Wall clock time and date at job start Tue Mar 31 2020 13:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47220 * 239.99904 * 3 2 1 5 5 H 1.48502 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47112 * 119.99635 * 3 2 1 7 7 C 1.38658 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00218 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00106 * 185.05736 * 9 7 2 11 11 C 1.38875 * 120.07093 * 354.46003 * 10 9 7 12 12 C 1.38098 * 119.93255 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06673 * 0.27337 * 12 11 10 14 14 C 1.50708 * 119.92891 * 179.70367 * 13 12 11 15 15 C 1.50694 * 109.47142 * 90.00372 * 14 13 12 16 16 O 1.21287 * 120.00044 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00025 * 180.02562 * 15 14 13 18 18 C 1.46925 * 120.63226 * 359.97438 * 17 15 14 19 19 C 1.53190 * 108.77833 * 126.36825 * 18 17 15 20 20 C 1.53045 * 109.31045 * 54.63754 * 19 18 17 21 21 H 1.09005 * 109.45588 * 58.65215 * 20 19 18 22 22 F 1.39893 * 109.46006 * 178.61101 * 20 19 18 23 23 C 1.53038 * 109.53668 * 298.63503 * 20 19 18 24 24 H 1.08997 * 109.49708 * 301.37845 * 23 20 19 25 25 N 1.46905 * 109.49815 * 181.31693 * 23 20 19 26 26 C 1.46925 * 120.62959 * 179.72110 * 17 15 14 27 27 C 1.38298 * 120.13821 * 359.45140 * 13 12 11 28 28 C 1.38099 * 120.06818 * 0.54966 * 27 13 12 29 29 H 0.96992 * 119.99905 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.03142 * 0.05102 * 11 10 9 31 31 H 1.07998 * 119.96373 * 180.02562 * 12 11 10 32 32 H 1.09003 * 109.46652 * 210.00662 * 14 13 12 33 33 H 1.09004 * 109.46678 * 330.00252 * 14 13 12 34 34 H 1.08999 * 109.58670 * 246.15940 * 18 17 15 35 35 H 1.09006 * 109.58622 * 6.43630 * 18 17 15 36 36 H 1.08996 * 109.49555 * 174.58620 * 19 18 17 37 37 H 1.08992 * 109.49811 * 294.68835 * 19 18 17 38 38 H 1.00892 * 111.00023 * 180.02562 * 25 23 20 39 39 H 1.00901 * 110.99891 * 303.95561 * 25 23 20 40 40 H 1.08999 * 109.58942 * 353.41089 * 26 17 15 41 41 H 1.09000 * 109.58953 * 113.84111 * 26 17 15 42 42 H 1.08004 * 119.96388 * 180.24930 * 27 13 12 43 43 H 1.08005 * 120.03196 * 179.74344 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5686 -5.8208 0.3194 14 6 4.3848 -7.0828 0.4311 15 6 4.6640 -7.3736 1.8831 16 8 4.2421 -6.6292 2.7427 17 7 5.3833 -8.4604 2.2265 18 6 5.9016 -9.3711 1.1966 19 6 7.4108 -9.5373 1.3996 20 6 7.6813 -9.9931 2.8354 21 1 7.1623 -10.9334 3.0217 22 9 9.0565 -10.1764 3.0150 23 6 7.1765 -8.9297 3.8135 24 1 7.6775 -7.9829 3.6118 25 7 7.4649 -9.3535 5.1902 26 6 5.6689 -8.7538 3.6375 27 6 2.1874 -5.8884 0.3379 28 6 1.4366 -4.7344 0.2295 29 1 -0.4849 0.8400 -0.0004 30 1 3.9527 -2.4844 0.0010 31 1 5.2812 -4.5469 0.1946 32 1 3.8309 -7.9136 -0.0060 33 1 5.3272 -6.9542 -0.1015 34 1 5.4118 -10.3408 1.2864 35 1 5.7073 -8.9539 0.2085 36 1 7.7915 -10.2843 0.7030 37 1 7.9091 -8.5847 1.2204 38 1 7.1404 -8.6675 5.8551 39 1 7.0639 -10.2596 5.3811 40 1 5.3236 -7.9281 4.2596 41 1 5.1598 -9.6721 3.9301 42 1 1.6954 -6.8453 0.4322 43 1 0.3580 -4.7883 0.2399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:05 Heat of formation + Delta-G solvation = -111.716408 kcal Electronic energy + Delta-G solvation = -26575.918035 eV Core-core repulsion = 22534.811660 eV Total energy + Delta-G solvation = -4041.106375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.54072 -41.39678 -40.61405 -38.79612 -37.97458 -35.49294 -34.39750 -32.93143 -32.73519 -31.78358 -29.71909 -28.10652 -27.09469 -25.69908 -23.92364 -23.64338 -22.65338 -21.77163 -20.15137 -19.82205 -18.82962 -18.32062 -17.43723 -17.17669 -16.91062 -16.74295 -16.38456 -16.17776 -16.15341 -15.80311 -15.51678 -15.28001 -15.15511 -14.86626 -14.74195 -14.40242 -14.12229 -13.87609 -13.68252 -13.58541 -13.51142 -13.03297 -12.95944 -12.80043 -12.53927 -12.41812 -12.32056 -12.24216 -12.14727 -11.60605 -11.42860 -11.18926 -10.94540 -10.75651 -10.20998 -9.76834 -9.49940 -8.90339 -8.48060 -6.16323 0.61108 0.66327 1.32996 1.43982 1.49637 1.64834 1.94745 2.17030 2.81979 3.14087 3.24113 3.42742 3.49303 3.53034 3.77382 3.83849 3.86884 3.94527 4.04240 4.05253 4.15074 4.19053 4.42377 4.48335 4.56534 4.59947 4.63564 4.69871 4.77270 4.80619 4.89135 4.92727 5.08597 5.13671 5.20153 5.29819 5.43546 5.56646 5.71293 5.76971 6.01344 6.02091 6.20566 6.35873 6.42984 6.96389 7.21248 7.77711 8.75199 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.002339 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.393260 B =11968.686686 C =12344.772497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.415 4.415 8 H 0.099 0.901 9 O -0.233 6.233 10 C 0.112 3.888 11 C -0.245 4.245 12 C -0.061 4.061 13 C -0.146 4.146 14 C -0.077 4.077 15 C 0.511 3.489 16 O -0.580 6.580 17 N -0.613 5.613 18 C 0.104 3.896 19 C -0.158 4.158 20 C 0.098 3.902 21 H 0.105 0.895 22 F -0.221 7.221 23 C 0.060 3.940 24 H 0.071 0.929 25 N -0.840 5.840 26 C 0.085 3.915 27 C -0.056 4.056 28 C -0.207 4.207 29 H 0.273 0.727 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.353 0.647 39 H 0.353 0.647 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.148 0.852 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.134 -25.269 2.249 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.264 4.264 12 C -0.079 4.079 13 C -0.147 4.147 14 C -0.116 4.116 15 C 0.301 3.699 16 O -0.459 6.459 17 N -0.348 5.348 18 C -0.018 4.018 19 C -0.197 4.197 20 C 0.062 3.938 21 H 0.122 0.878 22 F -0.202 7.202 23 C -0.054 4.054 24 H 0.089 0.911 25 N -0.371 5.371 26 C -0.041 4.041 27 C -0.074 4.074 28 C -0.226 4.226 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.166 0.834 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.312 -24.691 2.482 29.697 hybrid contribution -1.017 1.368 0.498 1.776 sum 15.295 -23.323 2.980 28.050 Atomic orbital electron populations 1.70177 1.08009 1.28870 1.48894 1.26605 0.96887 1.02737 0.95843 0.84655 0.77421 0.74258 0.79906 1.17894 1.19407 1.18480 1.21778 0.92463 0.81549 1.53357 0.88325 1.83934 1.35933 1.12575 1.81560 1.19946 0.91647 0.88007 0.94247 1.21222 0.93157 1.00002 1.12018 1.20922 0.99603 0.91219 0.96119 1.19268 0.93368 0.94501 1.07580 1.20596 1.02501 0.96443 0.92036 1.21292 0.76863 0.79498 0.92221 1.90752 1.52742 1.49024 1.53369 1.48226 1.53435 1.25665 1.07431 1.22072 0.92381 0.94982 0.92318 1.22552 0.97429 1.04184 0.95501 1.21735 0.76725 0.99607 0.95771 0.87762 1.92808 1.34151 1.96644 1.96587 1.22221 0.93659 0.98988 0.90508 0.91103 1.58871 1.67398 1.08617 1.02226 1.22375 0.95934 1.02331 0.83428 1.20874 0.93484 0.96937 0.96122 1.20449 0.99915 0.90720 1.11508 0.91807 0.86596 0.84592 0.84721 0.85344 0.88088 0.86274 0.86592 0.91051 0.83316 0.83319 0.91150 0.89398 0.83447 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.04 13.67 21.61 0.30 -57.74 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 44.16 29.55 68.60 2.03 46.19 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.42 -25.14 9.49 67.92 0.64 -24.50 16 8 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 9 O -0.23 -14.63 9.76 -22.71 -0.22 -14.85 16 10 C 0.11 5.85 6.65 22.58 0.15 6.00 16 11 C -0.24 -11.27 9.17 22.39 0.21 -11.06 16 12 C -0.06 -2.18 9.69 22.25 0.22 -1.97 16 13 C -0.15 -4.54 4.38 -19.83 -0.09 -4.63 16 14 C -0.08 -1.41 4.17 29.10 0.12 -1.29 16 15 C 0.51 11.81 7.69 87.66 0.67 12.49 16 16 O -0.58 -20.50 15.45 -3.05 -0.05 -20.55 16 17 N -0.61 -9.02 2.98 -819.66 -2.44 -11.47 16 18 C 0.10 0.59 6.34 86.36 0.55 1.13 16 19 C -0.16 -1.07 5.82 30.67 0.18 -0.89 16 20 C 0.10 1.04 3.42 30.62 0.10 1.15 16 21 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 22 F -0.22 -3.91 16.98 44.97 0.76 -3.15 16 23 C 0.06 0.82 3.15 44.86 0.14 0.96 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 N -0.84 -10.46 9.16 -168.89 -1.55 -12.01 16 26 C 0.08 1.24 5.98 86.23 0.52 1.75 16 27 C -0.06 -1.94 9.69 22.25 0.22 -1.73 16 28 C -0.21 -9.25 9.99 22.39 0.22 -9.03 16 29 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.12 5.43 5.64 -2.91 -0.02 5.42 16 31 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.13 1.50 7.88 -2.39 -0.02 1.48 16 33 H 0.13 1.58 7.64 -2.39 -0.02 1.56 16 34 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.12 0.26 5.93 -2.38 -0.01 0.24 16 36 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.35 4.07 9.04 -89.70 -0.81 3.26 16 39 H 0.35 2.91 8.98 -89.69 -0.81 2.11 16 40 H 0.07 1.49 7.01 -2.39 -0.02 1.47 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -86.09 358.64 2.59 -83.49 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -0.55 Total: 22.60 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 4.32 Total: -32.52 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -3.69 Total: -81.21 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.27 Total: -35.40 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.76 Total: -3.15 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -86.09 2.59 -83.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.225 kcal (2) G-P(sol) polarization free energy of solvation -86.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds