Wall clock time and date at job start Tue Mar 31 2020 13:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86804 * 119.99645 * 2 1 4 4 H 1.48499 * 109.46955 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47193 * 300.00033 * 3 2 1 6 6 H 1.48501 * 109.47160 * 60.00423 * 3 2 1 7 7 C 1.40224 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00315 * 196.75805 * 7 2 1 9 9 C 1.41083 * 119.99851 * 16.75357 * 7 2 1 10 10 C 1.40898 * 120.10124 * 205.52106 * 9 7 2 11 11 C 1.36305 * 119.89155 * 180.02562 * 10 9 7 12 12 C 1.40037 * 120.10403 * 0.02562 * 11 10 9 13 13 C 1.47591 * 119.89453 * 179.97438 * 12 11 10 14 14 O 1.21613 * 119.99861 * 333.39639 * 13 12 11 15 15 N 1.34779 * 120.00084 * 153.11902 * 13 12 11 16 16 C 1.46931 * 120.55569 * 353.79296 * 15 13 12 17 17 C 1.53433 * 107.76342 * 224.65787 * 16 15 13 18 18 C 1.52838 * 108.86084 * 296.69481 * 17 16 15 19 19 C 1.50611 * 110.51573 * 51.40127 * 18 17 16 20 20 C 1.38455 * 118.86740 * 159.49803 * 19 18 17 21 21 C 1.39096 * 120.16686 * 178.98818 * 20 19 18 22 22 N 1.39879 * 119.96969 * 180.28232 * 21 20 19 23 23 C 1.38927 * 120.02807 * 0.82809 * 21 20 19 24 24 C 1.37956 * 119.82930 * 359.53454 * 23 21 20 25 25 C 1.38728 * 121.53186 * 339.17632 * 19 18 17 26 26 C 1.40039 * 120.20602 * 0.25430 * 12 11 10 27 27 C 1.36291 * 120.10564 * 359.43843 * 26 12 11 28 28 H 0.97001 * 120.00462 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.05755 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.94401 * 180.02562 * 11 10 9 31 31 H 1.08994 * 109.80147 * 344.22787 * 16 15 13 32 32 H 1.08994 * 109.79859 * 105.03878 * 16 15 13 33 33 H 1.08999 * 109.57168 * 56.51210 * 17 16 15 34 34 H 1.09002 * 109.57389 * 176.75589 * 17 16 15 35 35 H 1.09000 * 109.26734 * 171.66835 * 18 17 16 36 36 H 1.08998 * 109.26851 * 291.13653 * 18 17 16 37 37 H 1.08000 * 119.87225 * 359.81940 * 20 19 18 38 38 H 0.96994 * 119.99640 * 180.53833 * 22 21 20 39 39 H 0.97004 * 120.00065 * 0.53874 * 22 21 20 40 40 H 1.08003 * 120.08428 * 179.52592 * 23 21 20 41 41 H 1.07994 * 119.93200 * 179.97438 * 24 23 21 42 42 H 1.08003 * 119.94412 * 179.70169 * 26 12 11 43 43 H 1.08001 * 120.05738 * 180.26964 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3465 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8817 2.3965 1.2126 7 6 2.0077 -1.2143 -0.0005 8 1 3.0533 -1.2343 0.2691 9 6 1.3472 -2.4101 -0.3533 10 6 1.8178 -3.6466 0.1312 11 6 1.1767 -4.7993 -0.2127 12 6 0.0525 -4.7559 -1.0466 13 6 -0.6377 -6.0069 -1.4165 14 8 -0.0244 -7.0569 -1.4359 15 7 -1.9490 -5.9866 -1.7274 16 6 -2.7345 -4.7546 -1.5718 17 6 -4.0636 -5.1284 -0.9024 18 6 -4.8384 -6.0634 -1.8304 19 6 -3.9697 -7.2142 -2.2656 20 6 -4.5742 -8.3673 -2.7365 21 6 -3.7975 -9.4386 -3.1653 22 7 -4.4126 -10.5994 -3.6459 23 6 -2.4117 -9.3604 -3.1058 24 6 -1.8089 -8.2146 -2.6297 25 6 -2.5855 -7.1396 -2.2105 26 6 -0.4153 -3.5298 -1.5352 27 6 0.2154 -2.3714 -1.1917 28 1 -0.4851 0.8400 0.0004 29 1 2.6849 -3.6812 0.7740 30 1 1.5364 -5.7476 0.1585 31 1 -2.1915 -4.0472 -0.9452 32 1 -2.9243 -4.3118 -2.5495 33 1 -3.8668 -5.6331 0.0434 34 1 -4.6471 -4.2259 -0.7201 35 1 -5.7110 -6.4505 -1.3042 36 1 -5.1661 -5.5078 -2.7090 37 1 -5.6514 -8.4293 -2.7834 38 1 -3.8715 -11.3497 -3.9376 39 1 -5.3802 -10.6541 -3.6873 40 1 -1.8080 -10.1947 -3.4313 41 1 -0.7318 -8.1521 -2.5823 42 1 -1.2798 -3.5016 -2.1819 43 1 -0.1486 -1.4259 -1.5655 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580054931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:27 Heat of formation + Delta-G solvation = 12.132442 kcal Electronic energy + Delta-G solvation = -26355.069633 eV Core-core repulsion = 22750.102972 eV Total energy + Delta-G solvation = -3604.966661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04229 -40.00874 -38.85307 -37.83886 -35.75827 -34.67231 -34.38477 -32.10817 -31.43979 -31.06904 -29.24198 -27.74990 -26.50701 -24.18053 -24.12787 -23.35629 -22.55925 -21.31924 -20.26773 -19.34313 -18.33507 -18.07403 -17.47893 -17.31693 -17.05470 -16.49309 -16.09600 -15.63505 -15.39541 -15.18132 -15.09907 -14.62974 -14.46633 -14.26161 -14.12008 -13.97816 -13.79691 -13.69771 -13.63055 -13.15578 -12.84429 -12.74313 -12.65799 -12.48921 -12.36350 -11.95566 -11.79596 -11.66039 -11.53748 -11.24191 -11.04637 -10.39729 -9.99531 -9.59460 -9.51671 -9.43259 -8.77605 -7.93968 -6.47453 0.29950 0.50911 0.77839 1.12840 1.40105 1.43714 1.55960 1.97870 2.08971 2.18404 2.71126 2.99515 3.10097 3.63662 3.69743 3.87982 3.94185 4.08375 4.17301 4.29115 4.36050 4.40559 4.43050 4.51953 4.65249 4.75252 4.86420 4.94107 5.01343 5.02152 5.04491 5.14275 5.21618 5.24825 5.28819 5.33055 5.41443 5.55169 5.59548 5.73112 5.80680 5.96659 5.99319 6.16762 6.22099 6.52159 6.54251 6.68542 6.77636 6.88206 7.11591 7.29537 8.17398 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.026649 B = 0.002955 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.462190 B = 9473.612267 C =10283.110977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.472 4.472 8 H 0.084 0.916 9 C 0.103 3.897 10 C -0.251 4.251 11 C -0.032 4.032 12 C -0.291 4.291 13 C 0.565 3.435 14 O -0.580 6.580 15 N -0.549 5.549 16 C 0.084 3.916 17 C -0.131 4.131 18 C -0.072 4.072 19 C -0.073 4.073 20 C -0.179 4.179 21 C 0.194 3.806 22 N -0.868 5.868 23 C -0.191 4.191 24 C -0.130 4.130 25 C 0.075 3.925 26 C -0.063 4.063 27 C -0.193 4.193 28 H 0.298 0.702 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.152 0.848 38 H 0.404 0.596 39 H 0.407 0.593 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 -7.892 -5.552 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.188 1.188 7 C -0.499 4.499 8 H 0.102 0.898 9 C 0.099 3.901 10 C -0.271 4.271 11 C -0.051 4.051 12 C -0.295 4.295 13 C 0.362 3.638 14 O -0.464 6.464 15 N -0.271 5.271 16 C -0.037 4.037 17 C -0.169 4.169 18 C -0.109 4.109 19 C -0.077 4.077 20 C -0.202 4.202 21 C 0.089 3.911 22 N -0.410 5.410 23 C -0.214 4.214 24 C -0.150 4.150 25 C -0.020 4.020 26 C -0.082 4.082 27 C -0.212 4.212 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.169 0.831 38 H 0.233 0.767 39 H 0.237 0.763 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.566 -8.182 -5.502 16.771 hybrid contribution 0.785 0.195 0.110 0.816 sum -12.781 -7.986 -5.393 16.007 Atomic orbital electron populations 1.69740 1.09051 1.31572 1.31460 1.26876 0.95610 1.04634 0.90924 0.85088 0.79380 0.75666 0.79274 1.18304 1.18466 1.18751 1.20113 0.98307 0.92075 1.39376 0.89832 1.18137 0.91349 0.92802 0.87773 1.20841 1.05003 0.92812 1.08423 1.20427 0.93063 0.96981 0.94639 1.19006 1.03923 0.91857 1.14736 1.18707 0.80973 0.88800 0.75359 1.90439 1.67085 1.33441 1.55469 1.45498 1.08546 1.11178 1.61899 1.22725 0.93005 0.85706 1.02248 1.21908 0.95121 1.01446 0.98394 1.20487 0.97108 0.93209 1.00120 1.19614 0.90468 0.97336 1.00246 1.20615 1.00130 0.92309 1.07180 1.17873 0.91299 0.88369 0.93567 1.42331 1.09793 1.15064 1.73792 1.20621 0.93465 0.99104 1.08246 1.21857 1.01960 0.93166 0.98048 1.17892 0.92222 0.88287 1.03577 1.21136 0.97982 0.91260 0.97787 1.21007 1.00260 0.97249 1.02719 0.89115 0.87742 0.88195 0.88231 0.89652 0.92683 0.87094 0.88036 0.88653 0.83061 0.76703 0.76297 0.85242 0.84690 0.85063 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.98 10.95 21.87 0.24 -36.74 16 2 C 0.04 1.77 5.15 85.35 0.44 2.21 16 3 Si 0.99 34.42 29.59 68.60 2.03 36.45 16 4 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 5 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 6 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 7 C -0.47 -23.65 9.04 23.45 0.21 -23.43 16 8 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 9 C 0.10 5.31 5.57 -21.28 -0.12 5.19 16 10 C -0.25 -12.52 9.73 22.47 0.22 -12.31 16 11 C -0.03 -1.55 9.52 22.26 0.21 -1.34 16 12 C -0.29 -13.67 5.49 -19.94 -0.11 -13.78 16 13 C 0.56 25.64 7.34 86.71 0.64 26.28 16 14 O -0.58 -28.81 13.30 -4.07 -0.05 -28.86 16 15 N -0.55 -20.83 2.97 -632.46 -1.88 -22.71 16 16 C 0.08 2.59 4.51 86.44 0.39 2.98 16 17 C -0.13 -3.09 6.11 30.69 0.19 -2.91 16 18 C -0.07 -1.46 5.77 29.77 0.17 -1.29 16 19 C -0.07 -1.99 5.76 -19.72 -0.11 -2.11 16 20 C -0.18 -4.04 9.53 22.53 0.21 -3.83 16 21 C 0.19 4.53 6.76 38.23 0.26 4.79 16 22 N -0.87 -12.68 9.10 -51.12 -0.47 -13.15 16 23 C -0.19 -5.55 9.90 22.37 0.22 -5.33 16 24 C -0.13 -4.78 8.86 22.41 0.20 -4.58 16 25 C 0.07 2.64 6.32 38.11 0.24 2.89 16 26 C -0.06 -2.81 7.38 22.25 0.16 -2.65 16 27 C -0.19 -9.47 8.63 22.47 0.19 -9.28 16 28 H 0.30 12.20 8.29 -92.71 -0.77 11.43 16 29 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 30 H 0.10 4.72 7.86 -2.91 -0.02 4.69 16 31 H 0.10 3.48 4.73 -2.39 -0.01 3.47 16 32 H 0.09 2.32 7.61 -2.39 -0.02 2.31 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.10 1.56 8.12 -2.39 -0.02 1.54 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.40 4.71 8.84 -92.71 -0.82 3.89 16 39 H 0.41 3.94 8.84 -92.71 -0.82 3.12 16 40 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 41 H 0.14 5.84 4.98 -20.40 -0.10 5.73 16 42 H 0.13 5.01 4.97 -2.91 -0.01 5.00 16 43 H 0.12 5.73 6.18 -2.91 -0.02 5.72 16 Total: -1.00 -64.38 345.50 2.84 -61.53 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: -0.64 Total: 41.97 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 3.62 Total: -38.50 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -2.10 Total: -72.59 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.05 Total: -28.86 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Total: -64.38 2.84 -61.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580054931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.664 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds