Wall clock time and date at job start Tue Mar 31 2020 13:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86804 * 119.99645 * 2 1 4 4 H 1.48499 * 109.46955 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47193 * 300.00033 * 3 2 1 6 6 H 1.48501 * 109.47160 * 60.00423 * 3 2 1 7 7 C 1.40224 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00315 * 196.75805 * 7 2 1 9 9 C 1.41083 * 119.99851 * 16.75357 * 7 2 1 10 10 C 1.40898 * 120.10124 * 205.52106 * 9 7 2 11 11 C 1.36305 * 119.89155 * 180.02562 * 10 9 7 12 12 C 1.40037 * 120.10403 * 0.02562 * 11 10 9 13 13 C 1.47591 * 119.89453 * 179.97438 * 12 11 10 14 14 O 1.21613 * 119.99861 * 333.39639 * 13 12 11 15 15 N 1.34779 * 120.00084 * 153.11902 * 13 12 11 16 16 C 1.46931 * 120.55569 * 353.79296 * 15 13 12 17 17 C 1.53433 * 107.76342 * 224.65787 * 16 15 13 18 18 C 1.52838 * 108.86084 * 296.69481 * 17 16 15 19 19 C 1.50611 * 110.51573 * 51.40127 * 18 17 16 20 20 C 1.38455 * 118.86740 * 159.49803 * 19 18 17 21 21 C 1.39096 * 120.16686 * 178.98818 * 20 19 18 22 22 N 1.39879 * 119.96969 * 180.28232 * 21 20 19 23 23 C 1.38927 * 120.02807 * 0.82809 * 21 20 19 24 24 C 1.37956 * 119.82930 * 359.53454 * 23 21 20 25 25 C 1.38728 * 121.53186 * 339.17632 * 19 18 17 26 26 C 1.40039 * 120.20602 * 0.25430 * 12 11 10 27 27 C 1.36291 * 120.10564 * 359.43843 * 26 12 11 28 28 H 0.97001 * 120.00462 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.05755 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.94401 * 180.02562 * 11 10 9 31 31 H 1.08994 * 109.80147 * 344.22787 * 16 15 13 32 32 H 1.08994 * 109.79859 * 105.03878 * 16 15 13 33 33 H 1.08999 * 109.57168 * 56.51210 * 17 16 15 34 34 H 1.09002 * 109.57389 * 176.75589 * 17 16 15 35 35 H 1.09000 * 109.26734 * 171.66835 * 18 17 16 36 36 H 1.08998 * 109.26851 * 291.13653 * 18 17 16 37 37 H 1.08000 * 119.87225 * 359.81940 * 20 19 18 38 38 H 0.96994 * 119.99640 * 180.53833 * 22 21 20 39 39 H 0.97004 * 120.00065 * 0.53874 * 22 21 20 40 40 H 1.08003 * 120.08428 * 179.52592 * 23 21 20 41 41 H 1.07994 * 119.93200 * 179.97438 * 24 23 21 42 42 H 1.08003 * 119.94412 * 179.70169 * 26 12 11 43 43 H 1.08001 * 120.05738 * 180.26964 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3465 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8817 2.3965 1.2126 7 6 2.0077 -1.2143 -0.0005 8 1 3.0533 -1.2343 0.2691 9 6 1.3472 -2.4101 -0.3533 10 6 1.8178 -3.6466 0.1312 11 6 1.1767 -4.7993 -0.2127 12 6 0.0525 -4.7559 -1.0466 13 6 -0.6377 -6.0069 -1.4165 14 8 -0.0244 -7.0569 -1.4359 15 7 -1.9490 -5.9866 -1.7274 16 6 -2.7345 -4.7546 -1.5718 17 6 -4.0636 -5.1284 -0.9024 18 6 -4.8384 -6.0634 -1.8304 19 6 -3.9697 -7.2142 -2.2656 20 6 -4.5742 -8.3673 -2.7365 21 6 -3.7975 -9.4386 -3.1653 22 7 -4.4126 -10.5994 -3.6459 23 6 -2.4117 -9.3604 -3.1058 24 6 -1.8089 -8.2146 -2.6297 25 6 -2.5855 -7.1396 -2.2105 26 6 -0.4153 -3.5298 -1.5352 27 6 0.2154 -2.3714 -1.1917 28 1 -0.4851 0.8400 0.0004 29 1 2.6849 -3.6812 0.7740 30 1 1.5364 -5.7476 0.1585 31 1 -2.1915 -4.0472 -0.9452 32 1 -2.9243 -4.3118 -2.5495 33 1 -3.8668 -5.6331 0.0434 34 1 -4.6471 -4.2259 -0.7201 35 1 -5.7110 -6.4505 -1.3042 36 1 -5.1661 -5.5078 -2.7090 37 1 -5.6514 -8.4293 -2.7834 38 1 -3.8715 -11.3497 -3.9376 39 1 -5.3802 -10.6541 -3.6873 40 1 -1.8080 -10.1947 -3.4313 41 1 -0.7318 -8.1521 -2.5823 42 1 -1.2798 -3.5016 -2.1819 43 1 -0.1486 -1.4259 -1.5655 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580054931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:28 Heat of formation + Delta-G solvation = 26.581903 kcal Electronic energy + Delta-G solvation = -26354.443057 eV Core-core repulsion = 22750.102972 eV Total energy + Delta-G solvation = -3604.340085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67242 -38.59558 -37.18594 -36.56190 -34.10474 -33.47403 -33.16783 -30.42808 -30.01532 -29.52606 -28.02346 -26.17755 -25.14457 -23.01549 -22.75722 -21.80296 -20.89848 -19.92282 -18.94805 -17.56792 -17.08426 -16.71544 -16.45379 -15.86896 -15.55884 -15.08177 -14.67036 -14.20781 -14.04305 -13.85980 -13.67751 -13.32244 -13.05643 -12.96819 -12.78718 -12.63505 -12.48158 -12.13673 -11.98991 -11.66969 -11.40352 -11.34388 -11.29658 -11.03021 -10.84238 -10.70684 -10.51893 -10.35427 -10.01523 -9.55295 -9.32868 -8.95481 -8.66987 -8.45160 -7.71414 -7.60686 -7.06121 -6.80159 -4.63794 1.60855 1.78213 2.28108 2.88884 2.93659 2.97254 2.99166 3.40635 3.66978 3.73137 3.95116 4.15297 4.47285 4.80471 4.97396 5.11425 5.18352 5.38994 5.43132 5.47099 5.53687 5.70103 5.75442 5.81777 5.93354 6.03788 6.06020 6.14230 6.24727 6.28896 6.34979 6.43770 6.54757 6.72311 6.75089 6.80260 6.90086 7.00272 7.09117 7.36415 7.40946 7.57331 7.67782 7.76759 7.81323 7.82171 8.00039 8.05344 8.36282 8.59781 8.70937 8.90227 9.85571 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.026649 B = 0.002955 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.462190 B = 9473.612267 C =10283.110977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.441 4.441 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.237 4.237 11 C -0.022 4.022 12 C -0.283 4.283 13 C 0.573 3.427 14 O -0.552 6.552 15 N -0.554 5.554 16 C 0.092 3.908 17 C -0.137 4.137 18 C -0.075 4.075 19 C -0.079 4.079 20 C -0.179 4.179 21 C 0.182 3.818 22 N -0.886 5.886 23 C -0.178 4.178 24 C -0.106 4.106 25 C 0.118 3.882 26 C -0.077 4.077 27 C -0.176 4.176 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.394 0.606 39 H 0.392 0.608 40 H 0.117 0.883 41 H 0.169 0.831 42 H 0.105 0.895 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.436 -7.980 -4.622 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.256 4.256 11 C -0.041 4.041 12 C -0.287 4.287 13 C 0.371 3.629 14 O -0.434 6.434 15 N -0.277 5.277 16 C -0.030 4.030 17 C -0.175 4.175 18 C -0.112 4.112 19 C -0.082 4.082 20 C -0.203 4.203 21 C 0.079 3.921 22 N -0.427 5.427 23 C -0.201 4.201 24 C -0.126 4.126 25 C 0.022 3.978 26 C -0.095 4.095 27 C -0.195 4.195 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.221 0.779 39 H 0.220 0.780 40 H 0.135 0.865 41 H 0.185 0.815 42 H 0.123 0.877 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.244 -8.220 -4.552 13.901 hybrid contribution -0.081 0.419 -0.126 0.445 sum -10.325 -7.802 -4.678 13.761 Atomic orbital electron populations 1.69730 1.07870 1.29968 1.31975 1.26088 0.94843 1.01868 0.91905 0.86170 0.81116 0.80204 0.78869 1.18081 1.19377 1.19660 1.19880 0.98063 0.91047 1.37861 0.89686 1.17806 0.90484 0.92162 0.87039 1.20713 1.04423 0.92710 1.07784 1.20298 0.92538 0.97053 0.94192 1.18757 1.03983 0.90857 1.15144 1.18798 0.79642 0.89587 0.74843 1.90438 1.65976 1.32888 1.54057 1.45568 1.09515 1.09750 1.62852 1.22596 0.92018 0.86931 1.01478 1.21920 0.96418 0.99975 0.99214 1.20388 0.97204 0.94292 0.99367 1.19230 0.91578 0.95800 1.01590 1.20229 0.98423 0.93253 1.08347 1.17783 0.91950 0.87264 0.95106 1.42361 1.08774 1.16146 1.75445 1.20532 0.92105 0.99647 1.07811 1.22057 1.03189 0.91355 0.96033 1.17629 0.90751 0.88497 1.00894 1.20939 0.97903 0.92285 0.98400 1.20998 0.99737 0.96852 1.01935 0.90267 0.88322 0.88323 0.86147 0.91302 0.91096 0.89980 0.90788 0.90767 0.86578 0.77890 0.78049 0.86490 0.81468 0.87708 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.87 10.95 55.56 0.61 -17.26 16 2 C 0.07 1.68 5.15 -17.31 -0.09 1.59 16 3 Si 0.91 16.93 29.59 -169.99 -5.03 11.90 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 6 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.44 -10.72 9.04 -37.76 -0.34 -11.06 16 8 H 0.09 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.13 3.18 5.57 -106.80 -0.59 2.59 16 10 C -0.24 -5.60 9.73 -39.27 -0.38 -5.98 16 11 C -0.02 -0.50 9.52 -39.60 -0.38 -0.87 16 12 C -0.28 -6.36 5.49 -104.73 -0.57 -6.94 16 13 C 0.57 12.41 7.34 -12.44 -0.09 12.32 16 14 O -0.55 -12.85 13.30 5.27 0.07 -12.78 16 15 N -0.55 -10.32 2.97 -113.88 -0.34 -10.66 16 16 C 0.09 1.44 4.51 -3.58 -0.02 1.43 16 17 C -0.14 -1.78 6.11 -26.59 -0.16 -1.95 16 18 C -0.08 -0.91 5.77 -28.01 -0.16 -1.07 16 19 C -0.08 -1.16 5.76 -104.40 -0.60 -1.77 16 20 C -0.18 -2.36 9.53 -39.18 -0.37 -2.74 16 21 C 0.18 2.38 6.76 -83.61 -0.57 1.82 16 22 N -0.89 -8.16 9.10 32.49 0.30 -7.87 16 23 C -0.18 -2.64 9.90 -39.43 -0.39 -3.03 16 24 C -0.11 -1.89 8.86 -39.37 -0.35 -2.24 16 25 C 0.12 2.09 6.32 -83.49 -0.53 1.56 16 26 C -0.08 -1.66 7.38 -39.61 -0.29 -1.95 16 27 C -0.18 -4.18 8.63 -39.27 -0.34 -4.51 16 28 H 0.29 5.93 8.29 -40.82 -0.34 5.60 16 29 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 30 H 0.10 2.18 7.86 -52.49 -0.41 1.77 16 31 H 0.12 2.09 4.73 -51.93 -0.25 1.85 16 32 H 0.07 0.99 7.61 -51.93 -0.39 0.60 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.39 2.97 8.84 -40.82 -0.36 2.61 16 39 H 0.39 2.81 8.84 -40.82 -0.36 2.45 16 40 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 41 H 0.17 3.35 4.98 -53.59 -0.27 3.08 16 42 H 0.11 1.99 4.97 -52.48 -0.26 1.73 16 43 H 0.12 2.91 6.18 -52.49 -0.32 2.58 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -27.93 345.50 -10.55 -38.48 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -5.13 Total: 15.78 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -6.23 Total: -22.80 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.57 Total: -35.79 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.07 Total: -12.78 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.93 -10.55 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580054931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.060 kcal (2) G-P(sol) polarization free energy of solvation -27.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds