954 -6.8453 0.4322 43 1 0.3580 -4.7883 0.2399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:06 Heat of formation + Delta-G solvation = -85.876208 kcal Electronic energy + Delta-G solvation = -26574.797520 eV Core-core repulsion = 22534.811660 eV Total energy + Delta-G solvation = -4039.985860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.89041 -40.44520 -38.97514 -37.75316 -36.41351 -34.81704 -32.47007 -32.19076 -31.44634 -30.14516 -28.91045 -26.78628 -25.42661 -24.71273 -23.37214 -21.97038 -21.57125 -20.66662 -19.24902 -17.96725 -17.49426 -16.97078 -16.79077 -16.32774 -16.24795 -15.83875 -15.51482 -14.78578 -14.66605 -14.55667 -14.30909 -14.00867 -13.95115 -13.59297 -13.44769 -13.25303 -12.97323 -12.93507 -12.68851 -12.46719 -12.43968 -12.01004 -11.84563 -11.52592 -11.24546 -11.13383 -10.88371 -10.80640 -10.72980 -10.62261 -10.42637 -9.87772 -9.52616 -9.31589 -8.81320 -8.79160 -8.14184 -7.15541 -6.43005 -4.01689 2.22530 2.26322 2.61399 2.75063 3.14355 3.16239 3.18523 3.75014 3.98019 3.98615 4.07066 4.31759 4.37205 4.41692 4.51792 4.68591 4.80171 4.90348 5.02247 5.08943 5.14317 5.20937 5.24592 5.32129 5.36763 5.42641 5.46364 5.61344 5.66871 5.72679 5.84944 6.11418 6.22786 6.42541 6.55518 6.70756 6.88476 6.91948 7.05630 7.15741 7.25351 7.37590 7.46309 7.84829 8.02126 8.15104 9.02578 9.72866 10.75033 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.002339 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.393260 B =11968.686686 C =12344.772497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.157 3.843 11 C -0.232 4.232 12 C -0.056 4.056 13 C -0.173 4.173 14 C -0.078 4.078 15 C 0.513 3.487 16 O -0.516 6.516 17 N -0.623 5.623 18 C 0.110 3.890 19 C -0.163 4.163 20 C 0.104 3.896 21 H 0.081 0.919 22 F -0.202 7.202 23 C 0.052 3.948 24 H 0.097 0.903 25 N -0.833 5.833 26 C 0.082 3.918 27 C -0.059 4.059 28 C -0.192 4.192 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.350 0.650 39 H 0.341 0.659 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.537 -21.767 2.970 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.103 3.897 11 C -0.252 4.252 12 C -0.074 4.074 13 C -0.174 4.174 14 C -0.118 4.118 15 C 0.302 3.698 16 O -0.389 6.389 17 N -0.360 5.360 18 C -0.013 4.013 19 C -0.202 4.202 20 C 0.067 3.933 21 H 0.099 0.901 22 F -0.183 7.183 23 C -0.061 4.061 24 H 0.115 0.885 25 N -0.363 5.363 26 C -0.044 4.044 27 C -0.077 4.077 28 C -0.211 4.211 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.651 -21.075 3.218 25.315 hybrid contribution -0.386 0.726 0.204 0.847 sum 13.265 -20.349 3.421 24.530 Atomic orbital electron populations 1.70028 1.05955 1.27756 1.46084 1.25286 0.95840 0.98817 0.96556 0.85787 0.78706 0.79785 0.79190 1.19509 1.20275 1.19485 1.21284 0.91779 0.80849 1.52885 0.89129 1.83974 1.34357 1.11455 1.78288 1.19381 0.90295 0.88034 0.91965 1.21101 0.93809 0.98768 1.11494 1.20497 0.98002 0.91768 0.97126 1.18629 0.93206 0.92691 1.12921 1.20446 1.01122 0.98120 0.92066 1.21173 0.76955 0.79247 0.92425 1.90748 1.49719 1.46617 1.51804 1.48203 1.55072 1.26476 1.06242 1.21695 0.92505 0.94443 0.92697 1.22573 0.97448 1.04105 0.96108 1.21495 0.77736 0.98930 0.95170 0.90144 1.92844 1.32469 1.96554 1.96432 1.22374 0.94495 0.99555 0.89715 0.88530 1.58868 1.67150 1.07827 1.02415 1.22368 0.95389 1.02520 0.84087 1.20383 0.92737 0.96696 0.97897 1.20151 0.99490 0.90307 1.11153 0.91985 0.85580 0.87875 0.88907 0.88919 0.90904 0.88294 0.88946 0.89802 0.83580 0.84605 0.88268 0.91717 0.87447 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 8 H 0.09 2.39 5.20 -52.48 -0.27 2.11 16 9 O -0.18 -5.17 9.76 0.06 0.00 -5.17 16 10 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 11 C -0.23 -5.21 9.17 -39.40 -0.36 -5.57 16 12 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 13 C -0.17 -2.97 4.38 -104.57 -0.46 -3.43 16 14 C -0.08 -0.93 4.17 -29.03 -0.12 -1.05 16 15 C 0.51 6.83 7.69 -10.99 -0.08 6.74 16 16 O -0.52 -9.44 15.45 5.55 0.09 -9.35 16 17 N -0.62 -5.81 2.98 -173.01 -0.52 -6.32 16 18 C 0.11 0.63 6.34 -3.71 -0.02 0.60 16 19 C -0.16 -0.92 5.82 -26.61 -0.15 -1.08 16 20 C 0.10 0.73 3.42 -26.69 -0.09 0.63 16 21 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 22 F -0.20 -2.03 16.98 2.25 0.04 -1.99 16 23 C 0.05 0.40 3.15 -67.79 -0.21 0.19 16 24 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 25 N -0.83 -5.82 9.16 -4.73 -0.04 -5.87 16 26 C 0.08 0.69 5.98 -3.91 -0.02 0.67 16 27 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 28 C -0.19 -4.18 9.99 -39.40 -0.39 -4.58 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.13 2.82 5.64 -52.48 -0.30 2.52 16 31 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.09 0.86 7.88 -51.93 -0.41 0.46 16 33 H 0.09 0.89 7.64 -51.93 -0.40 0.49 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 0.46 5.93 -51.93 -0.31 0.15 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.35 2.15 9.04 -39.30 -0.36 1.80 16 39 H 0.34 1.80 8.98 -39.29 -0.35 1.44 16 40 H 0.10 1.07 7.01 -51.93 -0.36 0.71 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 43 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -35.27 358.64 -7.74 -43.01 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.70 Total: 5.35 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.76 Total: -15.97 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.20 Total: -37.08 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.09 Total: -14.52 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.27 -7.74 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.863 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds